CSPI02G01560 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G01560
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	zinc finger Ran-binding domain-containing protein 2-like
Location	Chr2: 1091404 .. 1092790 (-)
RNA-Seq Expression	CSPI02G01560
Synteny	CSPI02G01560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAAATTCAAACTTACACACACACCAAATTAACAAACAACCCTTTTAGTTTCATCATAAACACACAACACTTGATCATCAAGCTAAGGTAAGATGATGTTTTTTTCATTAATTAAATTTTACTCAAAAGTATTATTAATATATAATGTGTATGATTCTTTATTAAAATGTTTATTGTTTTTTATATATAGCTAGAGATCAGAGATATGAATATGAATTGGTCAGGAGGAGATTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCCTGTCAAAGATGTGGATATCCAAAATATGGAGGCCCTGACCCAACAACATATGATCAATACAATATCATTCATTCTAAAAGCACAGATGAAGTGTTGGCTGGTGATTGGTATTGCAATTGTGGAGCTCATAACTATGCTAGTAGATCATCTTGTTATAAATGTAATAGTAATGCTTATAAAAGTCTTGATATCGGTGCTTTGCCTGGTTGGAAATCTGGCGATTGGATCTGCTCTAGGTATGTTTAACTTCTCTACCAACCACGTACGTTTCAATTCTGCTTTTCGACTTTTGAATGTTTCCCTTTGATCGTCTTTCAACTTTCACTTTCCAAACATGATTGTTCTCGATAGTTGAGAGAGATCTACATTAGGTATATGTATGTATATATGCTCTCTCCCAACAGTTGTTAGCTCAGCAAGAGATCTAGACATTCCAAACACCATTTTTTAAAGACGTTGGAGATGTACTTTATCCGGACGATGGTTTCATTCGCATCAAACTAAGTTTTAGATATAAAAATAATGTAGTATTTTTCGATGCCATGTTTTGTATAATTTAACTGAAATGATTTGAAATGGGAATATGTTGAAATTTTGTGCAGAATAGGATGTGAAACCCACAATTATGCCAGTAGAATGGAATGTTACAAATGCAAAGCTCCAAGGCATTTTGGTAAGAACATCAGATTTTCTTCGCTCTTTTTATTTCTTTAGGTTCAAAAGCTCCTTTCAAACTTTTGACATATGGATCGAATGCATACGTCTATGCATTGCAATGCTAAATAATATATACATATATTTTGTCGAGATTTTTAGTTAACTAGTTGAGCTATGCTTGAGTAGTAAAACAAATCGTTTTTCTCTTTTTTGTTTCAGGAGGAGCTGTTTGAAAGTTGTGGAAAGCTGACTTAGGAAGAACTATTTTGGTGATGCTAAATATTTGGCCAACTTACAAGCTTCCAGCATCTGATGCTCTCTCCAATTTGCTTCTTTCTGTTTTGCCCTTTTTTCAAGAGATTGGGACTTAATGCATGAAAAGCTCAACAATTCCCATTCTTAAATTAATCTCACATTTCACTAATTAATTAGAATTATTATTCAATTTT

mRNA sequence

TCCAAATTCAAACTTACACACACACCAAATTAACAAACAACCCTTTTAGTTTCATCATAAACACACAACACTTGATCATCAAGCTAAGCTAGAGATCAGAGATATGAATATGAATTGGTCAGGAGGAGATTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCCTGTCAAAGATGTGGATATCCAAAATATGGAGGCCCTGACCCAACAACATATGATCAATACAATATCATTCATTCTAAAAGCACAGATGAAGTGTTGGCTGGTGATTGGTATTGCAATTGTGGAGCTCATAACTATGCTAGTAGATCATCTTGTTATAAATGTAATAGTAATGCTTATAAAAGTCTTGATATCGGTGCTTTGCCTGGTTGGAAATCTGGCGATTGGATCTGCTCTAGAATAGGATGTGAAACCCACAATTATGCCAGTAGAATGGAATGTTACAAATGCAAAGCTCCAAGGCATTTTGGAGGAGCTGTTTGAAAGTTGTGGAAAGCTGACTTAGGAAGAACTATTTTGGTGATGCTAAATATTTGGCCAACTTACAAGCTTCCAGCATCTGATGCTCTCTCCAATTTGCTTCTTTCTGTTTTGCCCTTTTTTCAAGAGATTGGGACTTAATGCATGAAAAGCTCAACAATTCCCATTCTTAAATTAATCTCACATTTCACTAATTAATTAGAATTATTATTCAATTTT

Coding sequence (CDS)

ATGAATATGAATTGGTCAGGAGGAGATTGGATGTGTGGTGTTTGTGAACATGTAAACTTCAAGAAAAGAGAAGCCTGTCAAAGATGTGGATATCCAAAATATGGAGGCCCTGACCCAACAACATATGATCAATACAATATCATTCATTCTAAAAGCACAGATGAAGTGTTGGCTGGTGATTGGTATTGCAATTGTGGAGCTCATAACTATGCTAGTAGATCATCTTGTTATAAATGTAATAGTAATGCTTATAAAAGTCTTGATATCGGTGCTTTGCCTGGTTGGAAATCTGGCGATTGGATCTGCTCTAGAATAGGATGTGAAACCCACAATTATGCCAGTAGAATGGAATGTTACAAATGCAAAGCTCCAAGGCATTTTGGAGGAGCTGTTTGA

Protein sequence

MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGDWYCNCGAHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCKAPRHFGGAV*

Homology

[Close]

BLAST of CSPI02G01560 vs. ExPASy Swiss-Prot
Match: Q5ZLX5 (Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.2e-07
Identity = 34/93 (36.56%), Postives = 42/93 (45.16%), Query Frame = 0


Query: 2  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNI---IHSKSTDEV 61
          N   S GDW+C    C +VNF +R +C RCG  K             I   +  KS    
Sbjct: 5  NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLF 64

Query: 62 LAGDWYC-NCGAHNYASRSSCYKCNSNAYKSLD 89
           A DW C  CG  N+A RS C  CN+  Y  L+
Sbjct: 65 SANDWQCKTCGNVNWARRSECNMCNTPKYAKLE 97

[Close]

BLAST of CSPI02G01560 vs. ExPASy Swiss-Prot
Match: O95218 (Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ZRANB2 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 33/93 (35.48%), Postives = 41/93 (44.09%), Query Frame = 0


Query: 2  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNI---IHSKSTDEV 61
          N   S GDW+C    C +VNF +R +C RCG  K             I   +  KS    
Sbjct: 5  NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLF 64

Query: 62 LAGDWYC-NCGAHNYASRSSCYKCNSNAYKSLD 89
           A DW C  C   N+A RS C  CN+  Y  L+
Sbjct: 65 SANDWQCKTCSNVNWARRSECNMCNTPKYAKLE 97

[Close]

BLAST of CSPI02G01560 vs. ExPASy Swiss-Prot
Match: Q9R020 (Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=Zranb2 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 33/93 (35.48%), Postives = 41/93 (44.09%), Query Frame = 0


Query: 2  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNI---IHSKSTDEV 61
          N   S GDW+C    C +VNF +R +C RCG  K             I   +  KS    
Sbjct: 5  NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLF 64

Query: 62 LAGDWYC-NCGAHNYASRSSCYKCNSNAYKSLD 89
           A DW C  C   N+A RS C  CN+  Y  L+
Sbjct: 65 SANDWQCKTCSNVNWARRSECNMCNTPKYAKLE 97

[Close]

BLAST of CSPI02G01560 vs. ExPASy Swiss-Prot
Match: Q19QU3 (Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 33/93 (35.48%), Postives = 41/93 (44.09%), Query Frame = 0


Query: 2  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNI---IHSKSTDEV 61
          N   S GDW+C    C +VNF +R +C RCG  K             I   +  KS    
Sbjct: 5  NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLF 64

Query: 62 LAGDWYC-NCGAHNYASRSSCYKCNSNAYKSLD 89
           A DW C  C   N+A RS C  CN+  Y  L+
Sbjct: 65 SANDWQCKTCSNVNWARRSECNMCNTPKYAKLE 97

[Close]

BLAST of CSPI02G01560 vs. ExPASy Swiss-Prot
Match: Q5R580 (Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii OX=9601 GN=ZRANB2 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 33/93 (35.48%), Postives = 41/93 (44.09%), Query Frame = 0


Query: 2  NMNWSGGDWMC--GVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNI---IHSKSTDEV 61
          N   S GDW+C    C +VNF +R +C RCG  K             I   +  KS    
Sbjct: 5  NFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLF 64

Query: 62 LAGDWYC-NCGAHNYASRSSCYKCNSNAYKSLD 89
           A DW C  C   N+A RS C  CN+  Y  L+
Sbjct: 65 SANDWQCKTCSNVNWARRSECNMCNTPKYAKLE 97

[Close]

BLAST of CSPI02G01560 vs. ExPASy TrEMBL
Match: A0A0A0LIX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006080 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.1e-78
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGD 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGD
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGD 60

Query: 61  WYCNCGAHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120
           WYCNCGAHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK
Sbjct: 61  WYCNCGAHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120

Query: 121 CKAPRHFG 129
           CKAPRHFG
Sbjct: 121 CKAPRHFG 128

[Close]

BLAST of CSPI02G01560 vs. ExPASy TrEMBL
Match: A0A1S3C6B6 (uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC103497392 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 8.0e-78
Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGD 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYDQYNIIHSKSTDEVLAGD
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYDQYNIIHSKSTDEVLAGD 60

Query: 61  WYCNCGAHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120
           WYCNCGAHNYASRSSCY+CNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK
Sbjct: 61  WYCNCGAHNYASRSSCYRCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120

Query: 121 CKAPRHFGGAV 132
           CK PR FGGAV
Sbjct: 121 CKTPRDFGGAV 131

[Close]

BLAST of CSPI02G01560 vs. ExPASy TrEMBL
Match: A0A5D3BFH7 (Putative RNA-binding protein C17H9.04c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00090 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 9.5e-71
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 11  MCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGDWYCNCGAHNY 70
           MCGVCEHVNFKKREACQRCGYPKYGGPDP+TYDQYNIIHSKSTDEVLAGDWYCNCGAHNY
Sbjct: 1   MCGVCEHVNFKKREACQRCGYPKYGGPDPSTYDQYNIIHSKSTDEVLAGDWYCNCGAHNY 60

Query: 71  ASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCKAPRHFGGA 130
           ASRSSCY+CNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCKAPR FGGA
Sbjct: 61  ASRSSCYRCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCKAPRDFGGA 120

Query: 131 V 132
           V
Sbjct: 121 V 121

[Close]

BLAST of CSPI02G01560 vs. ExPASy TrEMBL
Match: A0A5A7V2V3 (Putative RNA-binding protein C17H9.04c OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001550 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.8e-70
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 11  MCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGDWYCNCGAHNY 70
           MCGVCEHVNFKKREACQRCGYPKYGGPDP+TYDQYNIIHSKSTDEVLAGDWYCNCGAHNY
Sbjct: 1   MCGVCEHVNFKKREACQRCGYPKYGGPDPSTYDQYNIIHSKSTDEVLAGDWYCNCGAHNY 60

Query: 71  ASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCKAPRHFGGA 130
           ASRSSCY+CNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCK PR FGGA
Sbjct: 61  ASRSSCYRCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCKTPRDFGGA 120

Query: 131 V 132
           V
Sbjct: 121 V 121

[Close]

BLAST of CSPI02G01560 vs. ExPASy TrEMBL
Match: A0A6J1CPG4 (uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=3673 GN=LOC111013106 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.3e-64
Identity = 108/132 (81.82%), Postives = 117/132 (88.64%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGD 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTY+ +   H      +LAGD
Sbjct: 3   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYEYHKTDH----QALLAGD 62

Query: 61  WYCNCGAHNYASRSSCYKCNSNAYKSLD-IGALPGWKSGDWICSRIGCETHNYASRMECY 120
           WYCNCGAHNYASRS+CY+CNSNA+K++D IGALPGWKSGDWIC+RIGCE HNYASRMECY
Sbjct: 63  WYCNCGAHNYASRSNCYRCNSNAFKNVDNIGALPGWKSGDWICTRIGCEMHNYASRMECY 122

