CSPI02G00310 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G00310
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Pre-mRNA cleavage factor Im 25 kDa subunit
Location	Chr2: 193944 .. 196904 (+)
RNA-Seq Expression	CSPI02G00310
Synteny	CSPI02G00310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAGAGAGTAAGAGAGAGTAAGAGAGAGGTGAGAGTTCAGCATCGTTCTACCGATTGTATTCTCAAATTCCATCTCGTCTCTTCCCTTTTGCTTTCCCAGTGATCGTCTTGTCCGTCTCTTATTTTAGGCTTTAATTAGACTTTAGAATTTAGAAATTCCGCAGAGTGAGTGACGCCATTCCACTTTTTCGCTTCGTGTCCCTTCTCTCCATTCAACACGACATCTTAAATTCCTTCTCCTTCTTCTTCTTCTTCTTCCTGCTTCCTACTCCCACCTTACCTATATTCCTCTAAACTCCCTTTTCATTCTTCTTCTCATCTTCATTTCTCAATTCCCTCCATGGGTGACGACGGACGTCTGCATGCTATTGACGACGACGATGCTTCTTCCGCCCACCAGCTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTTGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAAGTATCCATTCTCACTGTATTCCGTTGACTATACTTTGCTCTTTAATACCTTCCTTCAATTTCTCTATTCTGTTTTTTTTTTTCTGCAGTTATGCTGCTCACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTCGTTCTTTCCTTACAATTATTTCATTTTATATACCTCAATCTTTAGTCTCCTAAGTCCTATTGATTGATTTCTTTAAGGATATAGAGTTTTTATTCTGCCTCTGCTGTTACCGTCCTCCATTTGCTTGACGCGTACTTAATCGGTGGAGTTCTGATTTTGTTGGCTTCTGTCAGTGTAGTTATAACTTCTACTGCAGTTTAAACAGCATCGACTTATTTGGCCTATTCTCCCGCTATTCTTAGATTCATAGATCACGATGCCTGATTACTAAGAGTAGCTGTTATGAAATCAACAAATAAAATTAAGAAGAAAAGTCCGAATGGTAGGAAACTGACACTAAAATTTACATGTTCACTAACAGTGTGTGAGTTTATTATTAGAGAATAATTCAGGATACAGATGGTTTCTAACTTTAGAGTTTACTTAGCGCACTTTTCTAACTTCTGTAGTAAATACAATTTAGGTTTCAACAATAATTAAATTCACAAGTTCTGTCTCCTGGCGGTATTGGCTTTTGTGGGATTGGTTCTTTATTTTTGTGGAATGAACATGATTTTTTGCATCCACACACATGATCTCCATACTTCATTTCCGTTTTGGGAGAAATCATTGTAGGTCGGCCTTTTCTATCCATAATACCTTTTAGGAGATAAGTTTTAGAATTATAAACCTCAATTCAGGACGCTTTTTTCTGCTATACAATTTCTAGATGTACATTTCATCTTGCGATCAGAAACAGTGCTTAGTATTCTGCATTATAATTGAAAGTGCCTGTTGTTCTCAAATTAGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCATAAGGCCCAATGAATCAGGTAAATTTGTTCTTTGGATCTCTTCTGCAGATGAGTTTGTCTGAGTTTAATAGTTATGCTGATATTTTATCATGGTTGATGATCTCAATTTACAGATATTGATGGCTTGACACGAAAGTTGACGAAGAAGCTTTCTGCCAACGGAGCCTCTGATGCATCTCATTGGGAGGTATTATAATGCCCAAATCCATTCCTTTAATTTCTGTACCATATTACTGCTGCGATTGTGAATGATGGAATTTGAAATTTTCTGCTTTTAACGTTTAGGTTAGTGAGTGCCTCGGTATGTGGTGGAGGCCTGACTTTGAGACCTTGCTCTTCCCGTATTTGTCCACTAATGTTAAAGGGGCCAAGGTAGTTATTTGAATGCGAATTACTTCCTTTAAACTACGACATGCATCATTTACCTTTAACTCACTTGCTCGCTCACTACCTGATGCAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCGGAGAGTAGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGGTATCTTAATCAAGTCACTTTGTGGAAGTCCAATATGTAACATTTGAAAATCTTACTTTTTGTTGAAAGAATGAAAGAAAAGGACACAAGTTCGATTGTTGTATAAAAATGTGGTGCATAATCTAACTACATGTAAATCCCGTCATCTTGCAGACATATGGACCAATTATATCGGGCATTCCGCAGCTTCTTTCCAAGTTCTCCTTCAACATCATCGGAACCTAAAAATCATCTTATTAATTATATAACAGACGAAGAACTATGGTCGGAGCAGTGAAAAAAAAAATTATTAGTCCATTATAGAGCTGTCAGCTAACTTTATATGAATGTTGACAGACCCTTGTATAAAACATATTATAAGTACATAAACATATATGTTGATGATTTTGTAAGTATAGAGATAAATACATAGTAGTAATATAGGTCCACATTGTCACTTTACAACTTGTGTGTTAAATGAGTGCTAAAAACTACATATGAGTGTGTAAATTGCTGCCAACTATCTTGACTTTCTTGAGGCAATGAACAGAGTTTTGATCATTCTCTCACTGGAGGATGCGGAGAAGTGATGAGGTATGTTAGAGGAAACTGTGTGCATATGTATGGATAGCGAAGGTTGCGTTTATGCGTTTATGCCGTGTCAAAAGTGGAAAATATATGTGTGTTATCCTTATCAGGACAGTATTTGTGGTACTGGAAGCGTCTTTGAAGCTTTATTATGTGTGGCACTCGACTTGCTTGTTTCTGCCAGTTGAGTTGAATATTCTTATTTTGCTTCATACTTTTCTACTTTGTTTTCTGCTACGTGGAAGCTTTGGATTTTTAAGGACAGTTGCACCGATTGAGTACATAACAGTATTAAGAATGAAATTTTCC

mRNA sequence

GTGAGAGAGTAAGAGAGAGTAAGAGAGAGGTGAGAGTTCAGCATCGTTCTACCGATTGTATTCTCAAATTCCATCTCGTCTCTTCCCTTTTGCTTTCCCAGTGATCGTCTTGTCCGTCTCTTATTTTAGGCTTTAATTAGACTTTAGAATTTAGAAATTCCGCAGAGTGAGTGACGCCATTCCACTTTTTCGCTTCGTGTCCCTTCTCTCCATTCAACACGACATCTTAAATTCCTTCTCCTTCTTCTTCTTCTTCTTCCTGCTTCCTACTCCCACCTTACCTATATTCCTCTAAACTCCCTTTTCATTCTTCTTCTCATCTTCATTTCTCAATTCCCTCCATGGGTGACGACGGACGTCTGCATGCTATTGACGACGACGATGCTTCTTCCGCCCACCAGCTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTTGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAATTATGCTGCTCACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCATAAGGCCCAATGAATCAGATATTGATGGCTTGACACGAAAGTTGACGAAGAAGCTTTCTGCCAACGGAGCCTCTGATGCATCTCATTGGGAGGTTAGTGAGTGCCTCGGTATGTGGTGGAGGCCTGACTTTGAGACCTTGCTCTTCCCGTATTTGTCCACTAATGTTAAAGGGGCCAAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCGGAGAGTAGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGACATATGGACCAATTATATCGGGCATTCCGCAGCTTCTTTCCAAGTTCTCCTTCAACATCATCGGAACCTAAAAATCATCTTATTAATTATATAACAGACGAAGAACTATGGTCGGAGCAGTGAAAAAAAAAATTATTAGTCCATTATAGAGCTGTCAGCTAACTTTATATGAATGTTGACAGACCCTTGTATAAAACATATTATAAGTACATAAACATATATGTTGATGATTTTGTAAGTATAGAGATAAATACATAGTAGTAATATAGGTCCACATTGTCACTTTACAACTTGTGTGTTAAATGAGTGCTAAAAACTACATATGAGTGTGTAAATTGCTGCCAACTATCTTGACTTTCTTGAGGCAATGAACAGAGTTTTGATCATTCTCTCACTGGAGGATGCGGAGAAGTGATGAGGTATGTTAGAGGAAACTGTGTGCATATGTATGGATAGCGAAGGTTGCGTTTATGCGTTTATGCCGTGTCAAAAGTGGAAAATATATGTGTGTTATCCTTATCAGGACAGTATTTGTGGTACTGGAAGCGTCTTTGAAGCTTTATTATGTGTGGCACTCGACTTGCTTGTTTCTGCCAGTTGAGTTGAATATTCTTATTTTGCTTCATACTTTTCTACTTTGTTTTCTGCTACGTGGAAGCTTTGGATTTTTAAGGACAGTTGCACCGATTGAGTACATAACAGTATTAAGAATGAAATTTTCC

Coding sequence (CDS)

ATGGGTGACGACGGACGTCTGCATGCTATTGACGACGACGATGCTTCTTCCGCCCACCAGCTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTTGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAATTATGCTGCTCACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCATAAGGCCCAATGAATCAGATATTGATGGCTTGACACGAAAGTTGACGAAGAAGCTTTCTGCCAACGGAGCCTCTGATGCATCTCATTGGGAGGTTAGTGAGTGCCTCGGTATGTGGTGGAGGCCTGACTTTGAGACCTTGCTCTTCCCGTATTTGTCCACTAATGTTAAAGGGGCCAAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCGGAGAGTAGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGACATATGGACCAATTATATCGGGCATTCCGCAGCTTCTTTCCAAGTTCTCCTTCAACATCATCGGAACCTAA

Protein sequence

MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT*

Homology

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BLAST of CSPI02G00310 vs. ExPASy Swiss-Prot
Match: Q94AF0 (Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CFIS1 PE=1 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.5e-81
Identity = 147/223 (65.92%), Postives = 178/223 (79.82%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDDASS--------AHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVL 60
           MG++ R  A+D ++ S          H L  +D+YPLS+YYFGSKE L  KDE +SDRV+
Sbjct: 1   MGEEAR--ALDMEEISDNTTRRNDVVHDL-MVDLYPLSSYYFGSKEALRVKDEIISDRVI 60

Query: 61  RMKSNYAAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKL 120
           R+KSNYAAHGLRTCVEAV+LVELFKHPH+LL Q RNSIFKLPGGR+RP ESDI+GL RKL
Sbjct: 61  RLKSNYAAHGLRTCVEAVLLVELFKHPHVLLLQYRNSIFKLPGGRLRPGESDIEGLKRKL 120

Query: 121 TKKLSANGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRK 180
             KLS N     S +EV EC+GMWWRP+FETL++P+L  N+K  KECTKLFLV+LP  ++
Sbjct: 121 ASKLSVNENVGVSGYEVGECIGMWWRPNFETLMYPFLPPNIKHPKECTKLFLVRLPVHQQ 180

Query: 181 FVVPKNLKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNII 216
           FVVPKN KL+AVPLCQ+HEN KTYGPI+S IP+LLSKFSFN++
Sbjct: 181 FVVPKNFKLLAVPLCQLHENEKTYGPIMSQIPKLLSKFSFNMM 220

[Close]

BLAST of CSPI02G00310 vs. ExPASy Swiss-Prot
Match: Q8GXS3 (Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CFIS2 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.6e-59
Identity = 102/194 (52.58%), Postives = 140/194 (72.16%), Query Frame = 0


Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLL 83
           ++ YPLSNY FG+KEP L KD +++DR+ RMK NY   G+RT VE ++LV+   HPH+LL
Sbjct: 7   VNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHILL 66

Query: 84  FQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDASHWEVSECLGMWWRPDFET 143
            QI N+  KLPGGR++P E++ DGL RKLT KL  N A+    W V EC+  WWRP+FET
Sbjct: 67  LQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFET 126

Query: 144 LLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIISGI 203
           +++PY   ++   KEC +L++V L E   F VPKNLKL+AVPL ++++N + YGP+IS I
Sbjct: 127 MMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186

Query: 204 PQLLSKFSFNIIGT 218
           PQ LS+F FN+I +
Sbjct: 187 PQQLSRFHFNMISS 200

[Close]

BLAST of CSPI02G00310 vs. ExPASy Swiss-Prot
Match: Q7T3C6 (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio OX=7955 GN=nudt21 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.6e-46
Identity = 87/191 (45.55%), Postives = 126/191 (65.97%), Query Frame = 0


Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLL 83
           I++YPL+NY FG+KEPL  KD +++ R  RM+  +   G+R  VE V++V   + PH+LL
Sbjct: 38  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLL 97

Query: 84  FQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDA--SHWEVSECLGMWWRPDF 143
            Q+  + FKLPGG + P E +++GL R +T+ L   G  D     W + +C+G WWRP+F
Sbjct: 98  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEIL---GRQDGVKQDWVIDDCIGNWWRPNF 157

Query: 144 ETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIIS 203
           E   +PY+  ++   KE  KLFLV+L E   F VPKN KL+A PL ++++N   YGPIIS
Sbjct: 158 EPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIIS 217

Query: 204 GIPQLLSKFSF 213
            +PQLLS+F+F
Sbjct: 218 SLPQLLSRFNF 225

[Close]

BLAST of CSPI02G00310 vs. ExPASy Swiss-Prot
Match: Q3ZCA2 (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.4e-46
Identity = 87/191 (45.55%), Postives = 126/191 (65.97%), Query Frame = 0


Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLL 83
           I++YPL+NY FG+KEPL  KD +++ R  RM+  +   G+R  VE V++V   + PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 84  FQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDA--SHWEVSECLGMWWRPDF 143
            Q+  + FKLPGG + P E +++GL R +T+ L   G  D     W + +C+G WWRP+F
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEIL---GRQDGVLQDWVIDDCIGNWWRPNF 156

Query: 144 ETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIIS 203
           E   +PY+  ++   KE  KLFLV+L E   F VPKN KL+A PL ++++N   YGPIIS
Sbjct: 157 EPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIIS 216

Query: 204 GIPQLLSKFSF 213
            +PQLLS+F+F
Sbjct: 217 SLPQLLSRFNF 224

[Close]

BLAST of CSPI02G00310 vs. ExPASy Swiss-Prot
Match: O43809 (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=9606 GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.4e-46
Identity = 87/191 (45.55%), Postives = 126/191 (65.97%), Query Frame = 0


Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLL 83
           I++YPL+NY FG+KEPL  KD +++ R  RM+  +   G+R  VE V++V   + PH+LL
Sbjct: 37  INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLL 96

Query: 84  FQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDA--SHWEVSECLGMWWRPDF 143
            Q+  + FKLPGG + P E +++GL R +T+ L   G  D     W + +C+G WWRP+F
Sbjct: 97  LQLGTTFFKLPGGELNPGEDEVEGLKRLMTEIL---GRQDGVLQDWVIDDCIGNWWRPNF 156

Query: 144 ETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIIS 203
           E   +PY+  ++   KE  KLFLV+L E   F VPKN KL+A PL ++++N   YGPIIS
Sbjct: 157 EPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGPIIS 216

Query: 204 GIPQLLSKFSF 213
            +PQLLS+F+F
Sbjct: 217 SLPQLLSRFNF 224

[Close]

BLAST of CSPI02G00310 vs. ExPASy TrEMBL
Match: A0A0A0LIM0 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis sativus OX=3659 GN=Csa_2G000310 PE=3 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 1.3e-122
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA
Sbjct: 1   MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60

Query: 61  HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG 120
           HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG
Sbjct: 61  HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG 120

Query: 121 ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
           ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK
Sbjct: 121 ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 218
           LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT
Sbjct: 181 LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 217

[Close]

BLAST of CSPI02G00310 vs. ExPASy TrEMBL
Match: A0A1S3C9Z9 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103498651 PE=3 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.4e-116
Identity = 207/219 (94.52%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 1   MGDDGRLHAI--DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60
           MGDDGRLHAI  DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDR+LRMKSNY
Sbjct: 1   MGDDGRLHAIDDDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRILRMKSNY 60

Query: 61  AAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSA 120
           AA+GLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGR+RPNESDIDGLTRKL+KKL A
Sbjct: 61  AAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSKKLCA 120

Query: 121 NGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKN 180
           NGASDAS WEV+ECLGMWWRPDFETLLFPYLSTNVKGAKEC KLFLVKLPES+KFVVPKN
Sbjct: 121 NGASDASDWEVNECLGMWWRPDFETLLFPYLSTNVKGAKECAKLFLVKLPESKKFVVPKN 180

Query: 181 LKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 218
           LKLIAVPLCQIHENHKTYGP+ISGIPQLLSKFSFNIIGT
Sbjct: 181 LKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIGT 219

[Close]

BLAST of CSPI02G00310 vs. ExPASy TrEMBL
Match: A0A5D3CI10 (CCT-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001090 PE=3 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 9.7e-105
Identity = 189/204 (92.65%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MGDDGRLHAI--DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60
           MGDDGRLHAI  DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY
Sbjct: 1   MGDDGRLHAIDDDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60

Query: 61  AAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSA 120
           AA+GLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGR+RPNESDIDGLTRKL+KKLSA
Sbjct: 61  AAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSKKLSA 120

Query: 121 NGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKN 180
           NGASDAS WEVSECLGMWWRPDFETLLFPYLSTNVKGAKEC KLFLVKLPES+KFVVPKN
Sbjct: 121 NGASDASDWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECAKLFLVKLPESKKFVVPKN 180

Query: 181 LKLIAVPLCQIHENHKTYGPIISG 203
           LKLIAVPLCQIHENHK++   ++G
Sbjct: 181 LKLIAVPLCQIHENHKSFDHSLTG 204

[Close]

BLAST of CSPI02G00310 vs. ExPASy TrEMBL
Match: A0A5A7V2I9 (CCT-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00400 PE=3 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 3.7e-104
Identity = 186/204 (91.18%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MGDDGRLHAI--DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60
           MGDDGRLHAI  DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDR+LRMKSNY
Sbjct: 1   MGDDGRLHAIDDDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRILRMKSNY 60

Query: 61  AAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSA 120
           AA+GLRTCVEAVML+ELFKHPHLLLFQIRNSIFKLPGGR+RPNESDIDGLTRKL+KKLSA
Sbjct: 61  AAYGLRTCVEAVMLIELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSKKLSA 120

Query: 121 NGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKN 180
           NGASDAS WEV+ECLGMWWRPDFETLLFPYLSTNVKGAKEC KLFLVKLPES+KFVVPKN
Sbjct: 121 NGASDASDWEVNECLGMWWRPDFETLLFPYLSTNVKGAKECAKLFLVKLPESKKFVVPKN 180

Query: 181 LKLIAVPLCQIHENHKTYGPIISG 203
           LKLIAVPLCQIHENHK++   ++G
Sbjct: 181 LKLIAVPLCQIHENHKSFDHSLTG 204

[Close]

BLAST of CSPI02G00310 vs. ExPASy TrEMBL
Match: A0A6J1DN47 (Pre-mRNA cleavage factor Im 25 kDa subunit OS=Momordica charantia OX=3673 GN=LOC111021937 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.4e-103
Identity = 180/215 (83.72%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGD+G LHA++DD+A++A Q   + IYPL NYYFGSKEPLLFK+ETL+DR+ RMKSNYAA
Sbjct: 1   MGDNGHLHAMEDDEAATAEQSRAVRIYPLGNYYFGSKEPLLFKNETLADRLHRMKSNYAA 60

Query: 61  HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG 120
           +GLRTCVEAV+LVELFKHPHLLL QIRNSIFKLPGGR+RPNESDIDGL RKL++KLSANG
Sbjct: 61  NGLRTCVEAVLLVELFKHPHLLLLQIRNSIFKLPGGRLRPNESDIDGLKRKLSRKLSANG 120

Query: 121 ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
            SDAS WEV ECLGMWWRPDFETLL+PYLS+NVKGAKECTKLFLVKLPESRKF+VPKNLK
Sbjct: 121 TSDASDWEVGECLGMWWRPDFETLLYPYLSSNVKGAKECTKLFLVKLPESRKFIVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNII 216
           LIAVPLCQ+HEN KTYGP+ISG+PQLLSKFSFNII
Sbjct: 181 LIAVPLCQLHENQKTYGPVISGVPQLLSKFSFNII 215

[Close]

BLAST of CSPI02G00310 vs. NCBI nr
Match: XP_004141062.1 (pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis sativus] >KGN60522.1 hypothetical protein Csa_019305 [Cucumis sativus])

HSP 1 Score: 448.7 bits (1153), Expect = 2.8e-122
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA
Sbjct: 1   MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60

Query: 61  HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG 120
           HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG
Sbjct: 61  HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG 120

Query: 121 ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
           ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK
Sbjct: 121 ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 218
           LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT
Sbjct: 181 LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 217

[Close]

BLAST of CSPI02G00310 vs. NCBI nr
Match: XP_008459551.1 (PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis melo])

HSP 1 Score: 428.7 bits (1101), Expect = 3.0e-116
Identity = 207/219 (94.52%), Postives = 214/219 (97.72%), Query Frame = 0


Query: 1   MGDDGRLHAI--DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60
           MGDDGRLHAI  DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDR+LRMKSNY
Sbjct: 1   MGDDGRLHAIDDDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRILRMKSNY 60

Query: 61  AAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSA 120
           AA+GLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGR+RPNESDIDGLTRKL+KKL A
Sbjct: 61  AAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSKKLCA 120

Query: 121 NGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKN 180
           NGASDAS WEV+ECLGMWWRPDFETLLFPYLSTNVKGAKEC KLFLVKLPES+KFVVPKN
Sbjct: 121 NGASDASDWEVNECLGMWWRPDFETLLFPYLSTNVKGAKECAKLFLVKLPESKKFVVPKN 180

Query: 181 LKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 218
           LKLIAVPLCQIHENHKTYGP+ISGIPQLLSKFSFNIIGT
Sbjct: 181 LKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIGT 219

[Close]

BLAST of CSPI02G00310 vs. NCBI nr
Match: XP_038889512.1 (pre-mRNA cleavage factor Im 25 kDa subunit 1 [Benincasa hispida])

HSP 1 Score: 398.7 bits (1023), Expect = 3.3e-107
Identity = 191/217 (88.02%), Postives = 205/217 (94.47%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA 60
           MGDDGRLHA+DDD+AS+A Q   I IYPLSNYYF SKEPLLFKDET +DR+LRMKSNYAA
Sbjct: 1   MGDDGRLHAMDDDEASAADQRPSIHIYPLSNYYFESKEPLLFKDETFADRLLRMKSNYAA 60

Query: 61  HGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANG 120
           +GLRT VEAV+LVELFKHPHLLLFQIRNSIFKLPGGR+RPNESD+DGLTRKL++KLSANG
Sbjct: 61  YGLRTSVEAVLLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDVDGLTRKLSRKLSANG 120

Query: 121 ASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLK 180
           ASDAS WEV ECLGMWWRPDFETLLFPYLS+ VKGAKECTKLFLVKLPESRKFVVPKNLK
Sbjct: 121 ASDASDWEVGECLGMWWRPDFETLLFPYLSSTVKGAKECTKLFLVKLPESRKFVVPKNLK 180

Query: 181 LIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNIIGT 218
           LIAVPLCQIHENHKTYGP+ISGIPQLLSKFSF+II T
Sbjct: 181 LIAVPLCQIHENHKTYGPVISGIPQLLSKFSFDIIET 217

[Close]

BLAST of CSPI02G00310 vs. NCBI nr
Match: TYK10794.1 (T-complex protein 1 subunit beta [Cucumis melo var. makuwa])

HSP 1 Score: 389.4 bits (999), Expect = 2.0e-104
Identity = 189/204 (92.65%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MGDDGRLHAI--DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60
           MGDDGRLHAI  DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY
Sbjct: 1   MGDDGRLHAIDDDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60

Query: 61  AAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSA 120
           AA+GLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGR+RPNESDIDGLTRKL+KKLSA
Sbjct: 61  AAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSKKLSA 120

Query: 121 NGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKN 180
           NGASDAS WEVSECLGMWWRPDFETLLFPYLSTNVKGAKEC KLFLVKLPES+KFVVPKN
Sbjct: 121 NGASDASDWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECAKLFLVKLPESKKFVVPKN 180

Query: 181 LKLIAVPLCQIHENHKTYGPIISG 203
           LKLIAVPLCQIHENHK++   ++G
Sbjct: 181 LKLIAVPLCQIHENHKSFDHSLTG 204

[Close]

BLAST of CSPI02G00310 vs. NCBI nr
Match: KAA0061480.1 (T-complex protein 1 subunit beta [Cucumis melo var. makuwa])

HSP 1 Score: 387.5 bits (994), Expect = 7.6e-104
Identity = 186/204 (91.18%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MGDDGRLHAI--DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNY 60
           MGDDGRLHAI  DDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDR+LRMKSNY
Sbjct: 1   MGDDGRLHAIDDDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRILRMKSNY 60

Query: 61  AAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSA 120
           AA+GLRTCVEAVML+ELFKHPHLLLFQIRNSIFKLPGGR+RPNESDIDGLTRKL+KKLSA
Sbjct: 61  AAYGLRTCVEAVMLIELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSKKLSA 120

Query: 121 NGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKN 180
           NGASDAS WEV+ECLGMWWRPDFETLLFPYLSTNVKGAKEC KLFLVKLPES+KFVVPKN
Sbjct: 121 NGASDASDWEVNECLGMWWRPDFETLLFPYLSTNVKGAKECAKLFLVKLPESKKFVVPKN 180

Query: 181 LKLIAVPLCQIHENHKTYGPIISG 203
           LKLIAVPLCQIHENHK++   ++G
Sbjct: 181 LKLIAVPLCQIHENHKSFDHSLTG 204

[Close]

BLAST of CSPI02G00310 vs. TAIR 10
Match: AT4G29820.1 (homolog of CFIM-25 )

HSP 1 Score: 303.1 bits (775), Expect = 1.8e-82
Identity = 147/223 (65.92%), Postives = 178/223 (79.82%), Query Frame = 0


Query: 1   MGDDGRLHAIDDDDASS--------AHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVL 60
           MG++ R  A+D ++ S          H L  +D+YPLS+YYFGSKE L  KDE +SDRV+
Sbjct: 1   MGEEAR--ALDMEEISDNTTRRNDVVHDL-MVDLYPLSSYYFGSKEALRVKDEIISDRVI 60

Query: 61  RMKSNYAAHGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKL 120
           R+KSNYAAHGLRTCVEAV+LVELFKHPH+LL Q RNSIFKLPGGR+RP ESDI+GL RKL
Sbjct: 61  RLKSNYAAHGLRTCVEAVLLVELFKHPHVLLLQYRNSIFKLPGGRLRPGESDIEGLKRKL 120

Query: 121 TKKLSANGASDASHWEVSECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRK 180
             KLS N     S +EV EC+GMWWRP+FETL++P+L  N+K  KECTKLFLV+LP  ++
Sbjct: 121 ASKLSVNENVGVSGYEVGECIGMWWRPNFETLMYPFLPPNIKHPKECTKLFLVRLPVHQQ 180

Query: 181 FVVPKNLKLIAVPLCQIHENHKTYGPIISGIPQLLSKFSFNII 216
           FVVPKN KL+AVPLCQ+HEN KTYGPI+S IP+LLSKFSFN++
Sbjct: 181 FVVPKNFKLLAVPLCQLHENEKTYGPIMSQIPKLLSKFSFNMM 220

[Close]

BLAST of CSPI02G00310 vs. TAIR 10
Match: AT4G25550.1 (Cleavage/polyadenylation specificity factor, 25kDa subunit )

HSP 1 Score: 230.7 bits (587), Expect = 1.1e-60
Identity = 102/194 (52.58%), Postives = 140/194 (72.16%), Query Frame = 0


Query: 24  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEAVMLVELFKHPHLLL 83
           ++ YPLSNY FG+KEP L KD +++DR+ RMK NY   G+RT VE ++LV+   HPH+LL
Sbjct: 7   VNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHILL 66

Query: 84  FQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDASHWEVSECLGMWWRPDFET 143
            QI N+  KLPGGR++P E++ DGL RKLT KL  N A+    W V EC+  WWRP+FET
Sbjct: 67  LQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFET 126

Query: 144 LLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPIISGI 203
           +++PY   ++   KEC +L++V L E   F VPKNLKL+AVPL ++++N + YGP+IS I
Sbjct: 127 MMYPYCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVISTI 186

Query: 204 PQLLSKFSFNIIGT 218
           PQ LS+F FN+I +
Sbjct: 187 PQQLSRFHFNMISS 200

The following BLAST results are available for this feature:

BLAST of CSPI02G00310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94AF0	2.5e-81	65.92	Pre-mRNA cleavage factor Im 25 kDa subunit 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8GXS3	1.6e-59	52.58	Pre-mRNA cleavage factor Im 25 kDa subunit 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q7T3C6	2.6e-46	45.55	Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio OX=7955...	[more]
Q3ZCA2	3.4e-46	45.55	Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus OX=9913 ...	[more]
O43809	3.4e-46	45.55	Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens OX=960...	[more]

BLAST of CSPI02G00310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIM0	1.3e-122	100.00	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis sativus OX=3659 GN=Csa_2G0...	[more]
A0A1S3C9Z9	1.4e-116	94.52	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Cucumis melo OX=3656 GN=LOC1034986...	[more]
A0A5D3CI10	9.7e-105	92.65	CCT-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001090 PE=3...	[more]
A0A5A7V2I9	3.7e-104	91.18	CCT-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00400 PE=3 S...	[more]
A0A6J1DN47	2.4e-103	83.72	Pre-mRNA cleavage factor Im 25 kDa subunit OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of CSPI02G00310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141062.1	2.8e-122	100.00	pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis sativus] >KGN60522.1 hypot...	[more]
XP_008459551.1	3.0e-116	94.52	PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis melo]	[more]
XP_038889512.1	3.3e-107	88.02	pre-mRNA cleavage factor Im 25 kDa subunit 1 [Benincasa hispida]	[more]
TYK10794.1	2.0e-104	92.65	T-complex protein 1 subunit beta [Cucumis melo var. makuwa]	[more]
KAA0061480.1	7.6e-104	91.18	T-complex protein 1 subunit beta [Cucumis melo var. makuwa]	[more]

BLAST of CSPI02G00310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29820.1	1.8e-82	65.92	homolog of CFIM-25	[more]
AT4G25550.1	1.1e-60	52.58	Cleavage/polyadenylation specificity factor, 25kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PIRSF	PIRSF017888	CPSF-25	coord: 4..217 e-value: 3.7E-79 score: 263.0
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PFAM	PF13869	NUDIX_2	coord: 24..210 e-value: 9.6E-71 score: 237.2
IPR016706	Cleavage/polyadenylation specificity factor subunit 5	PANTHER	PTHR13047	PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT	coord: 11..215
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 22..214 e-value: 3.3E-74 score: 250.4
None	No IPR available	PANTHER	PTHR13047:SF1	PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 1	coord: 11..215
IPR015797	NUDIX hydrolase-like domain superfamily	SUPERFAMILY	55811	Nudix	coord: 61..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G00310.1	CSPI02G00310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
biological_process	GO:0006457	protein folding
cellular_component	GO:0005832	chaperonin-containing T-complex
cellular_component	GO:0005849	mRNA cleavage factor complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0051082	unfolded protein binding