CSPI02G01500 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G01500
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Reticulon-like protein
Location	Chr2: 1051449 .. 1051739 (+)
RNA-Seq Expression	CSPI02G01500
Synteny	CSPI02G01500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACTCTTCTGAAACCGTACAAACTAAGGGGGTGGAAATCGCCGATGATAATATTAACAATGATCAACAACTCATTACTCTATCTCCCCCGCCGTTCTCTAATTCCGACAAAATGGACGATTCTCCGTCGCTTCTGCCAGAGGACGAGGCAGCGGAGAGTTCTCAAATGTTAAAGAAAAAGCAACATGTTCATCGTGTTCTTGGCGCCGGAAAGCGTACGGCTAATCTCTCTTTGTGTTTTTCCAATTCTATATTTTTTTTCATCCCTAAAAGTGACCATAAATGA

mRNA sequence

ATGGCAGACTCTTCTGAAACCGTACAAACTAAGGGGGTGGAAATCGCCGATGATAATATTAACAATGATCAACAACTCATTACTCTATCTCCCCCGCCGTTCTCTAATTCCGACAAAATGGACGATTCTCCGTCGCTTCTGCCAGAGGACGAGGCAGCGGAGAGTTCTCAAATGTTAAAGAAAAAGCAACATGTTCATCGTGTTCTTGGCGCCGGAAAGCGTACGGCTAATCTCTCTTTGTGTTTTTCCAATTCTATATTTTTTTTCATCCCTAAAAGTGACCATAAATGA

Coding sequence (CDS)

ATGGCAGACTCTTCTGAAACCGTACAAACTAAGGGGGTGGAAATCGCCGATGATAATATTAACAATGATCAACAACTCATTACTCTATCTCCCCCGCCGTTCTCTAATTCCGACAAAATGGACGATTCTCCGTCGCTTCTGCCAGAGGACGAGGCAGCGGAGAGTTCTCAAATGTTAAAGAAAAAGCAACATGTTCATCGTGTTCTTGGCGCCGGAAAGCGTACGGCTAATCTCTCTTTGTGTTTTTCCAATTCTATATTTTTTTTCATCCCTAAAAGTGACCATAAATGA

Protein sequence

MADSSETVQTKGVEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLLPEDEAAESSQMLKKKQHVHRVLGAGKRTANLSLCFSNSIFFFIPKSDHK*

Homology

[Close]

BLAST of CSPI02G01500 vs. ExPASy TrEMBL
Match: A0A0A0KBC8 (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G006830 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.8e-19
Identity = 58/73 (79.45%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 1  MADSSETVQTKGVEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLLPEDEAAESSQMLK 60
          MADSSETVQ K VEIADDNINNDQ  IT SPPP SN +KMD S  L PEDE AESSQML+
Sbjct: 1  MADSSETVQPKAVEIADDNINNDQHPITPSPPPSSNFNKMDHSLPLSPEDETAESSQMLE 60

Query: 61 KKQHVHRVLGAGK 74
          KKQ VHRVLGAGK
Sbjct: 61 KKQPVHRVLGAGK 73

[Close]

BLAST of CSPI02G01500 vs. ExPASy TrEMBL
Match: A0A5D3CRK8 (Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold268G00270 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.0e-18
Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MADSSETVQTKGVEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLLPEDEAAESSQMLK 60
          MAD SETVQ K VEIADDNINNDQQ IT SPP  SNSDK+D SP   PEDEAAESS+ML+
Sbjct: 1  MADPSETVQPKAVEIADDNINNDQQPITPSPPLSSNSDKVDHSP---PEDEAAESSEMLR 60

Query: 61 KKQHVHRVLGAGK 74
          KKQ VHRVLG+GK
Sbjct: 61 KKQPVHRVLGSGK 70

[Close]

BLAST of CSPI02G01500 vs. ExPASy TrEMBL
Match: A0A1S3C9M8 (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103498001 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.0e-18
Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MADSSETVQTKGVEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLLPEDEAAESSQMLK 60
          MAD SETVQ K VEIADDNINNDQQ IT SPP  SNSDK+D SP   PEDEAAESS+ML+
Sbjct: 1  MADPSETVQPKAVEIADDNINNDQQPITPSPPLSSNSDKVDHSP---PEDEAAESSEMLR 60

Query: 61 KKQHVHRVLGAGK 74
          KKQ VHRVLG+GK
Sbjct: 61 KKQPVHRVLGSGK 70

[Close]

BLAST of CSPI02G01500 vs. NCBI nr
Match: KGN60674.2 (hypothetical protein Csa_023916, partial [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 9.4e-38
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 12 GVEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLLPEDEAAESSQMLKKKQHVHRVLGA 71
          GVEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLLPEDEAAESSQMLKKKQHVHRVLGA
Sbjct: 1  GVEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLLPEDEAAESSQMLKKKQHVHRVLGA 60

Query: 72 GKRTANLSLCFSNSIFFFIPKSDHK 97
           KRTANLSLCFSNS+FFFIPKSDHK
Sbjct: 61 EKRTANLSLCFSNSLFFFIPKSDHK 85

[Close]

BLAST of CSPI02G01500 vs. NCBI nr
Match: XP_011656361.2 (reticulon-like protein B5 [Cucumis sativus] >KGN45697.1 hypothetical protein Csa_005724 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 5.7e-19
Identity = 58/73 (79.45%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 1  MADSSETVQTKGVEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLLPEDEAAESSQMLK 60
          MADSSETVQ K VEIADDNINNDQ  IT SPPP SN +KMD S  L PEDE AESSQML+
Sbjct: 1  MADSSETVQPKAVEIADDNINNDQHPITPSPPPSSNFNKMDHSLPLSPEDETAESSQMLE 60

Query: 61 KKQHVHRVLGAGK 74
          KKQ VHRVLGAGK
Sbjct: 61 KKQPVHRVLGAGK 73

[Close]

BLAST of CSPI02G01500 vs. NCBI nr
Match: XP_008458672.1 (PREDICTED: reticulon-like protein B2 [Cucumis melo] >TYK14030.1 reticulon-like protein B2 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 8.3e-18
Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MADSSETVQTKGVEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLLPEDEAAESSQMLK 60
          MAD SETVQ K VEIADDNINNDQQ IT SPP  SNSDK+D SP   PEDEAAESS+ML+
Sbjct: 1  MADPSETVQPKAVEIADDNINNDQQPITPSPPLSSNSDKVDHSP---PEDEAAESSEMLR 60

Query: 61 KKQHVHRVLGAGK 74
          KKQ VHRVLG+GK
Sbjct: 61 KKQPVHRVLGSGK 70

[Close]

BLAST of CSPI02G01500 vs. NCBI nr
Match: XP_038907010.1 (reticulon-like protein B2 [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-06
Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 1  MADSSETVQTKGVEIADDNINNDQQLITLSPPPFSNSDKMDDSPSLLPEDEAAESSQMLK 60
          MA+ SET + K VEIAD           L   P SNSD++D SP L  E+ AAE S+ML 
Sbjct: 1  MAEPSETAEPKTVEIADKITE------PLPSLPSSNSDEVDASPPLPTEEAAAEGSEMLG 60

Query: 61 KKQHVHRVLGAGK 74
          KKQ VHRVLGAGK
Sbjct: 61 KKQSVHRVLGAGK 67

The following BLAST results are available for this feature:

BLAST of CSPI02G01500 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G01500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBC8	2.8e-19	79.45	Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G006830 PE=4 SV=1	[more]
A0A5D3CRK8	4.0e-18	78.08	Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S3C9M8	4.0e-18	78.08	Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103498001 PE=4 SV=1	[more]

BLAST of CSPI02G01500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60674.2	9.4e-38	97.65	hypothetical protein Csa_023916, partial [Cucumis sativus]	[more]
XP_011656361.2	5.7e-19	79.45	reticulon-like protein B5 [Cucumis sativus] >KGN45697.1 hypothetical protein Csa...	[more]
XP_008458672.1	8.3e-18	78.08	PREDICTED: reticulon-like protein B2 [Cucumis melo] >TYK14030.1 reticulon-like p...	[more]
XP_038907010.1	7.3e-06	54.79	reticulon-like protein B2 [Benincasa hispida]	[more]

BLAST of CSPI02G01500 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G01500.1	CSPI02G01500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005643	nuclear pore