CSPI02G03410 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G03410
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L18
Location	Chr2: 2377823 .. 2380309 (+)
RNA-Seq Expression	CSPI02G03410
Synteny	CSPI02G03410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATGTCGCAGCCGCACATCACCACCAACGCACAGTCAGCTTTCTTTCTTCTACCTCACTTCCTCCGGCTGTTCCACAAAAAAAGTTTCCTTCCAATTGTTTTCGGTTCTTAGTCATATTTTGTTTGATCCATTTCAAACGCAATAAGTGGTTTCAAATCCATTCTGATTTGAAATCCTTACAAGTCCCTTGGTCCCAAACAAAGGGTTTTGTCGCAGAAATTTGTTTTGCCTTTTGAATTTCCTTCATTTGTGTTCTGTTGGGTAATTCTCTTTCAGCTTTTCATATTATTTCTTTGTTTTCTTGATGGGTTTTGATTTTAAGCTGCCAATAATGCACATAACTTAGTTCGAATTCATGGCTTCTTCCATTTTTTTACTTGTTTTTAATATTTTAAATGCTCGCTAGTATGAACTTGGTATTGCCGGACAACTGTTCGACACTATGCCTCATAAAGGTTGAACCTGTGTGTGTTCTTCTATCATAAAGTTAAGCCTTATCTAGTGTACTCATGCTTATTTAGTAGTTTAGTCCGTTTATTAAACCTTCGAGTCCTGAAATATTTCCATGTAGCTGGGAGGTATAATATTTCGCCTCTTTTTTTCTTTTAGGTGCTCATAGGAGCTGAAATCAGGTTCTTTCAGCACAAAAGAGCAAAGGGGGGTTGAGTTGGCTAGTAGAAGAAGGAAAGATGTTGAAGCACTTTCTTGGAAATATGCGGAAACATGTGGTTTGTGCATGTGAAGTGAACAGGTTCAGGCCTTATTTGCTTGTGCCAACAAGTGACTTTCATAAAGGGGAGGTATAATTTCATCTCGTAGCTATATATTCTTGTTTTATAAATATTTCAGTTTTTTAGTAAGCGAAACCTCCAAAATAAAAGACCACACACTATACATCTTTACATCACAAGATTTCACTCTTTGCATAATTTTACATAATAAGGTAACATTCCATACCAGAAAACAACGTTGACTTGCACCAAAAAGGCAATGTACCTAACAACAATATTATGGATCAAATAGTTTTGAAAAAGCTTTGGTTAGACCACACCAAGAAGCCGTATGAAGCTTGATTAGTTCGAATCATTTGGTGCCCCTTAAGAACCGTTTGGTTTCCAATATTTTGTTTGGTTTAGGAGCTTCGTTTCTTTTTTCATTTGGTTGTTGTTGTTTGTTGGCTATTAGGGAAATGACTTAGGTCACCTCACTTGTGTATTTGATTGAAGATTTTAGTTTTAGGCTTGGGAGAAGAGATGTTCAGGTTTTAAAAGTGTAAACTTAATGTTAAATTAATATTGAGCGATTAAAAACTTGTTTTGAAGTAATTTTGAATATCATAAAAGTGATTTTAACAATTTCTAAATTACTCTCATTCGTGTATTTAGTCATTTTCACATACGTATTATAGTTAGTTTGGTGGGTGGTTGGACTTTATCTCCTATAAATTGAAGGTCTTTCCAAAGATGCAAGGCAATTTTCATAAAACTAGTTAAGATTTTTACACCTCCTAAACTGAATAGCGTCTCTTCTATGATGCTTAAGAGGTGTTGATTTCAAACTTGGTAATTCGAGTTATAAAAATTCTACAAGTTTTCGATGTGAATTGTTTTAGGGCTAGACAGTAATTCTTATATAAGTTTGCCTAGACATCAACACTGATATAGAAGATCATATGTTCATATTTAATCACTAGGTATATCCCTATTTCCTCTTATTGGCTATCTTCTTGACTTCTAAAAGACTAACCTCGCTTGATGTTATACAAGAAGGTTTGGTGAATAATCATCATCGTGTTTTGATATTCATGCTGTTTAAATTATTTTCCATTTTTTGCATTAGAACAATCATTTGCTCAGATTGAGTCCAACTTTTTCAAACCTTTGGCTTTGATTATCCAATGCATGATTGATTGCTTTATCACAGGTTCATTGTGCACCCAGAAGTTTCTTTGGTATAGAGGACTTCTTAGATGATGATAATAGTCGGCCATACACATACCAGAAGTCGAAAAAATCCAAGAATCCAAAAAAGCACATCTCATTTAAGCAACGGACCTTAGCTTACATGGAACCATTTACACTTGACGTGTTCATCTCAAAGCGGTTTGTTTCAGCATCACTTACACACAGGGTGACTTGTAAACAAGTTGCTGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATTTTAGCTGAGAGGGCTAGAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAATCTCTTATTGATAATGGGATTGATGTTAAAATTTATCTTGAATAAAAAACATCTTATATAGTTTATGAAGTAACACTTCATGATCATTGATTAATTGTCTTCTGAATCTTCTATTGAGGCGTTTTAATATCAAGGTTTAGATACCGTCTGC

mRNA sequence

ATGCTATGTCGCAGCCGCACATCACCACCAACGCACAGTCAGCTTTCTTTCTTCTACCTCACTTCCTCCGGCTGTTCCACAAAAAAAGTTTCCTTCCAATTGTTTTCGGTTCTTAGTCATATTTTGTTTGATCCATTTCAAACGCAATAAGTGGTTTCAAATCCATTCTGATTTGAAATCCTTACAAGTCCCTTGGTCCCAAACAAAGGGTTTTGTCGCAGAAATTTGTTTTGCCTTTTGAATTTCCTTCATTTGTGTTCTGTTGGGTGCTCATAGGAGCTGAAATCAGGTTCTTTCAGCACAAAAGAGCAAAGGGGGGTTGAGTTGGCTAGTAGAAGAAGGAAAGATGTTGAAGCACTTTCTTGGAAATATGCGGAAACATGTGGTTTGTGCATGTGAAGTGAACAGGTTCAGGCCTTATTTGCTTGTGCCAACAAGTGACTTTCATAAAGGGGAGGTTCATTGTGCACCCAGAAGTTTCTTTGGTATAGAGGACTTCTTAGATGATGATAATAGTCGGCCATACACATACCAGAAGTCGAAAAAATCCAAGAATCCAAAAAAGCACATCTCATTTAAGCAACGGACCTTAGCTTACATGGAACCATTTACACTTGACGTGTTCATCTCAAAGCGGTTTGTTTCAGCATCACTTACACACAGGGTGACTTGTAAACAAGTTGCTGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATTTTAGCTGAGAGGGCTAGAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAATCTCTTATTGATAATGGGATTGATGTTAAAATTTATCTTGAATAAAAAACATCTTATATAGTTTATGAAGTAACACTTCATGATCATTGATTAATTGTCTTCTGAATCTTCTATTGAGGCGTTTTAATATCAAGGTTTAGATACCGTCTGC

Coding sequence (CDS)

ATGTTGAAGCACTTTCTTGGAAATATGCGGAAACATGTGGTTTGTGCATGTGAAGTGAACAGGTTCAGGCCTTATTTGCTTGTGCCAACAAGTGACTTTCATAAAGGGGAGGTTCATTGTGCACCCAGAAGTTTCTTTGGTATAGAGGACTTCTTAGATGATGATAATAGTCGGCCATACACATACCAGAAGTCGAAAAAATCCAAGAATCCAAAAAAGCACATCTCATTTAAGCAACGGACCTTAGCTTACATGGAACCATTTACACTTGACGTGTTCATCTCAAAGCGGTTTGTTTCAGCATCACTTACACACAGGGTGACTTGTAAACAAGTTGCTGTTGCAGGTACTAACTCAAAAGATATCAAAGCTGTTCTTCAGTCTCGTTCAGATATACCTGCTTGTTTGGCCGTTGGCCGTATTTTAGCTGAGAGGGCTAGAGAAGCTGATGTTTATACTGCTAGTTATACTCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAATCTCTTATTGATAATGGGATTGATGTTAAAATTTATCTTGAATAA

Protein sequence

MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPYTYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE*

Homology

[Close]

BLAST of CSPI02G03410 vs. ExPASy Swiss-Prot
Match: C4Z2U6 (50S ribosomal protein L18 OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 / VPI C15-48 / C15-B4) OX=515620 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-04
Identity = 34/119 (28.57%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 63  QKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDI 122
           +KS+     +KH   + R     E   L VF S   + A +      K +  A T  K++
Sbjct: 4   KKSRTVVREQKHRRLRNRFSGTAERPRLAVFRSNNHMYAQIIDDTVGKTLVSASTLDKEV 63

Query: 123 KAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
           KA L+  +++ A  AVG ++A+RA E  + T  Y  R    + GKI+A+ ++  + G++
Sbjct: 64  KAELEKTNNVEAAAAVGTVVAKRALEKGIKTVVY-DRGGFIYAGKIKALAEAAREAGLE 121

[Close]

BLAST of CSPI02G03410 vs. ExPASy Swiss-Prot
Match: C3MAZ6 (50S ribosomal protein L18 OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.8e-04
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 90  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREA 149
           L V  S + + A +   V  K +A A T   D+K+ L++ +D  A  AVG++LAERA +A
Sbjct: 29  LSVHRSSKNIYAQIIDDVAGKTIAAASTLEADLKSALKTGADTAAATAVGKLLAERASKA 88

Query: 150 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V    +  R    + G+++A+ ++  + G++
Sbjct: 89  GVKDVVF-DRGAFIYHGRVKALAEAAREGGLN 119

[Close]

BLAST of CSPI02G03410 vs. ExPASy Swiss-Prot
Match: B1Z777 (50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rplR PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.7e-04
Identity = 29/92 (31.52%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 90  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREA 149
           L VF S + +   +      + +A A +  KD+KA L++ +D  A  AVG+++AERA+ A
Sbjct: 29  LSVFRSSKQIYVQVIDDAVGRTLAAASSLDKDLKASLKTGADKAAAEAVGKLVAERAKAA 88

Query: 150 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V T     R    F G+++A+  +  + G+D
Sbjct: 89  GV-TKVVFDRSGYIFHGRVKALADAAREGGLD 119

[Close]

BLAST of CSPI02G03410 vs. ExPASy Swiss-Prot
Match: B1LWR0 (50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1) OX=426355 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.2e-04
Identity = 28/92 (30.43%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 90  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREA 149
           L VF S + +   +   V  K +A A +  K +K  L++ +D+ A  AVG+++AERA+ A
Sbjct: 29  LSVFRSSKQIYVQVIDDVAGKTLASASSIDKALKGELKTGADVAAATAVGKLVAERAKAA 88

Query: 150 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V T     R    + G+++AV ++  + G++
Sbjct: 89  GV-TKVIFDRSGYIYHGRVKAVAEAAREGGLE 119

[Close]

BLAST of CSPI02G03410 vs. ExPASy Swiss-Prot
Match: A5FZU9 (50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.0e-04
Identity = 29/110 (26.36%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 72  KKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLQSRSD 131
           ++ + ++ R  A+  P  L VF S + + A +      + +A A +    +++ L++ +D
Sbjct: 12  RQRLRYQIRLKAHGRP-RLSVFRSGKHIYAQVIDDAAGRTLAAASSLDAGLRSALKTGAD 71

Query: 132 IPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
             A  AVG+++AERA+EA V T     R    + G+++A+ ++  ++G+D
Sbjct: 72  KAAAAAVGKLVAERAKEAGV-TQVVFDRGAYMYHGRVKALAEAARESGLD 119

[Close]

BLAST of CSPI02G03410 vs. ExPASy TrEMBL
Match: A0A0A0LLI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.5e-101
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of CSPI02G03410 vs. ExPASy TrEMBL
Match: A0A1S3C286 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.8e-100
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKHFLGNM KHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFG+EDFLDDDNSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK+KKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of CSPI02G03410 vs. ExPASy TrEMBL
Match: A0A6J1G387 (uncharacterized protein LOC111450420 OS=Cucurbita moschata OX=3662 GN=LOC111450420 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.7e-95
Identity = 175/187 (93.58%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKH LGNMRKH VCACEVNR RPYL VPTSDFHKGE H APRSFFG+EDF+DDDNSRPY
Sbjct: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of CSPI02G03410 vs. ExPASy TrEMBL
Match: A0A6J1DBH5 (uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018783 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 6.0e-95
Identity = 176/187 (94.12%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKHFLG MRKHVVC CEVNR RPY  VPTSDFHKGEVH APRSFFG+EDFLDDDNSRPY
Sbjct: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of CSPI02G03410 vs. ExPASy TrEMBL
Match: A0A6J1KIR9 (uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 7.9e-95
Identity = 173/187 (92.51%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKH LGNMRKHVVC+CEVNR RPYL VPTSDFHKGE H APRSFFG+EDF+DDDNSRPY
Sbjct: 1   MLKHLLGNMRKHVVCSCEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKH+SFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of CSPI02G03410 vs. NCBI nr
Match: XP_004139203.1 (uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736382.1 uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736383.1 uncharacterized protein LOC101215592 [Cucumis sativus] >KGN60851.1 hypothetical protein Csa_019355 [Cucumis sativus])

HSP 1 Score: 378.6 bits (971), Expect = 3.1e-101
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of CSPI02G03410 vs. NCBI nr
Match: XP_008455473.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo])

HSP 1 Score: 374.4 bits (960), Expect = 5.8e-100
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKHFLGNM KHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFG+EDFLDDDNSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK+KKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of CSPI02G03410 vs. NCBI nr
Match: XP_038890306.1 (50S ribosomal protein L18 [Benincasa hispida])

HSP 1 Score: 365.2 bits (936), Expect = 3.5e-97
Identity = 180/187 (96.26%), Postives = 184/187 (98.40%), Query Frame = 0


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           ML+HFLGNMRKHVVCACEVNR RPYLLVPTSDFHKGEVH APRSFFG+EDFLDDDNSRPY
Sbjct: 1   MLRHFLGNMRKHVVCACEVNRVRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of CSPI02G03410 vs. NCBI nr
Match: XP_022946296.1 (uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_023546735.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo] >XP_023546736.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo] >KAG7030275.1 hypothetical protein SDJN02_08622 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 357.8 bits (917), Expect = 5.6e-95
Identity = 175/187 (93.58%), Postives = 180/187 (96.26%), Query Frame = 0


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKH LGNMRKH VCACEVNR RPYL VPTSDFHKGE H APRSFFG+EDF+DDDNSRPY
Sbjct: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLQSRSDIPACLAVGRIL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of CSPI02G03410 vs. NCBI nr
Match: XP_022150717.1 (uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncharacterized protein LOC111018783 [Momordica charantia])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 176/187 (94.12%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60
           MLKHFLG MRKHVVC CEVNR RPY  VPTSDFHKGEVH APRSFFG+EDFLDDDNSRPY
Sbjct: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of CSPI02G03410 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 278.5 bits (711), Expect = 4.0e-75
Identity = 136/189 (71.96%), Postives = 160/189 (84.66%), Query Frame = 0


Query: 1   MLKHFLG--NMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSR 60
           MLK  +   ++ K  +      + RP++   +  FH G    APRSFFG+ED++DDD SR
Sbjct: 1   MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 60

Query: 61  PYTYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTN 120
           PYTYQK KKSKNP KH+SFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTN
Sbjct: 61  PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 120

Query: 121 SKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDN 180
           SKD+KAVL+SR DIPAC+++GRIL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDN
Sbjct: 121 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 180

Query: 181 GIDVKIYLE 188
           GIDVKIYL+
Sbjct: 181 GIDVKIYLD 189

[Close]

BLAST of CSPI02G03410 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 278.5 bits (711), Expect = 4.0e-75
Identity = 136/189 (71.96%), Postives = 160/189 (84.66%), Query Frame = 0


Query: 1   MLKHFLG--NMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSR 60
           MLK  +   ++ K  +      + RP++   +  FH G    APRSFFG+ED++DDD SR
Sbjct: 46  MLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSR 105

Query: 61  PYTYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTN 120
           PYTYQK KKSKNP KH+SFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTN
Sbjct: 106 PYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTN 165

Query: 121 SKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDN 180
           SKD+KAVL+SR DIPAC+++GRIL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDN
Sbjct: 166 SKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDN 225

Query: 181 GIDVKIYLE 188
           GIDVKIYL+
Sbjct: 226 GIDVKIYLD 234

[Close]

BLAST of CSPI02G03410 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 111.3 bits (277), Expect = 8.5e-25
Identity = 59/134 (44.03%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 54  DDNSRPYTYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVA 113
           +D+    T   ++  K  ++  +F Q T  +  PF LD++ISK  V A + HRVT K V 
Sbjct: 164 NDSFTGETDHPNEAVKKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVT 223

Query: 114 VAGTNSKDIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQ 173
           VA + SKD+K  L SR ++ AC AVG +LA+R+ E D++   YTPR+ DK EGK++ V+Q
Sbjct: 224 VAHSISKDMKFDLGSRRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQ 283

Query: 174 SLIDNGIDVKIYLE 188
           +LIDNG++VK+ L+
Sbjct: 284 ALIDNGVNVKVKLK 297

[Close]

BLAST of CSPI02G03410 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 102.4 bits (254), Expect = 3.9e-22
Identity = 50/117 (42.74%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 64  KSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIK 123
           + + +K P +  S+KQRT  YM PF L+VF S++F+ A + HR T K ++VA TN++DI+
Sbjct: 68  RGEAAKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIR 127

Query: 124 AVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
             + S  D  AC  +G+++AER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Sbjct: 128 TNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

The following BLAST results are available for this feature:

BLAST of CSPI02G03410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C4Z2U6	1.6e-04	28.57	50S ribosomal protein L18 OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 /...	[more]
C3MAZ6	2.8e-04	30.43	50S ribosomal protein L18 OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) ...	[more]
B1Z777	4.7e-04	31.52	50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 1...	[more]
B1LWR0	6.2e-04	30.43	50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain ATCC 27329 /...	[more]
A5FZU9	8.0e-04	26.36	50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl...	[more]

BLAST of CSPI02G03410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLI4	1.5e-101	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1	[more]
A0A1S3C286	2.8e-100	98.40	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1	[more]
A0A6J1G387	2.7e-95	93.58	uncharacterized protein LOC111450420 OS=Cucurbita moschata OX=3662 GN=LOC1114504...	[more]
A0A6J1DBH5	6.0e-95	94.12	uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1KIR9	7.9e-95	92.51	uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611...	[more]

BLAST of CSPI02G03410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139203.1	3.1e-101	100.00	uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736382.1 uncharact...	[more]
XP_008455473.1	5.8e-100	98.40	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 5...	[more]
XP_038890306.1	3.5e-97	96.26	50S ribosomal protein L18 [Benincasa hispida]	[more]
XP_022946296.1	5.6e-95	93.58	uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 unchar...	[more]
XP_022150717.1	1.2e-94	94.12	uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncha...	[more]

BLAST of CSPI02G03410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08845.1	4.0e-75	71.96	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	4.0e-75	71.96	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	8.5e-25	44.03	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	3.9e-22	42.74	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 64..181 e-value: 1.1E-16 score: 63.3
None	No IPR available	PANTHER	PTHR12899:SF5	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 1..187
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 78..180 e-value: 1.7248E-22 score: 84.8991
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 66..180
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 65..181 e-value: 1.1E-8 score: 35.5
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G03410.1	CSPI02G03410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0019829	ATPase-coupled cation transmembrane transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003735	structural constituent of ribosome