Query: 121 KCKAPRHFGGAV 132
           KC  PR FGGAV
Sbjct: 123 KCNTPRDFGGAV 130

[Close]

BLAST of CSPI02G01560 vs. NCBI nr
Match: XP_004139322.1 (zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus] >XP_031736555.1 zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus] >KAE8651526.1 hypothetical protein Csa_019441 [Cucumis sativus])

HSP 1 Score: 307.0 bits (785), Expect = 7.9e-80
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGD 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGD
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGD 60

Query: 61  WYCNCGAHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120
           WYCNCGAHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK
Sbjct: 61  WYCNCGAHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120

Query: 121 CKAPRHFGGAV 132
           CKAPRHFGGAV
Sbjct: 121 CKAPRHFGGAV 131

[Close]

BLAST of CSPI02G01560 vs. NCBI nr
Match: XP_008457786.1 (PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >XP_008457794.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo])

HSP 1 Score: 299.3 bits (765), Expect = 1.7e-77
Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGD 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+TYDQYNIIHSKSTDEVLAGD
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSTYDQYNIIHSKSTDEVLAGD 60

Query: 61  WYCNCGAHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120
           WYCNCGAHNYASRSSCY+CNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK
Sbjct: 61  WYCNCGAHNYASRSSCYRCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120

Query: 121 CKAPRHFGGAV 132
           CK PR FGGAV
Sbjct: 121 CKTPRDFGGAV 131

[Close]

BLAST of CSPI02G01560 vs. NCBI nr
Match: TYJ97799.1 (putative RNA-binding protein C17H9.04c [Cucumis melo var. makuwa])

HSP 1 Score: 275.8 bits (704), Expect = 2.0e-70
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 11  MCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGDWYCNCGAHNY 70
           MCGVCEHVNFKKREACQRCGYPKYGGPDP+TYDQYNIIHSKSTDEVLAGDWYCNCGAHNY
Sbjct: 1   MCGVCEHVNFKKREACQRCGYPKYGGPDPSTYDQYNIIHSKSTDEVLAGDWYCNCGAHNY 60

Query: 71  ASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCKAPRHFGGA 130
           ASRSSCY+CNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCKAPR FGGA
Sbjct: 61  ASRSSCYRCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCKAPRDFGGA 120

Query: 131 V 132
           V
Sbjct: 121 V 121

[Close]

BLAST of CSPI02G01560 vs. NCBI nr
Match: KAA0061590.1 (putative RNA-binding protein C17H9.04c [Cucumis melo var. makuwa])

HSP 1 Score: 274.2 bits (700), Expect = 5.7e-70
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 11  MCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGDWYCNCGAHNY 70
           MCGVCEHVNFKKREACQRCGYPKYGGPDP+TYDQYNIIHSKSTDEVLAGDWYCNCGAHNY
Sbjct: 1   MCGVCEHVNFKKREACQRCGYPKYGGPDPSTYDQYNIIHSKSTDEVLAGDWYCNCGAHNY 60

Query: 71  ASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCKAPRHFGGA 130
           ASRSSCY+CNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCK PR FGGA
Sbjct: 61  ASRSSCYRCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCKTPRDFGGA 120

Query: 131 V 132
           V
Sbjct: 121 V 121

[Close]

BLAST of CSPI02G01560 vs. NCBI nr
Match: XP_038890693.1 (zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida])

HSP 1 Score: 271.2 bits (692), Expect = 4.8e-69
Identity = 118/131 (90.08%), Postives = 124/131 (94.66%), Query Frame = 0


Query: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGD 60
           MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDP+ YDQY  IHSK TDEVLAGD
Sbjct: 1   MNMNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPSAYDQY--IHSK-TDEVLAGD 60

Query: 61  WYCNCGAHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYK 120
           WYCNCGAHNYASRS+CY+C  NAYK+LD+GALPGWKSGDWIC+RIGCETHNYASRMECYK
Sbjct: 61  WYCNCGAHNYASRSTCYRC--NAYKTLDVGALPGWKSGDWICTRIGCETHNYASRMECYK 120

Query: 121 CKAPRHFGGAV 132
           CKAPR FGGAV
Sbjct: 121 CKAPRDFGGAV 126

[Close]

BLAST of CSPI02G01560 vs. TAIR 10
Match: AT2G26695.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 179.1 bits (453), Expect = 2.3e-45
Identity = 78/144 (54.17%), Postives = 96/144 (66.67%), Query Frame = 0


Query: 3   MNWSGGDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGDWY 62
           M+W+GGDW+CG C+H NFKKRE+CQ+CGYPK+GG D +TY  YN        EV+AGDWY
Sbjct: 1   MSWTGGDWLCGACQHANFKKRESCQKCGYPKFGGVDVSTY-LYN------RTEVMAGDWY 60

Query: 63  C---NCGAHNYASRSSCYKC--------------NSNAYKSLDIGALPGWKSGDWICSRI 122
           C   NCG+HNYASR+SCY+C                 AY +      PGWK+GDW+C R+
Sbjct: 61  CGALNCGSHNYASRTSCYRCGMIKVEYTEQYYGAQMVAYGNDGAACPPGWKTGDWVCPRV 120

Query: 123 GCETHNYASRMECYKCKAPRHFGG 130
           GC  HNYASR EC+KCK  R +GG
Sbjct: 121 GCGVHNYASRAECFKCKTTRDYGG 137

[Close]

BLAST of CSPI02G01560 vs. TAIR 10
Match: AT3G15680.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-29
Identity = 64/154 (41.56%), Postives = 80/154 (51.95%), Query Frame = 0


Query: 8   GDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNI-------IHSKSTDEVLAGD 67
           GDW C  C H+NF++R++CQRCG  + G       D  N            +  +V  GD
Sbjct: 5   GDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRAMSAFGFTTGSDVRPGD 64

Query: 68  WYC---NCGAHNYASRSSCYKCNS----------------NAYKSLDI--------GALP 127
           WYC   NCG HN+ASRS+C+KC +                 A    DI        G   
Sbjct: 65  WYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPGNGGRS 124

[Close]

BLAST of CSPI02G01560 vs. TAIR 10
Match: AT5G25490.1 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 121.3 bits (303), Expect = 5.7e-28
Identity = 57/158 (36.08%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 8   GDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQY------NIIHSKSTDEVLAGDW 67
           GDW C +C H+NF++R++CQRC  P+ GG        +      +     +  +V  GDW
Sbjct: 5   GDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVRPGDW 64

Query: 68  YCN---CGAHNYASRSSCYKCN-------------SNAYKSLDIGALPG----------- 126
           YCN   CG HN+A+RSSC+KC              +  +  +++G   G           
Sbjct: 65  YCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGSSSGG 124

[Close]

BLAST of CSPI02G01560 vs. TAIR 10
Match: AT2G17975.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 79.0 bits (193), Expect = 3.3e-15
Identity = 55/208 (26.44%), Postives = 75/208 (36.06%), Query Frame = 0


Query: 8   GDWMCGVCEHVNFKKREACQRCGYPK--------------------YGGPDPTTYDQYN- 67
           GDW+C  C + N+  RE C++CG  K                    Y    P ++DQ   
Sbjct: 50  GDWICTGCTNNNYASREKCKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQPGS 109

Query: 68  -IIHSKSTD------EVLAGDWYCNCGAHNYASRSSCYKCN------------------- 126
            +  S +T+      E  +GDW C CG HNY+SR  C KCN                   
Sbjct: 110 LLAFSNATNQASVHKEWRSGDWICRCGFHNYSSRIQCKKCNEIAPLALGTKRLASEALAH 169

[Close]

BLAST of CSPI02G01560 vs. TAIR 10
Match: AT1G48570.1 (zinc finger (Ran-binding) family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 39/119 (32.77%), Postives = 55/119 (46.22%), Query Frame = 0


Query: 8   GDWMCGVCEHVNFKKREACQRCGYPKYGGPDPTTYDQYNIIHSKSTDEVLAGDWYC-NCG 67
           GDW+C  C  +NF + ++C +C   K  GP  T+    NI+  K       GDW C  CG
Sbjct: 338 GDWLCPECSFLNFTRNQSCLKC---KAKGPKKTS--MVNIVEMKK------GDWNCTGCG 397

Query: 68  AHNYASRSSCYKCNSNAYKSLDIGALPGWKSGDWICSRIGCETHNYASRMECYKCKAPR 126
             N+AS   C +C    +K+L        + GDW C    C+  N+     C KC+  R
Sbjct: 398 YMNFASNKQCRECREQRHKTLA-------EPGDWECP--SCDFVNFRRNDACKKCECKR 436

The following BLAST results are available for this feature:

BLAST of CSPI02G01560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZLX5	3.2e-07	36.56	Zinc finger Ran-binding domain-containing protein 2 OS=Gallus gallus OX=9031 GN=...	[more]
O95218	1.6e-06	35.48	Zinc finger Ran-binding domain-containing protein 2 OS=Homo sapiens OX=9606 GN=Z...	[more]
Q9R020	1.6e-06	35.48	Zinc finger Ran-binding domain-containing protein 2 OS=Mus musculus OX=10090 GN=...	[more]
Q19QU3	1.6e-06	35.48	Zinc finger Ran-binding domain-containing protein 2 OS=Sus scrofa OX=9823 GN=ZRA...	[more]
Q5R580	1.6e-06	35.48	Zinc finger Ran-binding domain-containing protein 2 OS=Pongo abelii OX=9601 GN=Z...	[more]

BLAST of CSPI02G01560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIX1	2.1e-78	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006080 PE=4 SV=1	[more]
A0A1S3C6B6	8.0e-78	96.95	uncharacterized RNA-binding protein C17H9.04c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5D3BFH7	9.5e-71	97.52	Putative RNA-binding protein C17H9.04c OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5A7V2V3	2.8e-70	96.69	Putative RNA-binding protein C17H9.04c OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1CPG4	2.3e-64	81.82	uncharacterized RNA-binding protein C17H9.04c-like OS=Momordica charantia OX=367...	[more]

BLAST of CSPI02G01560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139322.1	7.9e-80	100.00	zinc finger Ran-binding domain-containing protein 2 [Cucumis sativus] >XP_031736...	[more]
XP_008457786.1	1.7e-77	96.95	PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo] >XP_0084...	[more]
TYJ97799.1	2.0e-70	97.52	putative RNA-binding protein C17H9.04c [Cucumis melo var. makuwa]	[more]
KAA0061590.1	5.7e-70	96.69	putative RNA-binding protein C17H9.04c [Cucumis melo var. makuwa]	[more]
XP_038890693.1	4.8e-69	90.08	zinc finger Ran-binding domain-containing protein 2-like [Benincasa hispida]	[more]

BLAST of CSPI02G01560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26695.1	2.3e-45	54.17	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT3G15680.1	1.0e-29	41.56	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT5G25490.1	5.7e-28	36.08	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	3.3e-15	26.44	zinc finger (Ran-binding) family protein	[more]
AT1G48570.1	1.5e-12	32.77	zinc finger (Ran-binding) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 59..82 e-value: 0.0034 score: 26.6 coord: 8..32 e-value: 4.3E-6 score: 36.2 coord: 98..124 e-value: 9.8E-6 score: 35.1
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 96..125 e-value: 3.0E-8 score: 32.8 coord: 8..34 e-value: 3.2E-4 score: 20.0
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 10..29
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 100..121
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 6..35 score: 8.817719
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS50199	ZF_RANBP2_2	coord: 96..127 score: 9.540421
None	No IPR available	GENE3D	4.10.1060.10		coord: 1..37 e-value: 7.7E-10 score: 39.9 coord: 49..85 e-value: 3.0E-9 score: 38.0 coord: 93..127 e-value: 2.0E-11 score: 44.9
None	No IPR available	PANTHER	PTHR23111:SF41	ZINC FINGER, RANBP2-TYPE-RELATED	coord: 2..128
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 2..128
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 94..127
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 2..36
IPR036443	Zinc finger, RanBP2-type superfamily	SUPERFAMILY	90209	Ran binding protein zinc finger-like	coord: 55..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G01560.1	CSPI02G01560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding