CSPI02G02880 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G02880
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	PSII 6.1 kDa protein
Location	Chr2: 1985105 .. 1986620 (+)
RNA-Seq Expression	CSPI02G02880
Synteny	CSPI02G02880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGTCATAATACTCAAGTAATTACATACTAAGTATGAAAACTCTTTTTTTTTCTTATATAGTTTTTTTAATCTTCTCATTTCTTGATTTTTCTCCCACCAAGCCATCAACAGCACCATTGGTCATAGACTATGACTAAATATTTCACTGATGCAAATGGATGGGAGGTACACGTGGAGAGCAAAGATTGGATGAATAAGGATTGAGTATACAAAACTGTTTGGCTGTTCTCATATCCAAACTGTGTGGTGCATAAAGATGAAAACTTTTCATTACCCTCAACTTAAAAACACAAAACAACACGAGATCCAAGTTATACAGCCAAACAAAAGCCTTTCCCTTCATCCTCAAGCAGGTGTTTTTAGCTGCAAACATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGATCATCCAAGCTTCTTACATCCCCAACAATGGCAGCTCACAGTAAGTTTCTTCGTTTCCAAACAGCTTTTTCACTACTTTTTGTTACCCAAGTACAGACAAAGCTTCAACTTTCTTACTCTTCCTTTCAACCACTGAACTGGGTTTTGACCCAATTTTTGAAATCGCTGAAATTCCAAGAGAAACTTTGGTTGTACGAAAATAGCAATCGAAAGTGTAAAACCAAACATTTTGTTGATTTTGAATGATGGAAAGCAGGGTGATTTTCAATATGACAAGTGATTTTAGCAATCTCAAAATCACTCCCAAACAAATCTCTAGTTTCTCATTAATTGACATGTTTTATGTTAAATATAGACGATAAGTTTAGATTTGACAAAGAATATATGTGAAACACGAAAGGTTAAATTGGGTCGACTTTTGTTCGAACCTGCCTTTCCCCTTTTGCTATCCGTCTCGATCGACCCACAAAACCGAGGTTTAAGTCACGAAGGCTGTTTAAGTTTGAATCTGTAAAAATTCTAGAGAACATCATATTCATTATCGAATAAGGAGGAAATAGGCAAGAGTGAGTATGGTAGTGTACATTTTTATCCAAACATACATTTTAACTGATAGAGCGTACTTTTTCCAGGGTTGCCCACGTTGCAAAAGATGAAGAAGGGAGGGATAAAATGTAGTGTGGAAGAGAAGCCAGAAGGGAAGAAGCTGTCAGAAGAAAGCATGGTTCCGGGGACAGTGGGCGCAGTGGCGATGGCTGCATTGGCAGCGGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGTGGTGTTTGCTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTTTGAATCAATCATCCAAATTTCTTAATAAGAAGAATTTATATTTAAATACTTGAGTCTATCTAAGTTGTATTCATCTTTTCACCCTTCACCTAATTGTTATTAAATCTCTTTCTTCAGTGATATTTGTTATCTGTTTTCTTTATTTTAAT

mRNA sequence

CGGGTCATAATACTCAAGTAATTACATACTAAGTATGAAAACTCTTTTTTTTTCTTATATAGTTTTTTTAATCTTCTCATTTCTTGATTTTTCTCCCACCAAGCCATCAACAGCACCATTGGTCATAGACTATGACTAAATATTTCACTGATGCAAATGGATGGGAGGTACACGTGGAGAGCAAAGATTGGATGAATAAGGATTGAGTATACAAAACTGTTTGGCTGTTCTCATATCCAAACTGTGTGGTGCATAAAGATGAAAACTTTTCATTACCCTCAACTTAAAAACACAAAACAACACGAGATCCAAGTTATACAGCCAAACAAAAGCCTTTCCCTTCATCCTCAAGCAGGTGTTTTTAGCTGCAAACATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGATCATCCAAGCTTCTTACATCCCCAACAATGGCAGCTCACAGGTTGCCCACGTTGCAAAAGATGAAGAAGGGAGGGATAAAATGTAGTGTGGAAGAGAAGCCAGAAGGGAAGAAGCTGTCAGAAGAAAGCATGGTTCCGGGGACAGTGGGCGCAGTGGCGATGGCTGCATTGGCAGCGGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGTGGTGTTTGCTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTTTGAATCAATCATCCAAATTTCTTAATAAGAAGAATTTATATTTAAATACTTGAGTCTATCTAAGTTGTATTCATCTTTTCACCCTTCACCTAATTGTTATTAAATCTCTTTCTTCAGTGATATTTGTTATCTGTTTTCTTTATTTTAAT

Coding sequence (CDS)

ATGGCTTCTACTCTGCTTCCTCACTCCAGGCTTTTACTCAAAGGATCATCCAAGCTTCTTACATCCCCAACAATGGCAGCTCACAGGTTGCCCACGTTGCAAAAGATGAAGAAGGGAGGGATAAAATGTAGTGTGGAAGAGAAGCCAGAAGGGAAGAAGCTGTCAGAAGAAAGCATGGTTCCGGGGACAGTGGGCGCAGTGGCGATGGCTGCATTGGCAGCGGCAGGACCTGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTGAGCAACAACCTTCTTGGGTGGATTTTGGCTGTGGTGTTTGCTTTAATTTGGGCTCTATATTTTGTCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTTTGA

Protein sequence

MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL*

Homology

[Close]

BLAST of CSPI02G02880 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 3.5e-25
Identity = 71/122 (58.20%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 19  LLTSPTMAAHR----LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAA 78
           LL  PT+A       LP + K KKGG++CS+E K         S++   V A A AAL A
Sbjct: 18  LLLKPTVAISAPVLGLPPMGK-KKGGVRCSMETKQ-----GNVSVMGAGVSAAATAALTA 77

Query: 79  --AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGL 135
             + PA+ALVDER+STEGTGLPFGLSNNLLGWIL  VF LIW  +FVY SSL+EDE+SGL
Sbjct: 78  VMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGL 133

[Close]

BLAST of CSPI02G02880 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-24
Identity = 71/137 (51.82%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60
           +A   L H+  +   SS +L  P+M           K+  + CS+E KP   + +  +  
Sbjct: 13  VARASLVHNSRVGVSSSPILGLPSMT----------KRSKVTCSIENKPSTTETT--TTT 72

Query: 61  PGTVGAVAMAALAAA---GPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALY 120
             ++GA  +AA AAA    PA+ALVDER+STEGTGLPFGLSNNLLGWIL  VF LIWALY
Sbjct: 73  NKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALY 132

Query: 121 FVYASSLDEDEDSGLSL 135
           FVYAS L+EDE+SGLSL
Sbjct: 133 FVYASGLEEDEESGLSL 137

[Close]

BLAST of CSPI02G02880 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-18
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 30  LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTE 89
           LP ++  +   ++C+       K+ +  +      GA  +A  A A PA+ALVDER+STE
Sbjct: 24  LPQMRARRSERVRCNY-----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTE 83

Query: 90  GTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSG 132
           GTGL  GLSNNLLGWIL  VF LIW+LY +Y S L+EDE+SG
Sbjct: 84  GTGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

[Close]

BLAST of CSPI02G02880 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-10
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 42  KCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNL 101
           K +       KK++  S +P T+         AA PA ALVDER++ +GTG PFG+++ +
Sbjct: 30  KATTVRSEVAKKVAMLSTLPATL---------AAHPAFALVDERMNGDGTGRPFGVNDPV 89

Query: 102 LGWILAVVFALIWALYFVYASSLD--EDEDSGLSL 135
           LGW+L  VF  +WA++F+    L   ED D GL L
Sbjct: 90  LGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLKL 115

[Close]

BLAST of CSPI02G02880 vs. ExPASy TrEMBL
Match: A0A0A0LJA2 (PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.7e-64
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60
           MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120
           PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 135
           ASSLDEDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of CSPI02G02880 vs. ExPASy TrEMBL
Match: A0A1S3C2B0 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.3e-54
Identity = 122/134 (91.04%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60
           MASTLLPHSRLLLKGSSKLL S TMAA RLPTLQKMK G IKC VEEKPEGKK SEESMV
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKK-SEESMV 60

Query: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120
           PGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNLLGWILA +F LIWALYFVY
Sbjct: 61  PGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 135
           ASSLDEDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 133

[Close]

BLAST of CSPI02G02880 vs. ExPASy TrEMBL
Match: A0A1S4E257 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.2e-50
Identity = 121/156 (77.56%), Postives = 123/156 (78.85%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHR----------------------LPTLQKMKK 60
           MASTLLPHSRLLLKGSSKLL S TMAA                        LPTLQKMK 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPTFSLLLSVLMDRQISLSNKEEIGLPTLQKMKM 60

Query: 61  GGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLS 120
           G IKC VEEKPEGKK SEESMVPGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLS
Sbjct: 61  GRIKCKVEEKPEGKK-SEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLS 120

Query: 121 NNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL 135
           NNLLGWILA +F LIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 NNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 155

[Close]

BLAST of CSPI02G02880 vs. ExPASy TrEMBL
Match: A0A6J1FBR0 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.3e-46
Identity = 103/134 (76.87%), Postives = 114/134 (85.07%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60
           MASTLL HS + LKGS KLL  P MAAHRLP +QKMKKGGIKC +EEK EGK+ S+ES++
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKR-SKESLI 60

Query: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120
            GTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILA +F  IWALYFVY
Sbjct: 61  SGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 135
           ASSL+EDEDSGLSL
Sbjct: 121 ASSLEEDEDSGLSL 133

[Close]

BLAST of CSPI02G02880 vs. ExPASy TrEMBL
Match: A0A6J1KED2 (PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111493586 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.0e-43
Identity = 104/134 (77.61%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60
           MAS+LL  SR+LLKGSS +L SP MAAHRLP   KMK+  IKC  EEK EGK+ SEE MV
Sbjct: 1   MASSLLSPSRILLKGSSMILPSPLMAAHRLP---KMKRRAIKCKAEEKREGKR-SEERMV 60

Query: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120
            GTV AVAMA +AAAGPAVALVDERLSTEGTGLPFGLSNNLLGWIL  +F LIW+LYFVY
Sbjct: 61  SGTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVY 120

Query: 121 ASSLDEDEDSGLSL 135
           ASSLDED+DSGLSL
Sbjct: 121 ASSLDEDDDSGLSL 130

[Close]

BLAST of CSPI02G02880 vs. NCBI nr
Match: XP_004139238.1 (photosystem II reaction center W protein, chloroplastic [Cucumis sativus] >KGN60797.1 hypothetical protein Csa_019406 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 1.4e-63
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60
           MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120
           PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 135
           ASSLDEDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of CSPI02G02880 vs. NCBI nr
Match: XP_008456049.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 2.6e-54
Identity = 122/134 (91.04%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60
           MASTLLPHSRLLLKGSSKLL S TMAA RLPTLQKMK G IKC VEEKPEGKK SEESMV
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKK-SEESMV 60

Query: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120
           PGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNLLGWILA +F LIWALYFVY
Sbjct: 61  PGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 135
           ASSLDEDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 133

[Close]

BLAST of CSPI02G02880 vs. NCBI nr
Match: XP_038890119.1 (photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 221.9 bits (564), Expect = 3.4e-54
Identity = 121/134 (90.30%), Postives = 125/134 (93.28%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60
           MASTLL HSRLLLKGSSK+L SP +AAHRLP LQKMKKGGIKC VEEKPEGKK SEES+V
Sbjct: 1   MASTLLSHSRLLLKGSSKVLPSPPVAAHRLPMLQKMKKGGIKCRVEEKPEGKK-SEESLV 60

