CSPI02G02410 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G02410
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 1668487 .. 1669633 (-)
RNA-Seq Expression	CSPI02G02410
Synteny	CSPI02G02410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAATATATATATATACCATCAAATCAAAAACTCAAAAAAGATACTCAAAGTTAGAATCTTGTCTTCATTCTCGTCGCCATTGTTGCTCTAAACCAAAAGCTTAGCTTTCTTGTTCATACAGTACTATATTCCAAATGAAGCTCCCTCCAATGGCGGTTCTTCTTCTTTTCCTTATGATCATGCTTCAAGCTCAAGGTATGTACCAACTTTATTGTTAATTAGTTTTGATCTCAAATATATACTTTTCCAACTTGGGTTTTGTTTAGTTATCTTTAGAAACATTATTACTCTATCTTGATTTTTCTTTGTTTTCAAAATCAAGTTAACGTTTTGAAAACGTTTTTGGGTTTTTTTAATGATTATATCTTTTACGATTCTTCTTTATTTCGTTTTAAATACTTAAAGAAAGTTCAAATATTCTGTTAAGAAAAGAAAAACTTAAGGAAACATAAATTTCATAACAAAATACTACAATTTTAACATACATTAATAGTGTTTTTATGCACTTACAAAGTTATTCGATGTCCTTTGTCAAGCAGAAAAAATGAATTTTCTTTTTGAACTTTTTGAAGGGATTCGGTTGTTGGAGAAAGGGATGAGCAAAGAGTACAAGAAAAGTGGAGGTTTTTTGGTAAATAAAAATGGTGGAGATTCATTGATGACAATGAAGAAGAGAGCCCCAATTAGGGCTTTAAGAAAACCATATTCACATTGGCTTCCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTGACTCTTTTTTTTTTTTTTTTCTTTTTTATGAGATTAATTATTATTATTTGAGGCGTACATATAGAATCCGAACGTTGGATCGTCGTTATATTCTTTAGTAAAATTAGTTAACAAAGATGGAACAGATTGAAGAAATCATTCGAAGAGCTAGAAACGCAACGTGGTTGTCAACTTTTTATATGTACGATAGAGAAATTAACCATGTTTGAGGTAGCTACGTTGTGTAGTTTTAGCTTTTAACTAGATCAGTTGAGACTGATTATAAATTTTGAGAATAAAATTCTTTATTAAATAAGATTCAAGAAAATGTTGAATCTTCATTTATTTACTCTCCTACCTGAATTATTTGTATGTGTTTTATTCTACCAC

mRNA sequence

AAAAGAATATATATATATACCATCAAATCAAAAACTCAAAAAAGATACTCAAAGTTAGAATCTTGTCTTCATTCTCGTCGCCATTGTTGCTCTAAACCAAAAGCTTAGCTTTCTTGTTCATACAGTACTATATTCCAAATGAAGCTCCCTCCAATGGCGGTTCTTCTTCTTTTCCTTATGATCATGCTTCAAGCTCAAGGGATTCGGTTGTTGGAGAAAGGGATGAGCAAAGAGTACAAGAAAAGTGGAGGTTTTTTGGTAAATAAAAATGGTGGAGATTCATTGATGACAATGAAGAAGAGAGCCCCAATTAGGGCTTTAAGAAAACCATATTCACATTGGCTTCCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTGACTCTTTTTTTTTTTTTTTTCTTTTTTATGAGATTAATTATTATTATTTGAGGCGTACATATAGAATCCGAACGTTGGATCGTCGTTATATTCTTTAGTAAAATTAGTTAACAAAGATGGAACAGATTGAAGAAATCATTCGAAGAGCTAGAAACGCAACGTGGTTGTCAACTTTTTATATGTACGATAGAGAAATTAACCATGTTTGAGGTAGCTACGTTGTGTAGTTTTAGCTTTTAACTAGATCAGTTGAGACTGATTATAAATTTTGAGAATAAAATTCTTTATTAAATAAGATTCAAGAAAATGTTGAATCTTCATTTATTTACTCTCCTACCTGAATTATTTGTATGTGTTTTATTCTACCAC

Coding sequence (CDS)

ATGAAGCTCCCTCCAATGGCGGTTCTTCTTCTTTTCCTTATGATCATGCTTCAAGCTCAAGGGATTCGGTTGTTGGAGAAAGGGATGAGCAAAGAGTACAAGAAAAGTGGAGGTTTTTTGGTAAATAAAAATGGTGGAGATTCATTGATGACAATGAAGAAGAGAGCCCCAATTAGGGCTTTAAGAAAACCATATTCACATTGGCTTCCAGGCATTCAAGAAGATTATCATGGACCAAGAAGCCATAAATCTAGGCACCATTGA

Protein sequence

MKLPPMAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH*

Homology

[Close]

BLAST of CSPI02G02410 vs. ExPASy TrEMBL
Match: A0A0A0LJ48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 6  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 65
          MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY
Sbjct: 1  MAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRALRKPY 60

Query: 66 SHWLPGIQEDYHGPRSHKSRHH 88
          SHWLPGIQEDYHGPRSHKSRHH
Sbjct: 61 SHWLPGIQEDYHGPRSHKSRHH 82

[Close]

BLAST of CSPI02G02410 vs. ExPASy TrEMBL
Match: A0A5N6RX03 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020903 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-07
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 6  MAVLLLFLMIMLQAQGIRL----LEKGMSKEYKKSG-----GFLVNKNGGDSLMTMKKRA 65
          +++LLL L++  +AQGIRL    +  G  K+++  G     G ++ K+G     TMKKR 
Sbjct: 7  LSLLLLCLLLSHEAQGIRLDKMFMSLGQQKQHEADGNALIAGRILCKDGEHCSGTMKKRV 66

Query: 66 PIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 88
            R L K   HWLP I EDY+GPRSH+ RHH
Sbjct: 67 S-RVLSKKSHHWLPSIHEDYYGPRSHRPRHH 96

[Close]

BLAST of CSPI02G02410 vs. ExPASy TrEMBL
Match: A0A6M2ES64 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.5e-05
Identity = 42/103 (40.78%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 1   MKLPPMAVLLLFLMIMLQAQGIRL-------------LEKGMSKEYKKSGGFL---VNKN 60
           M+   +A LLL   ++ QAQGIRL              EK  SKE K  GG L   +   
Sbjct: 1   MRPSVVASLLLLSFLLQQAQGIRLEKGFKQVGAQKVQAEKSPSKE-KSDGGVLGEAILCK 60

Query: 61  GGDSLMTMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 88
            G    TM+KR      +K   HWLP I EDY+GPR+HK  HH
Sbjct: 61  EGQCTGTMEKRVSKSVSKKSSHHWLPSIHEDYYGPRNHKPNHH 102

[Close]

BLAST of CSPI02G02410 vs. ExPASy TrEMBL
Match: A0A5D2PE55 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A08G105700v1 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-04
Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 9  LLLFLMIMLQAQGIRLLEKGMSKEYK-KSGGFLVNKNG--GDSLMTMK------KRAPIR 68
          LL+FL+++   +GIRL +   S   K + G  + N NG  GD +++ +      KR    
Sbjct: 10 LLVFLIVLSSIEGIRLEKISKSMHAKLQEGSLMKNSNGVRGDDILSKEGHCRGTKRKKAH 69

Query: 69 ALRKPYSHWLPGIQEDYHGPRSHKSRHH 88
           + K   HW+P I EDY GPR H+ RHH
Sbjct: 70 KVFKRSHHWIPSIHEDYRGPRRHRPRHH 97

[Close]

BLAST of CSPI02G02410 vs. ExPASy TrEMBL
Match: A0A0D2U6Z9 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G057200 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-04
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 6  MAVLLLFLMIMLQAQGIRLLE--KGMSKEYKKSGGFLVNKNG--GDSLMTMKKRAPIRAL 65
          +++L+LF++ +   QGIRL +  K    +  + G  + N NG  GD L+  +        
Sbjct: 8  VSLLVLFIIYLSSVQGIRLEKSFKSAGHDPIQEGALMKNSNGAMGDILLCKQGHCTGTKK 67

Query: 66 RKPYSHWLPGIQEDYHGPRSHKSRHH 88
          RK + HWLP I EDY+GPR H+ RHH
Sbjct: 68 RKSH-HWLPSIHEDYYGPRKHRPRHH 92

[Close]

BLAST of CSPI02G02410 vs. NCBI nr
Match: KAG6586348.1 (Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-13
Identity = 51/77 (66.23%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 1  MKLPPMAVLLLFLMIMLQAQGIRLLEKGMSKEYKKSGGFLVNKNGGDSLMTMKKRAPIRA 60
          MK   MAVLLLFL+I  +A+GIRLL+K MSKE K        +NGGD L TMK RAP +A
Sbjct: 1  MKPSSMAVLLLFLIIS-EAEGIRLLDKRMSKEDK--------RNGGDLLGTMKWRAPNKA 60

Query: 61 LRKPYSHWLPGIQEDYH 78
           RKPYSHWLPGIQEDYH
Sbjct: 61 WRKPYSHWLPGIQEDYH 68

[Close]

BLAST of CSPI02G02410 vs. NCBI nr
Match: KAE8126159.1 (hypothetical protein FH972_020903 [Carpinus fangiana])

