CSPI02G01340 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G01340
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 917300 .. 918008 (-)
RNA-Seq Expression	CSPI02G01340
Synteny	CSPI02G01340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATCAGTTTATATACATGTATCCGTACGTCGAATGAAGGTCATCGACGATCTAATAACAAACTAAAATTAGAAGAAAAGTTCAAAGAGAAATTAAACTCGTTTTTGCTTGCCTTCAATTTGTCTCTTCTCTGTCGATCAAGAGAAATCTACTCCAAGCGAACGAATCACGGCGCTGTATGTTATAACGGCCGGTGAGAAATTAAACCGTATACCTAACTCCTCCGATCAATTTGATACCTAATCAAGATTCCGATTCACCTTCAATTCCTTCAGAATCGGAGTTCAATTACCGATCGGAGGATCTCGCGGGCGAAAAGAACGTTGATTGTCGAAATAGGAGGGAAGAAAACAACAATCGACGATGGAATTAGGCGATTTAATCAGTAATATCATGATCGTGCCAACAAAGAAGCATGGAGATGCAACGGCCGAGGATATAAAATCTGGTTTTCTGTTGCTTGATCATCCGGAAGCATCGCTTTCGAAAACTGGTTTTCCGGCGGTTTCTGATGCGGAGTTGCGTTGACTGAGAAGAGTGAGCGACGGCGTATGCGAGGGACATTACGGTGGAGACCGGTGGCCGGGAGAATTTGAGAAGGAGAGAAGAGATGGGAAAAGGATTTGTTGAACGGAGTTTGAGGAAATGGAGGATGAAGAAATGGTGTATTTATAGGGAAGGGATATGGACCTGAAGTTTACGCTGTCG

mRNA sequence

CTAATCAGTTTATATACATGTATCCGTACGTCGAATGAAGGTCATCGACGATCTAATAACAAACTAAAATTAGAAGAAAAGTTCAAAGAGAAATTAAACTCGTTTTTGCTTGCCTTCAATTTGTCTCTTCTCTGTCGATCAAGAGAAATCTACTCCAAGCGAACGAATCACGGCGCTGTATGTTATAACGGCCGGTGAGAAATTAAACCGTATACCTAACTCCTCCGATCAATTTGATACCTAATCAAGATTCCGATTCACCTTCAATTCCTTCAGAATCGGAGTTCAATTACCGATCGGAGGATCTCGCGGGCGAAAAGAACGTTGATTGTCGAAATAGGAGGGAAGAAAACAACAATCGACGATGGAATTAGGCGATTTAATCAGTAATATCATGATCGTGCCAACAAAGAAGCATGGAGATGCAACGGCCGAGGATATAAAATCTGGTTTTCTGTTGCTTGATCATCCGGAAGCATCGCTTTCGAAAACTGGTTTTCCGGCGGTTTCTGATGCGGAGTTGCGTTGACTGAGAAGAGTGAGCGACGGCGTATGCGAGGGACATTACGGTGGAGACCGGTGGCCGGGAGAATTTGAGAAGGAGAGAAGAGATGGGAAAAGGATTTGTTGAACGGAGTTTGAGGAAATGGAGGATGAAGAAATGGTGTATTTATAGGGAAGGGATATGGACCTGAAGTTTACGCTGTCG

Coding sequence (CDS)

ATGGAATTAGGCGATTTAATCAGTAATATCATGATCGTGCCAACAAAGAAGCATGGAGATGCAACGGCCGAGGATATAAAATCTGGTTTTCTGTTGCTTGATCATCCGGAAGCATCGCTTTCGAAAACTGGTTTTCCGGCGGTTTCTGATGCGGAGTTGCGTTGA

Protein sequence

MELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAELR*

Homology

[Close]

BLAST of CSPI02G01340 vs. ExPASy TrEMBL
Match: A0A5A7V070 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001340 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-19
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAELR 55
          ++LGDLI NIMIVPTKKHGDATAEDI+SGFLLLDHPEASLSKTGFPAVS+AELR
Sbjct: 2  VDLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAELR 55

[Close]

BLAST of CSPI02G01340 vs. ExPASy TrEMBL
Match: A0A5D3CHF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00110 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-19
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAELR 55
          ++LGDLI NIMIVPTKKHGDATAEDI+SGFLLLDHPEASLSKTGFPAVS+AELR
Sbjct: 2  VDLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAELR 55

[Close]

BLAST of CSPI02G01340 vs. NCBI nr
Match: KAE8651522.1 (hypothetical protein Csa_023920, partial [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 2  ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAE 53
          ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAE
Sbjct: 1  ELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAE 51

[Close]

BLAST of CSPI02G01340 vs. NCBI nr
Match: KAA0061572.1 (hypothetical protein E6C27_scaffold41G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 5.5e-19
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAELR 55
          ++LGDLI NIMIVPTKKHGDATAEDI+SGFLLLDHPEASLSKTGFPAVS+AELR
Sbjct: 2  VDLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAELR 55

[Close]

BLAST of CSPI02G01340 vs. NCBI nr
Match: TYK10702.1 (hypothetical protein E5676_scaffold332G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 5.5e-19
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MELGDLISNIMIVPTKKHGDATAEDIKSGFLLLDHPEASLSKTGFPAVSDAELR 55
          ++LGDLI NIMIVPTKKHGDATAEDI+SGFLLLDHPEASLSKTGFPAVS+AELR
Sbjct: 2  VDLGDLIRNIMIVPTKKHGDATAEDIESGFLLLDHPEASLSKTGFPAVSEAELR 55

The following BLAST results are available for this feature:

BLAST of CSPI02G01340 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G01340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V070	2.7e-19	90.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CHF0	2.7e-19	90.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI02G01340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651522.1	1.1e-19	100.00	hypothetical protein Csa_023920, partial [Cucumis sativus]	[more]
KAA0061572.1	5.5e-19	90.74	hypothetical protein E6C27_scaffold41G001340 [Cucumis melo var. makuwa]	[more]
TYK10702.1	5.5e-19	90.74	hypothetical protein E5676_scaffold332G00110 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI02G01340 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G01340.1	CSPI02G01340.1	mRNA