Query: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120
            GT+ AVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILA VFALIWALYFVY
Sbjct: 61  SGTMAAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFALIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 135
           ASSLDEDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 133

[Close]

BLAST of CSPI02G02880 vs. NCBI nr
Match: XP_016902308.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 8.7e-50
Identity = 121/156 (77.56%), Postives = 123/156 (78.85%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHR----------------------LPTLQKMKK 60
           MASTLLPHSRLLLKGSSKLL S TMAA                        LPTLQKMK 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPTFSLLLSVLMDRQISLSNKEEIGLPTLQKMKM 60

Query: 61  GGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLS 120
           G IKC VEEKPEGKK SEESMVPGTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLS
Sbjct: 61  GRIKCKVEEKPEGKK-SEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLS 120

Query: 121 NNLLGWILAVVFALIWALYFVYASSLDEDEDSGLSL 135
           NNLLGWILA +F LIWALYFVYASSLDEDEDSGLSL
Sbjct: 121 NNLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 155

[Close]

BLAST of CSPI02G02880 vs. NCBI nr
Match: XP_022937622.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata] >KAG6586311.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021160.1 Photosystem II reaction center W protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-45
Identity = 103/134 (76.87%), Postives = 114/134 (85.07%), Query Frame = 0


Query: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60
           MASTLL HS + LKGS KLL  P MAAHRLP +QKMKKGGIKC +EEK EGK+ S+ES++
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKR-SKESLI 60

Query: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120
            GTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILA +F  IWALYFVY
Sbjct: 61  SGTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 135
           ASSL+EDEDSGLSL
Sbjct: 121 ASSLEEDEDSGLSL 133

[Close]

BLAST of CSPI02G02880 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-26
Identity = 71/122 (58.20%), Postives = 84/122 (68.85%), Query Frame = 0


Query: 19  LLTSPTMAAHR----LPTLQKMKKGGIKCSVEEKPEGKKLSEESMVPGTVGAVAMAALAA 78
           LL  PT+A       LP + K KKGG++CS+E K         S++   V A A AAL A
Sbjct: 18  LLLKPTVAISAPVLGLPPMGK-KKGGVRCSMETKQ-----GNVSVMGAGVSAAATAALTA 77

Query: 79  --AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVYASSLDEDEDSGL 135
             + PA+ALVDER+STEGTGLPFGLSNNLLGWIL  VF LIW  +FVY SSL+EDE+SGL
Sbjct: 78  VMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVYTSSLEEDEESGL 133

The following BLAST results are available for this feature:

BLAST of CSPI02G02880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39194	3.5e-25	58.20	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q41387	2.3e-24	51.82	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q5ZBY9	3.2e-18	49.02	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	5.4e-10	40.00	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of CSPI02G02880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJA2	6.7e-64	100.00	PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1	[more]
A0A1S3C2B0	1.3e-54	91.04	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A1S4E257	4.2e-50	77.56	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A6J1FBR0	6.3e-46	76.87	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1	[more]
A0A6J1KED2	1.0e-43	77.61	PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111493586 PE=3 SV=1	[more]

BLAST of CSPI02G02880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139238.1	1.4e-63	100.00	photosystem II reaction center W protein, chloroplastic [Cucumis sativus] >KGN60...	[more]
XP_008456049.1	2.6e-54	91.04	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]
XP_038890119.1	3.4e-54	90.30	photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]	[more]
XP_016902308.1	8.7e-50	77.56	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]
XP_022937622.1	1.3e-45	76.87	photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata...	[more]

BLAST of CSPI02G02880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	2.5e-26	58.20	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 27..134 e-value: 1.6E-42 score: 144.7
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 2..134
None	No IPR available	PANTHER	PTHR34552:SF5	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC-LIKE	coord: 2..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G02880.1	CSPI02G02880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast