CSPI02G00980 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G00980
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 638636 .. 642305 (-)
RNA-Seq Expression	CSPI02G00980
Synteny	CSPI02G00980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCCTAAAGCTTCAGCCATGGCGTCTTGAACAGAGAGAAACAGCCATGGAAATTTCGGCAATCTGCAACTGTGAGAAATGTTTTCATCCTTTTTTTTCTCTCTTTTTTCAGTTTTCTTTTTCTTTTTTTTCGCTCGGTCCCTCTCTTTTAGGCACGTGACCATTCTTTGTCCCGTTCCTCTTACTTTTCTTCGGATTTATTCTTTTCCAATTTTTTCCTTTACTAAAATAATTTTCGGAACTATATATATAATAACATGGTTTTCTAAACGGTCGGTTGTTGAATATATATATATATATTTAATTTTACAAATATACAGCGAGATCCGTAAGTCTATAAACGACTTAACGGTAGAAATCTATTATCATAATACACGACCATCTATCACTGAGAGAAGTCTATCACATGTATATTTTGTTATATTTACAATTTTATTTTAAATGTTGGTATATAAGAAGTTGCCACAAATTATAATTATCCCAAAAAAAGTGACGATTGAAATCAAGTGGGTTTTTTTTAGTATAGTTGCATCGGGTAATACTTTTAGGTATAATAAGTGTATAACAACTTTTATAAGAAATTGTAAACATAACAAAATCTATTAACGATAAACTATTACTATTGGTTATATGGTTAATCCCTTTAACAAAATCTATTTACACTCTATGACAAAACTAAGAGTAATGAGTGTTTGTACTAGGCTTTTGAGCGGTAAATAATTTGTCTTTTTTATTATTCTTGAAAAAACTCTAATATTACTCTTACTTTTAAATTGATAAAATATTTATACTTTATAAAAGGAACATTTTTAAATTTAGTATAATAAATTAAAATATTTACAAACTATCACAAAATTTTAGATTTTATCAACGATAGAAACTAATAATTTTTTATCACTATCTATGAATGTCACTTGGTAGAATCTGAAATTTTTTTATATGTTGTAAATATATGGTTAAATTTGTTATTTTTGTCGATTTTCCTTTATAAAAGAATCAAGTTTAATTAATTTTATTTTTAAGTAATTTTGTTATATTGAATGTAAATATTTTATCCATTTTTTCTATTTTGAAAAAAAAAAACCTCTATAATTTTCTTCATTTATTATCTCCATTTTATTAATTGTTTAAAAAAACAATTTTTAAGTTATTGTTTATATTTTAACGTTTGACAAACAATTCAACCATGGTTCTTAAAAATGATGCAAATTATTGTTTGAAATGGAGAGGAAATATGTTTCATTTTCAAACACAAAATGACATCCAATAAGGCTTTAAATAAGCATTCCGTTTTTAATTAAATTTACTAACATCTCTTCTATCTCTAAATCTTTTGCATAAATATCTTGTATTGATTTATATTTTAAAAATCGAGTCAAAATTTAAAATTTAAATTGTTTTTAAATTTTAGAATTTTTTTCCATTTTAAAATATATAAAAGAAATAGTCATTTATCCATAGTTTCATGATTGAAAGACATGAAACACTTTAGTAAAATCATAAATTTTCAATCATTATCAATAATTTATTAGGTCGCTATAAATGTGAAAAAAAGTTAGATATAAAATATCAATATAACAACATATATATTCTCTATTTTTAACTTGAATTTAAATTACTTACTCTAACAAAATAATTTAGTCATTTCTTCGTACTAGTTTTTGATTTATAAACTTATACAAATATTTAAAATAACTTTTTATTAGATTAGAATCTAATTTACGTATCTATTACCAAATAAATATTTAAAATCAAGAGACAGTATAGTTATACGTCTCTCTCGAGAAATTCAATAAAATTTGAACGATCTCTAAAAATAGAAACCTTTATATTCTTTTTTTTTTCTTTACAATATATGAACAAAACGACCTATTTAACATTTTACAATAGAAACAACAAGATATATGAGCAATGTTGGGTAAGACAACTCTAAAAGGTTGATTTGGTGCAATTTCATTGACTATAAAGTTTCTAATTAACCTCATTTTGTTAGAACTTGGGAAAAAAAGAATGTGATTACATTTATTGCAAGAAGTTGGTGCGCATAATTATTATATATGGGCATGTTACCTTTTTTCTTTTCTTTTTCCATATTCATATCACATTTATTTTAATCCTTAAAGTAGGTGACTTTTGGTGTTTAACACATTTTAGAATGATTTTAAAAGAGTTATTATATTTCACTTTTCATTAATTGATTGTCTGATAATGGAGTTTGAGTAACTATTTCGTTGTCAATGGGTGGTGCATATTCTTACAATATCTCTTTGGAAGCTAAAAGCTAAAATATATCACGTTTGTCAATACACAGAAAACTTGTTTCTAAGGATGATAAGGATAAAATTACCTTTCGCTTGTGAAAAGACTCGTTTAACCATGAGAATCTCCTGCTTGCATAATGATAGAAACTCAGCTCTCAGTACTAAATGCTCTCACTCATATTCATTGTTTGTCTTGCAAAAGTAGTCATGACAACTACTTGATGCTTGTGCTAAATGCTCCCACTTTGTCTCCCTGCATCTTTCTCGTTTGTCTTGTATATGGGAGAAATTGAGAGTCCGACATTGAAAAAATCAAGGAGACTCATACTCCATATAAGATAGATGAACTAGTTTGTAAAGTCATTGATATACTGTATTTGAAATTCCATGAGCAACTCCGGTAAAACATAAAAGAGAATGTGGAAAGGAAGATAAATGGGTAGAACGCGATATTAAAAAAATGACGAGAGAAGTTTTTGTACGAGGCACGACTAGGCGAGGAACAAACTAAATATTGGATTTAAAAAAGAATGAAAAAACCAGAGGAAAGAAAGAAGAAATATTGCATTCGAAATTAAAGTGATAATCCACCGTGACGTCGATATAAAAAAGGACCAAATTTCATTGATTTTCAAACTTGAGGTTAATTTTCATTAGGTAAATAGGTGAAATCCAATTTTCTCATTTAACTTAACAAAGTATAATTTCAATTTAAATTTTTATCTAATAAATTAATGCAACTAATTTTAAAACAGAGAGTTTGCAAAAATAGCAAAAAAAAAATTATGATAATAGAGTTAATTGTCACTTATATTCTCTAACTCGCAAAAATAACAAATTTAAAATCAAACTATAATTACTAGGCTTATTTATCAAATTTGCAATATATAAAAAGATGTGTTATCAAATTTGCAATATATAAAAAGATGTGTTATGAGTCGTTTTTTCAATTTTTTTTTCTTGTCATTGAATGCAATTTACGTTTTAGTATCATGAGCAGTAAATTTATATTTATAATCTTGAAATAATGAACTAAATTTATAGTTTCAAAATTTAGAATCAAATAGATATATAGTTTTAAATTGACCTAATAATTGTTGTAATATACACTTTTACCCTTACTTCCTATTAATATTGAGATAAACTAAAATTTATTTATAAGTCTTTTATTTTCCAGGGGAAGTTGGAGATAAACAAGGCCTCTCCTCTCATAATTTCATAAATATCACAAATCTGAGAGATCAACACTACTCTTCAATCCTCATTGTTCTTTTTACCCTTTACCAGTTTTCATCTGATCTCCGTTTCCCTTTACCTCACGACTTCTCGAAAAATAGTTTCCGTTTCGATTTTACTTCTCCGGCCACTCTCCCTCAAGGCGGCGCCGCTGCGCTGGCAATATAA

mRNA sequence

ATGGAAACCCTAAAGCTTCAGCCATGGCGTCTTGAACAGAGAGAAACAGCCATGGAAATTTCGGCAATCTGCAACTGGGAAGTTGGAGATAAACAAGGCCTCTCCTCTCATAATTTCATAAATATCACAAATCTGAGAGATCAACACTACTCTTCAATCCTCATTGTTCTTTTTACCCTTTACCAGTTTTCATCTGATCTCCGTTTCCCTTTACCTCACGACTTCTCGAAAAATAGTTTCCGTTTCGATTTTACTTCTCCGGCCACTCTCCCTCAAGGCGGCGCCGCTGCGCTGGCAATATAA

Coding sequence (CDS)

ATGGAAACCCTAAAGCTTCAGCCATGGCGTCTTGAACAGAGAGAAACAGCCATGGAAATTTCGGCAATCTGCAACTGGGAAGTTGGAGATAAACAAGGCCTCTCCTCTCATAATTTCATAAATATCACAAATCTGAGAGATCAACACTACTCTTCAATCCTCATTGTTCTTTTTACCCTTTACCAGTTTTCATCTGATCTCCGTTTCCCTTTACCTCACGACTTCTCGAAAAATAGTTTCCGTTTCGATTTTACTTCTCCGGCCACTCTCCCTCAAGGCGGCGCCGCTGCGCTGGCAATATAA

Protein sequence

METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTLYQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI*

Homology

[Close]

BLAST of CSPI02G00980 vs. ExPASy TrEMBL
Match: A0A0A0LIS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G002520 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.6e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60
           METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL
Sbjct: 1   METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60

Query: 61  YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI 101
           YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI
Sbjct: 61  YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI 100

[Close]

BLAST of CSPI02G00980 vs. NCBI nr
Match: KGN60597.1 (hypothetical protein Csa_019341 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 3.2e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60
           METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL
Sbjct: 1   METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60

Query: 61  YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI 101
           YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI
Sbjct: 61  YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI 100

The following BLAST results are available for this feature:

BLAST of CSPI02G00980 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G00980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIS3	1.6e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G002520 PE=4 SV=1	[more]

BLAST of CSPI02G00980 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60597.1	3.2e-49	100.00	hypothetical protein Csa_019341 [Cucumis sativus]	[more]

BLAST of CSPI02G00980 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G00980.1	CSPI02G00980.1	mRNA