HSP 1 Score: 64.3 bits (155), Expect = 6.0e-07
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 6  MAVLLLFLMIMLQAQGIRL----LEKGMSKEYKKSG-----GFLVNKNGGDSLMTMKKRA 65
          +++LLL L++  +AQGIRL    +  G  K+++  G     G ++ K+G     TMKKR 
Sbjct: 7  LSLLLLCLLLSHEAQGIRLDKMFMSLGQQKQHEADGNALIAGRILCKDGEHCSGTMKKRV 66

Query: 66 PIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 88
            R L K   HWLP I EDY+GPRSH+ RHH
Sbjct: 67 S-RVLSKKSHHWLPSIHEDYYGPRSHRPRHH 96

[Close]

BLAST of CSPI02G02410 vs. NCBI nr
Match: KAG6769267.1 (hypothetical protein POTOM_024887 [Populus tomentosa])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = 0


Query: 4  PPMAVLLLFLMIML-QAQGIRL-------------LEKGMSKEYKKSGGFLVNKNGGDSL 63
          P + V LL L  +L QAQGIRL              EK  SKE    GG L     G+++
Sbjct: 3  PSVVVSLLLLSFLLQQAQGIRLEKGFKQVGAQKVQAEKSPSKEKSNDGGVL-----GEAI 62

Query: 64 M----TMKKRAPIRALRKPYSHWLPGIQEDYHGPRSHKSRHH 88
          +    TM+KR      +K   HWLP I EDY+GPR+HK +HH
Sbjct: 63 LCKEGTMEKRVSKSVSKKFSHHWLPSIHEDYYGPRNHKPKHH 99

[Close]

BLAST of CSPI02G02410 vs. NCBI nr
Match: TYI14153.1 (hypothetical protein ES332_A08G105700v1 [Gossypium tomentosum])

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-04
Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 9  LLLFLMIMLQAQGIRLLEKGMSKEYK-KSGGFLVNKNG--GDSLMTMK------KRAPIR 68
          LL+FL+++   +GIRL +   S   K + G  + N NG  GD +++ +      KR    
Sbjct: 10 LLVFLIVLSSIEGIRLEKISKSMHAKLQEGSLMKNSNGVRGDDILSKEGHCRGTKRKKAH 69

Query: 69 ALRKPYSHWLPGIQEDYHGPRSHKSRHH 88
           + K   HW+P I EDY GPR H+ RHH
Sbjct: 70 KVFKRSHHWIPSIHEDYRGPRRHRPRHH 97

[Close]

BLAST of CSPI02G02410 vs. NCBI nr
Match: KAG4187193.1 (hypothetical protein ERO13_A08G092000v2 [Gossypium hirsutum] >KAG8485841.1 hypothetical protein CXB51_019232 [Gossypium anomalum])

HSP 1 Score: 54.7 bits (130), Expect = 4.7e-04
Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 9  LLLFLMIMLQAQGIRLLEKGMSKEYK-KSGGFLVNKNG--GDSLMTMK------KRAPIR 68
          LL+FL+++   +GIRL +   S   K + G  + N NG  GD +++ +      KR    
Sbjct: 10 LLVFLIVLSSIEGIRLEKISKSMHPKLQEGSLMKNSNGVRGDDILSKEGHCRGTKRKKAH 69

Query: 69 ALRKPYSHWLPGIQEDYHGPRSHKSRHH 88
           + K   HW+P I EDY GPR H+ RHH
Sbjct: 70 KVFKRSHHWIPSIHEDYRGPRRHRPRHH 97

The following BLAST results are available for this feature:

BLAST of CSPI02G02410 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G02410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ48	1.2e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009400 PE=4 SV=1	[more]
A0A5N6RX03	2.9e-07	43.96	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_020903 PE=4 SV=1	[more]
A0A6M2ES64	3.5e-05	40.78	Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1	[more]
A0A5D2PE55	1.8e-04	37.50	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A08G105700v1 P...	[more]
A0A0D2U6Z9	2.3e-04	38.37	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_010G057200 PE=4 ...	[more]

BLAST of CSPI02G02410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586348.1	1.9e-13	66.23	Ubiquitin-like domain-containing protein CIP73, partial [Cucurbita argyrosperma ...	[more]
KAE8126159.1	6.0e-07	43.96	hypothetical protein FH972_020903 [Carpinus fangiana]	[more]
KAG6769267.1	1.5e-05	41.18	hypothetical protein POTOM_024887 [Populus tomentosa]	[more]
TYI14153.1	3.6e-04	37.50	hypothetical protein ES332_A08G105700v1 [Gossypium tomentosum]	[more]
KAG4187193.1	4.7e-04	37.50	hypothetical protein ERO13_A08G092000v2 [Gossypium hirsutum] >KAG8485841.1 hypot...	[more]

BLAST of CSPI02G02410 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G02410.1	CSPI02G02410.1	mRNA