CSPI02G04170 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G04170
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 3008666 .. 3010533 (+)
RNA-Seq Expression	CSPI02G04170
Synteny	CSPI02G04170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGTCCGTGAATGAACTAGTCTAGAACTTGGAGGGACGCTGTTGCCGGCCCTTTTAAAATGAGCAGCAGCGGCAAAGGCAAAGCTGACCCAAAAAGCTTGGGGGTTTCGTAGCTTCGTAGCGTTGCGTTCATGGCGAGCTTCGTTTCTCTGAGCTTCTCCGTTCCACAGCTCACTCTCAAGGTAAATTATGCTTCTCAACGCCTTTCCTCTTATCGCATTTGTAATTGCTGCGGAACCTGCTAGAATATCTACTCGATTATTGCATAATGTTCAACGTAATCGCCATTTGAGATTATCTTGTTTAGGTTTACTATATTTCACCTCCCTGAATTTTCTTCTACCTTTTGGAAGACGATTGCGTTCTTTTTTTTTTTTCTTTTTTTTTTTTGGTATATATGCTTTCCGGTGAAACGTTTGGGCTTAAGGAACTATTCTGAAACTTGTTATTTGGTTGGACAATTTTCTACGGATGCTTGGGAAATGTTCGTTGATTATTTTAGCCGAAATGGATTAAGACGCTGAATACTGAATAGTTCGTTATTCTGAAGAGAATATCGTCAGAAAATTAAGTTTATGAGATTATATAAGGATAATTGAGGATGTTATTCTAATTTTGTTGTAAGGATGGATTAGCGAGCAAATTTGTTATGGTTCATACGTAGTGCCATTCATAACTGTAAATTTCTATGCAGCATCATCAAAAAGGTTAGTTCAGATGCTAAAATCATTGCCTGAAGCTCAATCGTTAATCCTGGTTAAAGATATATGAGTTGTTTATTTCTCTAGATTTTAAGGTTTTGATTGCACACTGACTTGTTTTCGATGCGTCAGGAAATCCCACCACGAAAACTGGCTAAAGCTACGTTAGTTTCAAGGCGAGCTGGAACAGGTTTAATTCTCATTCTCTGTATGGTCAATTATTACTGGGATCACCCGCATTTCAACTTAAAATTTTTCTAGTTACATCTTGAGTATGAACGTCTATTAGTCCATGCGTCTACTTGTTACAAAAGACAAACATCCTTATTCCAAAGCATACACATTGAGACGAAAATAATCTATATTTCTTTACAATATACAGGCTCCACTAATTACATTGATTGAAAATTAGAAAACTACTGCAAAATTGATAAAAACTAGAAAAGTTAATGATTGAATGAATGAAGCATTGTACCTATACCCATGTAATGTAATCCTGTACCCACCATATACTTTCTTGATTAGATTGAGTAAATTTTAGATTGCTGATGATATAAATTGCATTGCAGCTTCGAAGCTTGTGCTACCCTGGTATTCAAAGAAATCCATATCGATTAATTGGGAAAACTTTCAATCTGTACGGTTAACTTCAAGACCTTTTTGGGGCATAGTTTCTTCTAGTTCCAGGAATATGGTACTATTAACTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTATCGATCGGATTACTTAACAATTCAGACTTTAAATTCCGTTTCATGATTTGTTTCTGCTTACTATGCCTGATCTTAGTTGAATCATTGTATGCATTAGTCAATAGTCACTTGTTTTCATCAAAGTGTCTGAAACTACCTCCTGCTTGTGAAATTTTTATCTTGTTTGACCTGCGAAGATAGATAAGTAACTTGATGCTGAGAGGTTACTTGAACTTCTAGATTTAGGATTTGATCCACTTTTTCATGACATTGTCAGGATGGTACAAGCTATTTAATGTGAGGCTAGCAAGGACGGTTGAGCATCTCATATTAGGAAACTTAAATAACCTCACACTCTTTATAAAATAGTTGTACTACTTTAATTTTAGTTAATTAGTTTTGAGATGGATCTTATGCTATCTAAGGG

mRNA sequence

GTCGTCCGTGAATGAACTAGTCTAGAACTTGGAGGGACGCTGTTGCCGGCCCTTTTAAAATGAGCAGCAGCGGCAAAGGCAAAGCTGACCCAAAAAGCTTGGGGGTTTCGTAGCTTCGTAGCGTTGCGTTCATGGCGAGCTTCGTTTCTCTGAGCTTCTCCGTTCCACAGCTCACTCTCAAGGAAATCCCACCACGAAAACTGGCTAAAGCTACGTTAGTTTCAAGGCGAGCTGGAACAGCTTCGAAGCTTGTGCTACCCTGGTATTCAAAGAAATCCATATCGATTAATTGGGAAAACTTTCAATCTGTACGGTTAACTTCAAGACCTTTTTGGGGCATAGTTTCTTCTAGTTCCAGGAATATGGTACTATTAACTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTATCGATCGGATTACTTAACAATTCAGACTTTAAATTCCGTTTCATGATTTGTTTCTGCTTACTATGCCTGATCTTAGTTGAATCATTGTATGCATTAGTCAATAGTCACTTGTTTTCATCAAAGTGTCTGAAACTACCTCCTGCTTGTGAAATTTTTATCTTGTTTGACCTGCGAAGATAGATAAGTAACTTGATGCTGAGAGGTTACTTGAACTTCTAGATTTAGGATTTGATCCACTTTTTCATGACATTGTCAGGATGGTACAAGCTATTTAATGTGAGGCTAGCAAGGACGGTTGAGCATCTCATATTAGGAAACTTAAATAACCTCACACTCTTTATAAAATAGTTGTACTACTTTAATTTTAGTTAATTAGTTTTGAGATGGATCTTATGCTATCTAAGGG

Coding sequence (CDS)

ATGGCGAGCTTCGTTTCTCTGAGCTTCTCCGTTCCACAGCTCACTCTCAAGGAAATCCCACCACGAAAACTGGCTAAAGCTACGTTAGTTTCAAGGCGAGCTGGAACAGCTTCGAAGCTTGTGCTACCCTGGTATTCAAAGAAATCCATATCGATTAATTGGGAAAACTTTCAATCTGTACGGTTAACTTCAAGACCTTTTTGGGGCATAGTTTCTTCTAGTTCCAGGAATATGGTACTATTAACTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTATCGATCGGATTACTTAA

Protein sequence

MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSVRLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT*

Homology

[Close]

BLAST of CSPI02G04170 vs. ExPASy TrEMBL
Match: A0A0A0LJQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030030 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60
           MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 106
           RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of CSPI02G04170 vs. ExPASy TrEMBL
Match: A0A5A7U1B8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00850 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.8e-49
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60
           MASFVSLSFSVPQLTLKEIPP KLAKAT+VSRRAGTASKLVLP YSKKSIS+NWENF+SV
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTASKLVLPCYSKKSISMNWENFRSV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 106
           RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of CSPI02G04170 vs. ExPASy TrEMBL
Match: A0A5D3CPK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00650 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.4e-48
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60
           MASFVSLSFSVPQLTLKEIPP KLAKAT+VSRRAGTA KLVLP YSKKSIS+NWENF+SV
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTALKLVLPCYSKKSISMNWENFRSV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 106
           RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of CSPI02G04170 vs. ExPASy TrEMBL
Match: A0A6J1K9Q0 (uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.8e-38
Identity = 84/105 (80.00%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60
           MASFVSLSFSVPQ+  KE+PP KLAK T+V RRAGTASK VL   S KSIS+NWEN Q V
Sbjct: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKPVLSCCSNKSISMNWENCQPV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 106
           RLTSRPFWGIVSSSSRN+V L GYWVGPDVDDGWGYIEA +DRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEALVDRIT 104

[Close]

BLAST of CSPI02G04170 vs. ExPASy TrEMBL
Match: A0A6J1G3X3 (uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC111450562 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36
Identity = 83/105 (79.05%), Postives = 89/105 (84.76%), Query Frame = 0


Query: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60
           MASFVSLSFSVPQ+  KE+PP KLAK T+V RRAGTASK VL   + KSIS NWEN   V
Sbjct: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 106
           RLTSRPFWGIVSSSSRN+V L GYWVGPDVDDGWGYIEAF+DRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAFVDRIT 103

[Close]

BLAST of CSPI02G04170 vs. NCBI nr
Match: KGN60942.1 (hypothetical protein Csa_021351 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 2.5e-52
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60
           MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 106
           RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of CSPI02G04170 vs. NCBI nr
Match: KAA0048017.1 (hypothetical protein E6C27_scaffold385G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 203.4 bits (516), Expect = 9.9e-49
Identity = 100/105 (95.24%), Postives = 103/105 (98.10%), Query Frame = 0


Query: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60
           MASFVSLSFSVPQLTLKEIPP KLAKAT+VSRRAGTASKLVLP YSKKSIS+NWENF+SV
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTASKLVLPCYSKKSISMNWENFRSV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 106
           RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of CSPI02G04170 vs. NCBI nr
Match: TYK13803.1 (hypothetical protein E5676_scaffold488G00650 [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 4.9e-48
Identity = 99/105 (94.29%), Postives = 102/105 (97.14%), Query Frame = 0


Query: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60
           MASFVSLSFSVPQLTLKEIPP KLAKAT+VSRRAGTA KLVLP YSKKSIS+NWENF+SV
Sbjct: 1   MASFVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTALKLVLPCYSKKSISMNWENFRSV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 106
           RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of CSPI02G04170 vs. NCBI nr
Match: XP_038890542.1 (uncharacterized protein LOC120080060 [Benincasa hispida])

HSP 1 Score: 171.0 bits (432), Expect = 5.5e-39
Identity = 85/105 (80.95%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60
           MA+FVSLSFSVPQ TLKEIPPRKL++ T+VS RAGTASKLVL   S  SIS+NW+N   V
Sbjct: 1   MATFVSLSFSVPQPTLKEIPPRKLSEVTVVSSRAGTASKLVLSCCSNISISMNWKNCHPV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 106
           RLT RPFWGIVSSSSR MVLL+GYWVGPDVDDGWGYIEAFIDRIT
Sbjct: 61  RLTPRPFWGIVSSSSRAMVLLSGYWVGPDVDDGWGYIEAFIDRIT 105

[Close]

BLAST of CSPI02G04170 vs. NCBI nr
Match: XP_022999037.1 (uncharacterized protein LOC111493548 [Cucurbita maxima])

HSP 1 Score: 167.2 bits (422), Expect = 7.9e-38
Identity = 84/105 (80.00%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60
           MASFVSLSFSVPQ+  KE+PP KLAK T+V RRAGTASK VL   S KSIS+NWEN Q V
Sbjct: 1   MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKPVLSCCSNKSISMNWENCQPV 60

Query: 61  RLTSRPFWGIVSSSSRNMVLLTGYWVGPDVDDGWGYIEAFIDRIT 106
           RLTSRPFWGIVSSSSRN+V L GYWVGPDVDDGWGYIEA +DRIT
Sbjct: 61  RLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEALVDRIT 104

The following BLAST results are available for this feature:

BLAST of CSPI02G04170 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G04170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJQ7	1.2e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030030 PE=4 SV=1	[more]
A0A5A7U1B8	4.8e-49	95.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CPK7	2.4e-48	94.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1K9Q0	3.8e-38	80.00	uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548...	[more]
A0A6J1G3X3	1.2e-36	79.05	uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC1114505...	[more]

BLAST of CSPI02G04170 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60942.1	2.5e-52	100.00	hypothetical protein Csa_021351 [Cucumis sativus]	[more]
KAA0048017.1	9.9e-49	95.24	hypothetical protein E6C27_scaffold385G00850 [Cucumis melo var. makuwa]	[more]
TYK13803.1	4.9e-48	94.29	hypothetical protein E5676_scaffold488G00650 [Cucumis melo var. makuwa]	[more]
XP_038890542.1	5.5e-39	80.95	uncharacterized protein LOC120080060 [Benincasa hispida]	[more]
XP_022999037.1	7.9e-38	80.00	uncharacterized protein LOC111493548 [Cucurbita maxima]	[more]

BLAST of CSPI02G04170 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G04170.1	CSPI02G04170.1	mRNA