CSPI02G02570 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G02570
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like
Location	Chr2: 1778270 .. 1779087 (-)
RNA-Seq Expression	CSPI02G02570
Synteny	CSPI02G02570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTATGGTCTCCTCTCATTTAAATTGTTGTTGTTGATCTTCTTGATCATCTCTTTTTTGCCATGCAGATTAAAACCCATTTCTTAGTTTTTCTTCTCTTTTGGAACAAAAAACCCTAAAATAATAAGTGGGTTTCTCTTCAAAACCCTAAAAGATGAAATCTTTCTCACATCGGCCATAACCAAAAGTTTCAATCTTTTACAAACATTTTCCTCCCCATTTTTCATCTTTCCGATTAATTAAACAATGGATTTGTTTTCAGAATCATCATCCAATAATAGTACTCCCACCACCACCACTACCACTACAACACCACCCACCGCCACCACCACCACTGCTGCCTCTGCCACCACACCAAGCCGGTACGAGAATCAAAAAAGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCACCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGTAAGACAAAAGTACACAACCAAACCTGTCCGTTCTTTGGCCTGCCCAACCCCCCTGCCCCCTGTCCGTGCCCGTTGAGACAAGCGTGGGGCAGCTTAGACGCTCTCATCGGCCGGCTTCGGGCAGCTTACGAAGAGAACGGTGGTCGGGCGGAGGGAAATCCTTTCGGAGCAAGAGCGGTTCGGTTGTACTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTACGAGAAGAAGAGAAAAAGGCCTAAGCAAAAAATTAATACTTCTTCAACTACTACTCACGATCATCATCAAGATTCTACTACTTGA

mRNA sequence

CTCTTTATGGTCTCCTCTCATTTAAATTGTTGTTGTTGATCTTCTTGATCATCTCTTTTTTGCCATGCAGATTAAAACCCATTTCTTAGTTTTTCTTCTCTTTTGGAACAAAAAACCCTAAAATAATAAGTGGGTTTCTCTTCAAAACCCTAAAAGATGAAATCTTTCTCACATCGGCCATAACCAAAAGTTTCAATCTTTTACAAACATTTTCCTCCCCATTTTTCATCTTTCCGATTAATTAAACAATGGATTTGTTTTCAGAATCATCATCCAATAATAGTACTCCCACCACCACCACTACCACTACAACACCACCCACCGCCACCACCACCACTGCTGCCTCTGCCACCACACCAAGCCGGTACGAGAATCAAAAAAGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCACCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGTAAGACAAAAGTACACAACCAAACCTGTCCGTTCTTTGGCCTGCCCAACCCCCCTGCCCCCTGTCCGTGCCCGTTGAGACAAGCGTGGGGCAGCTTAGACGCTCTCATCGGCCGGCTTCGGGCAGCTTACGAAGAGAACGGTGGTCGGGCGGAGGGAAATCCTTTCGGAGCAAGAGCGGTTCGGTTGTACTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTACGAGAAGAAGAGAAAAAGGCCTAAGCAAAAAATTAATACTTCTTCAACTACTACTCACGATCATCATCAAGATTCTACTACTTGA

Coding sequence (CDS)

ATGGATTTGTTTTCAGAATCATCATCCAATAATAGTACTCCCACCACCACCACTACCACTACAACACCACCCACCGCCACCACCACCACTGCTGCCTCTGCCACCACACCAAGCCGGTACGAGAATCAAAAAAGGAGAGATTGGAACACGTTTTGTCAATACCTCCGGAACCACCGGCCACCGTTGGCTCTTCAGATGTGCAGCGGCGCTCACGTGCTGGAATTCCTCCGGTACTTAGATCAGTTCGGTAAGACAAAAGTACACAACCAAACCTGTCCGTTCTTTGGCCTGCCCAACCCCCCTGCCCCCTGTCCGTGCCCGTTGAGACAAGCGTGGGGCAGCTTAGACGCTCTCATCGGCCGGCTTCGGGCAGCTTACGAAGAGAACGGTGGTCGGGCGGAGGGAAATCCTTTCGGAGCAAGAGCGGTTCGGTTGTACTTAAGGGAAGTTCGTGATTTTCAAGCGAAAGCAAGAGGTGTTAGTTACGAGAAGAAGAGAAAAAGGCCTAAGCAAAAAATTAATACTTCTTCAACTACTACTCACGATCATCATCAAGATTCTACTACTTGA

Protein sequence

MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTTHDHHQDSTT*

Homology

[Close]

BLAST of CSPI02G02570 vs. ExPASy Swiss-Prot
Match: Q6NNI3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-66
Identity = 129/168 (76.79%), Postives = 138/168 (82.14%), Query Frame = 0


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDL S   + N     ++T  TPP++           SRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLISHQPNKN---PNSSTQLTPPSS-----------SRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PL+L  CSGAHVLEFLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKR 169
           RLRAAYEENGG  E NPFG+RAVRL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 121 RLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of CSPI02G02570 vs. ExPASy Swiss-Prot
Match: Q9M836 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LSH2 PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.5e-66
Identity = 129/177 (72.88%), Postives = 146/177 (82.49%), Query Frame = 0


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDL S+ + NN  P T+ +T TP     ++ +S  + SRYENQKRRDWNTFCQYLRNH P
Sbjct: 1   MDLISQ-NHNNRNPNTSLSTQTP-----SSFSSPPSSSRYENQKRRDWNTFCQYLRNHHP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PL+L  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 178
           RLRAAYEENGG  E +PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K  T S
Sbjct: 121 RLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQS 171

[Close]

BLAST of CSPI02G02570 vs. ExPASy Swiss-Prot
Match: B8AH02 (Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-65
Identity = 119/153 (77.78%), Postives = 128/153 (83.66%), Query Frame = 0


Query: 31  AASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQ 90
           AA+  TPSRYE QKRRDWNTF QYLRNHRPPL L  CSGAHVLEFLRYLDQFGKTKVH  
Sbjct: 65  AATPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRYLDQFGKTKVHTA 124

Query: 91  TCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREV 150
            CPFFG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGGR E NPF  RAVRLYLREV
Sbjct: 125 ACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAVRLYLREV 184

Query: 151 RDFQAKARGVSYEKKRKRPKQKINTSSTTTHDH 184
           R+ QA+ARGVSYEKK+++  Q  +TS    H H
Sbjct: 185 REHQARARGVSYEKKKRKKPQPADTSGGGGHPH 217

[Close]

BLAST of CSPI02G02570 vs. ExPASy Swiss-Prot
Match: Q0DZF3 (Protein G1-like3 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L3 PE=1 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-65
Identity = 119/153 (77.78%), Postives = 128/153 (83.66%), Query Frame = 0


Query: 31  AASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQ 90
           AA+  TPSRYE QKRRDWNTF QYLRNHRPPL L  CSGAHVLEFLRYLDQFGKTKVH  
Sbjct: 65  AATPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRYLDQFGKTKVHTA 124

Query: 91  TCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREV 150
            CPFFG PNPPAPCPCPLRQAWGSLDAL+GRLRAA+EENGGR E NPF  RAVRLYLREV
Sbjct: 125 ACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAVRLYLREV 184

Query: 151 RDFQAKARGVSYEKKRKRPKQKINTSSTTTHDH 184
           R+ QA+ARGVSYEKK+++  Q  +TS    H H
Sbjct: 185 REHQARARGVSYEKKKRKKPQPADTSGGGGHPH 217

[Close]

BLAST of CSPI02G02570 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.4e-64
Identity = 122/158 (77.22%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 25  TATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGK 84
           T  T+ +A+  +PSRYE+QKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFGK
Sbjct: 26  TGATSASAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFGK 85

Query: 85  TKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVR 144
           TKVH   CPFFG P PPAPCPCPLRQAWGSLDAL+GRLRAAYEENGGR E NPFGARAVR
Sbjct: 86  TKVHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAVR 145

Query: 145 LYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTTHD 183
           LYLREVR+ QA+ARGVSYEKK KR K    +S+   HD
Sbjct: 146 LYLREVREHQARARGVSYEKK-KRKKPPHPSSAAAAHD 182

[Close]

BLAST of CSPI02G02570 vs. ExPASy TrEMBL
Match: A0A0A0LG60 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009550 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 9.7e-101
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHHQDSTT 190
           HDHHQDSTT
Sbjct: 181 HDHHQDSTT 189

[Close]

BLAST of CSPI02G02570 vs. ExPASy TrEMBL
Match: A0A5D3BFP5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001100 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98
Identity = 185/189 (97.88%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSNN  PTTTTTTTTPPTATT+ AASATTPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNDNPTTTTTTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHHQDSTT 190
           HDHHQDSTT
Sbjct: 181 HDHHQDSTT 189

[Close]

BLAST of CSPI02G02570 vs. ExPASy TrEMBL
Match: A0A1S3C396 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC103496393 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98
Identity = 185/189 (97.88%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSNN  PTTTTTTTTPPTATT+ AASATTPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNDNPTTTTTTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHHQDSTT 190
           HDHHQDSTT
Sbjct: 181 HDHHQDSTT 189

[Close]

BLAST of CSPI02G02570 vs. ExPASy TrEMBL
Match: A0A6J1KC51 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=LOC111493577 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.3e-76
Identity = 152/180 (84.44%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 1   MDLFSESSSNN-STPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHR 60
           MDLFS+SSSN    P TTTTTT    A + +++S TTPSRYENQKRRDWNTFCQYLRNHR
Sbjct: 74  MDLFSKSSSNPIPIPPTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNHR 133

Query: 61  PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 120
           PPLALQMCSGAHVLEFLRYLD FGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI
Sbjct: 134 PPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 193

Query: 121 GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTT 180
           GRLRAA+EENGGR E NPFGARAVRLYLREVRDFQ KARGVSYEKKRKRPKQK      T
Sbjct: 194 GRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQKQEGAT 253

[Close]

BLAST of CSPI02G02570 vs. ExPASy TrEMBL
Match: A0A6J1G4J5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita moschata OX=3662 GN=LOC111450676 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.3e-76
Identity = 152/180 (84.44%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 1   MDLFSESSSNN-STPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHR 60
           MDLFS+SSSN    P TTTTTT    A + +++S TTPSRYENQKRRDWNTFCQYLRNHR
Sbjct: 1   MDLFSKSSSNPIPIPPTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNHR 60

Query: 61  PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 120
           PPLALQMCSGAHVLEFLRYLD FGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI
Sbjct: 61  PPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 120

Query: 121 GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTT 180
           GRLRAA+EENGGR E NPFGARAVRLYLREVRDFQ KARGVSYEKKRKRPKQK      T
Sbjct: 121 GRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQKQEGAT 180

[Close]

BLAST of CSPI02G02570 vs. NCBI nr
Match: XP_011648733.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Cucumis sativus] >KGN60768.1 hypothetical protein Csa_019356 [Cucumis sativus])

HSP 1 Score: 375.9 bits (964), Expect = 2.0e-100
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHHQDSTT 190
           HDHHQDSTT
Sbjct: 181 HDHHQDSTT 189

[Close]

BLAST of CSPI02G02570 vs. NCBI nr
Match: XP_008456451.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo] >KAA0063568.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo var. makuwa] >TYJ97894.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 369.0 bits (946), Expect = 2.4e-98
Identity = 185/189 (97.88%), Postives = 186/189 (98.41%), Query Frame = 0


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSNN  PTTTTTTTTPPTATT+ AASATTPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNDNPTTTTTTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180

Query: 181 HDHHQDSTT 190
           HDHHQDSTT
Sbjct: 181 HDHHQDSTT 189

[Close]

BLAST of CSPI02G02570 vs. NCBI nr
Match: XP_038890681.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Benincasa hispida])

HSP 1 Score: 319.3 bits (817), Expect = 2.2e-83
Identity = 166/188 (88.30%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLFSESSSN  T T TTT T   TA  T +ASA TPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNPPT-TYTTTATVAATAPPTASASAATPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTTT 180
           RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK+ T+S+ T
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKV-TNSSAT 180

Query: 181 HDHHQDST 189
           HDH   +T
Sbjct: 181 HDHQNPTT 186

[Close]

BLAST of CSPI02G02570 vs. NCBI nr
Match: XP_023546935.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.4 bits (760), Expect = 9.0e-77
Identity = 153/181 (84.53%), Postives = 159/181 (87.85%), Query Frame = 0


Query: 1   MDLFSESSSN--NSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNH 60
           MDLFS+SSSN     PTTTTTTT    A + +++S TTPSRYENQKRRDWNTFCQYLRNH
Sbjct: 1   MDLFSKSSSNPIPIPPTTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNH 60

Query: 61  RPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
           RPPLALQMCSGAHVLEFLRYLD FGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 61  RPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSST 180
           IGRLRAA+EENGGR E NPFGARAVRLYLREVRDFQ KARGVSYEKKRKRPKQK      
Sbjct: 121 IGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQKQEGA 180

[Close]

BLAST of CSPI02G02570 vs. NCBI nr
Match: XP_022999096.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima])

HSP 1 Score: 295.8 bits (756), Expect = 2.6e-76
Identity = 152/180 (84.44%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 1   MDLFSESSSNN-STPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHR 60
           MDLFS+SSSN    P TTTTTT    A + +++S TTPSRYENQKRRDWNTFCQYLRNHR
Sbjct: 74  MDLFSKSSSNPIPIPPTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNHR 133

Query: 61  PPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 120
           PPLALQMCSGAHVLEFLRYLD FGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI
Sbjct: 134 PPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALI 193

Query: 121 GRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSSTT 180
           GRLRAA+EENGGR E NPFGARAVRLYLREVRDFQ KARGVSYEKKRKRPKQK      T
Sbjct: 194 GRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQKQEGAT 253

[Close]

BLAST of CSPI02G02570 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-67
Identity = 129/168 (76.79%), Postives = 138/168 (82.14%), Query Frame = 0


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDL S   + N     ++T  TPP++           SRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLISHQPNKN---PNSSTQLTPPSS-----------SRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PL+L  CSGAHVLEFLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKR 169
           RLRAAYEENGG  E NPFG+RAVRL+LREVRDFQAKARGVSYEKKRKR
Sbjct: 121 RLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of CSPI02G02570 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 251.5 bits (641), Expect = 5.3e-67
Identity = 129/177 (72.88%), Postives = 146/177 (82.49%), Query Frame = 0


Query: 1   MDLFSESSSNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRP 60
           MDL S+ + NN  P T+ +T TP     ++ +S  + SRYENQKRRDWNTFCQYLRNH P
Sbjct: 1   MDLISQ-NHNNRNPNTSLSTQTP-----SSFSSPPSSSRYENQKRRDWNTFCQYLRNHHP 60

Query: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PL+L  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 178
           RLRAAYEENGG  E +PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K  T S
Sbjct: 121 RLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQS 171

[Close]

BLAST of CSPI02G02570 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-63
Identity = 127/178 (71.35%), Postives = 142/178 (79.78%), Query Frame = 0


Query: 9   SNNSTPTTTTTTTTPPTATTTTAASATTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCS 68
           SNNS+  T  T        +++++ +   SRYENQKRRDWNTF QYLRNHRPPL+L  CS
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCS 83

Query: 69  GAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 128
           GAHVLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EE
Sbjct: 84  GAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE 143

Query: 129 NGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKINTSSTTTHDHHQ 186
           NGG+ E NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP    +TSS++    HQ
Sbjct: 144 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSAVASHQ 201

[Close]

BLAST of CSPI02G02570 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 238.0 bits (606), Expect = 6.1e-63
Identity = 125/164 (76.22%), Postives = 136/164 (82.93%), Query Frame = 0


Query: 8   SSNNSTPTTTTTTTTPPTATTTTAASATTP-SRYENQKRRDWNTFCQYLRNHRPPLALQM 67
           ++N       TTTTT  ++++++  S T   SRYENQKRRDWNTF QYLRNHRPPL+L  
Sbjct: 16  NTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSR 75

Query: 68  CSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAY 127
           CSGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRAA+
Sbjct: 76  CSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAF 135

Query: 128 EENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRP 170
           EENGG  E NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP
Sbjct: 136 EENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of CSPI02G02570 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 231.1 bits (588), Expect = 7.4e-61
Identity = 107/135 (79.26%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 36  TPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFF 95
           TPSRYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLDQFGKTKVH   CP+F
Sbjct: 28  TPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYF 87

Query: 96  GLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQA 155
           G   PP+PC CPL+QAWGSLDALIGRLRAAYEENGGR + NPF ARAVR+YLREVR+ QA
Sbjct: 88  GHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQA 147

Query: 156 KARGVSYE-KKRKRP 170
           KARG+ YE KKRKRP
Sbjct: 148 KARGIPYEKKKRKRP 162

The following BLAST results are available for this feature:

BLAST of CSPI02G02570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNI3	1.5e-66	76.79	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9M836	7.5e-66	72.88	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
B8AH02	1.7e-65	77.78	Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1	[more]
Q0DZF3	1.7e-65	77.78	Protein G1-like3 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L3 PE=1 SV=1	[more]
Q7XDD0	1.4e-64	77.22	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]

BLAST of CSPI02G02570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG60	9.7e-101	100.00	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009550 PE=3 S...	[more]
A0A5D3BFP5	1.2e-98	97.88	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C396	1.2e-98	97.88	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1KC51	1.3e-76	84.44	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G4J5	1.3e-76	84.44	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CSPI02G02570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648733.1	2.0e-100	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Cucumis sativus] >KGN60768.1 hypothe...	[more]
XP_008456451.1	2.4e-98	97.88	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like [Cucumis melo] >KAA00...	[more]
XP_038890681.1	2.2e-83	88.30	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Benincasa hispida]	[more]
XP_023546935.1	9.0e-77	84.53	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022999096.1	2.6e-76	84.44	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima]	[more]

BLAST of CSPI02G02570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28490.1	1.1e-67	76.79	Protein of unknown function (DUF640)	[more]
AT3G04510.1	5.3e-67	72.88	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.2e-63	71.35	Protein of unknown function (DUF640)	[more]
AT3G23290.2	6.1e-63	76.22	Protein of unknown function (DUF640)	[more]
AT1G07090.1	7.4e-61	79.26	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 33..152 e-value: 1.4E-65 score: 219.2
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 39..166 score: 83.004524
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..189
None	No IPR available	PANTHER	PTHR31165:SF15	PROTEIN G1-LIKE5	coord: 4..184
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 4..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G02570.1	CSPI02G02570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus