CSPI02G00300 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G00300
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ribosomal protein L18ae family
Location	Chr2: 186659 .. 188774 (-)
RNA-Seq Expression	CSPI02G00300
Synteny	CSPI02G00300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTCGGGGAACTGTCCCTTCATTTGTGGATGATGACAAGACGGCGATTGTATCCACGATCTAGCTTTCTTTTGGTTACTACTGGGTTTGGAGTTTCGGATTTTTGGCAGCTGAAGAAGTCACTAATTCTATTCTTTTCCCTTTCTGCTGAGAATTATCCACTTATCTTTTATTCTTGACTTTGGCGTGGGAATATGACTACGATTCATGAAGTCTAGTTTTGGTCAAGCTAGGTTACCTATTCATCTGACGGCTTTTGGAAGATTGAAAAGTTCCATAAGGTCGTTGTGCTCAACTGAACTAGTGTTTTATTAACATGAGGTTTAATGAACTAATTGGTATACGAATATTGGATTGTTTAGAGGTATTTGGAATGTAAATACCAAACTTAGGTAAATTTTCAATCCAGTTTCAATCTTCTGTTTGCCGCATTTGAAGAATATATAGCTATCTTGTTGGGTGTCTTTCCTTCAGACTTCTGAGTAGATTTTGATCTTTGACACAGGTTTACAAAGTGGATACTGCGAATTCGAAGAGTTCATCCTTCCATAAACACCGGCTTCAGCATGGATCCAAGTAACTTAATTCTTCTTATAACTTGGGTTGCTCATGATATCACTTACGGTTGGGGGCATAACCTAAAATTTAAAAAGAAGAAAAGCATGACTATGTATATTGGGTGCATTAGATGATTTTATTTGTGAGTTTGTAGCATGGTTCTTACTTAAGTAATTTATTTGATCTTGAGATTCTTTAGGTGTCTTGGACATCCATACATGCCTATACTCATTTTTTATGCTTTCACTGCATGGTTATACTTTTTATTGAAGAATCTGGCCACATTCAGAGTTTTAAGCTTGTTGATTTAGTGTCCGTCCTTTTATGATACACATTTGCGGTCTTTGTCAAACCAATAATACACATTGAACTGTAAATAGTTTTTACGAAATAGTTGGAACGATTACTTGAGTTGTGAACATGTTTTGGCGATGTTACAGATGGAAAAATGGACCAGACGGTGCAACTGGTGAAATCGGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGGTAAGTCGGGAATAAAAAGAGAAACATTTATGATATATGATGCATATATTATTACCTTGTATTGGTGGCTCTTTAATGAAATTATTTTTCGTAAAAAAAAAAAAAGGAATGAAATTAGTTGAACCATTTTTAAAATGCCTTTATATTATAAAGGACGCATTGCCACGCCACATTCCTGTGGAATTTCTGAAATCGATAGGGGTTTCGTTTTTTATTGCTCCATTATGAGGGAAGGTTGAGATGATATTTAATAGCGTCATTTTCTTTGCTACTCGACGGTGTATGGTCTTGATGGTAGGGGTTTATCACTCCGGTAGTCCATTTTCTTTGTACTTACCTATGAATTACAGAAATCTCTTAAGATTTTCATGTCGTTTTCAATTGGAGATGTTGATTACGAGTGTCTTTTGCTTGTATATTCATCTATGCTCAAAATGGTTGATAATACACCTAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAATACACACTTCTCAGAGATGTAGAGGATGCTCAGGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGCGGAATAGGATGGTTTTCGTGAGTATTATGAAACTCTCTCGTGTACTTACATTTCATGGAACGTCTATCTTTGCCTACGTCCAGTTTTTCGAGTTTCCTAATCTTACCTTTGTATCTGTCTTTCCATTCAGTTTCCTCCTGGGGTTTTTTTTCCCATTGCTGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGGGAACGAGCTGGATTAGCTGCGTCTGCCATTGCTGTAAGTGACTCCTCCGTTTCTCCCAGTCCCTACCCATAATAAAGAAAGGAAAGAAGAAGAAACAAACATAATTCTTACATCTTCGCCACTTATTATGAGTTCGTTGAATATGATTGAGTTTTCTGAAGAAGCAAAAAATGTTGAAATGTTGCAGGCACTTGCATGTTCGATCCTCTTGTTAATCGTGGTAGCTGTTCTTCTATGA

mRNA sequence

ATGGATATTCGGGGAACTGTCCCTTCATTTGTGGATGATGACAAGACGGCGATTTCTAGTTTTGGTCAAGCTAGGTTACCTATTCATCTGACGGCTTTTGGAAGATTGAAAAGTTCCATAAGGTTTACAAAGTGGATACTGCGAATTCGAAGAGTTCATCCTTCCATAAACACCGGCTTCAGCATGGATCCAAATGGAAAAATGGACCAGACGGTGCAACTGGTGAAATCGGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAATACACACTTCTCAGAGATGTAGAGGATGCTCAGGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGCGGAATAGGATGGTTTTCTTTCCTCCTGGGGTTTTTTTTCCCATTGCTGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGGGAACGAGCTGGATTAGCTGCGTCTGCCATTGCTGCACTTGCATGTTCGATCCTCTTGTTAATCGTGGTAGCTGTTCTTCTATGA

Coding sequence (CDS)

ATGGATATTCGGGGAACTGTCCCTTCATTTGTGGATGATGACAAGACGGCGATTTCTAGTTTTGGTCAAGCTAGGTTACCTATTCATCTGACGGCTTTTGGAAGATTGAAAAGTTCCATAAGGTTTACAAAGTGGATACTGCGAATTCGAAGAGTTCATCCTTCCATAAACACCGGCTTCAGCATGGATCCAAATGGAAAAATGGACCAGACGGTGCAACTGGTGAAATCGGTCTCTGATAAGCATCTTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCAATATTCAAAGGCCAAGGAAAAGATGCTCCAGACCACATAAGGAGCAAATACACACTTCTCAGAGATGTAGAGGATGCTCAGGTAGGGCTATATGACAAGCCTCTCCCGTGTTTTGGCTGCGGAATAGGATGGTTTTCTTTCCTCCTGGGGTTTTTTTTCCCATTGCTGTGGTACTATGCCACGATTCTCTACTTCTGGAATGCTCGCAGAGATCCAAGGGAACGAGCTGGATTAGCTGCGTCTGCCATTGCTGCACTTGCATGTTCGATCCTCTTGTTAATCGTGGTAGCTGTTCTTCTATGA

Protein sequence

MDIRGTVPSFVDDDKTAISSFGQARLPIHLTAFGRLKSSIRFTKWILRIRRVHPSINTGFSMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL*

Homology

[Close]

BLAST of CSPI02G00300 vs. ExPASy TrEMBL
Match: A0A0A0LKM2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000300 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.6e-103
Identity = 192/194 (98.97%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MDIRGTVPSFVDDDKTAISSFGQARLPIHLTAFGRLKSSIRFTKWILRIRRVHPSINTGF 60
           MDIRGTVPSFVDDDKTAISSFGQARLPIHLTAFGRLKSSIRFTKWILRI RVH SINTGF
Sbjct: 1   MDIRGTVPSFVDDDKTAISSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGF 60

Query: 61  SMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDA 120
           SMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDA
Sbjct: 61  SMDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDA 120

Query: 121 QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAAL 180
           QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAAL
Sbjct: 121 QVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAAL 180

Query: 181 ACSILLLIVVAVLL 195
           ACSILLLIVVAVLL
Sbjct: 181 ACSILLLIVVAVLL 194

[Close]

BLAST of CSPI02G00300 vs. ExPASy TrEMBL
Match: A0A1S3CAZ9 (uncharacterized protein LOC103498658 OS=Cucumis melo OX=3656 GN=LOC103498658 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 130/133 (97.74%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 121
           MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED+Q
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARRDPRERAGLAASAIAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 182 CSILLLIVVAVLL 195
           CSI+LLIVVAVLL
Sbjct: 121 CSIILLIVVAVLL 133

[Close]

BLAST of CSPI02G00300 vs. ExPASy TrEMBL
Match: A0A5D3CGZ6 (60S ribosomal protein L18a-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001100 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 130/133 (97.74%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 121
           MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED+Q
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARRDPRERAGLAASAIAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 182 CSILLLIVVAVLL 195
           CSI+LLIVVAVLL
Sbjct: 121 CSIILLIVVAVLL 133

[Close]

BLAST of CSPI02G00300 vs. ExPASy TrEMBL
Match: A0A6J1G4J6 (uncharacterized protein LOC111450686 OS=Cucurbita moschata OX=3662 GN=LOC111450686 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 7.0e-62
Identity = 118/133 (88.72%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 121
           MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+Q
Sbjct: 1   MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGF FP++WYYATILYFWN+RRDPRERAGLAAS+IAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWNSRRDPRERAGLAASSIAALA 120

Query: 182 CSILLLIVVAVLL 195
           CS++LL+VVAV L
Sbjct: 121 CSVILLVVVAVRL 133

[Close]

BLAST of CSPI02G00300 vs. ExPASy TrEMBL
Match: A0A6J1KAT7 (uncharacterized protein LOC111493795 OS=Cucurbita maxima OX=3661 GN=LOC111493795 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 2.0e-61
Identity = 117/133 (87.97%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 121
           MDPN K+D TVQLVKSVSD+HLDLLRP+ARICSIFKGQGKDA DHIRSKYTLLRDVED+Q
Sbjct: 1   MDPNAKIDPTVQLVKSVSDRHLDLLRPTARICSIFKGQGKDASDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGF FP++WYYATILYFWN+RRDPRERAGLAAS+IAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWNSRRDPRERAGLAASSIAALA 120

Query: 182 CSILLLIVVAVLL 195
           CS++LL+VVAV L
Sbjct: 121 CSVILLVVVAVHL 133

[Close]

BLAST of CSPI02G00300 vs. NCBI nr
Match: XP_011648592.1 (uncharacterized protein LOC101207093 isoform X1 [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 2.1e-92
Identity = 174/176 (98.86%), Postives = 174/176 (98.86%), Query Frame = 0


Query: 19  SSFGQARLPIHLTAFGRLKSSIRFTKWILRIRRVHPSINTGFSMDPNGKMDQTVQLVKSV 78
           SSFGQARLPIHLTAFGRLKSSIRFTKWILRI RVH SINTGFSMDPNGKMDQTVQLVKSV
Sbjct: 3   SSFGQARLPIHLTAFGRLKSSIRFTKWILRILRVHSSINTGFSMDPNGKMDQTVQLVKSV 62

Query: 79  SDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGW 138
           SDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGW
Sbjct: 63  SDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGW 122

Query: 139 FSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL 195
           FSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL
Sbjct: 123 FSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALACSILLLIVVAVLL 178

[Close]

BLAST of CSPI02G00300 vs. NCBI nr
Match: XP_004141063.1 (uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus] >KGN60545.2 hypothetical protein Csa_019181 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 3.5e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 121
           MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 182 CSILLLIVVAVLL 195
           CSILLLIVVAVLL
Sbjct: 121 CSILLLIVVAVLL 133

[Close]

BLAST of CSPI02G00300 vs. NCBI nr
Match: XP_008459564.1 (PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo] >XP_008459572.1 PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo] >KAA0061479.1 60S ribosomal protein L18a-1 [Cucumis melo var. makuwa] >TYK10795.1 60S ribosomal protein L18a-1 [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-67
Identity = 130/133 (97.74%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 121
           MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVED+Q
Sbjct: 1   MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARRDPRERAGLAASAIAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 182 CSILLLIVVAVLL 195
           CSI+LLIVVAVLL
Sbjct: 121 CSIILLIVVAVLL 133

[Close]

BLAST of CSPI02G00300 vs. NCBI nr
Match: XP_038889607.1 (uncharacterized protein LOC120079478 [Benincasa hispida])

HSP 1 Score: 261.2 bits (666), Expect = 7.4e-66
Identity = 127/133 (95.49%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 121
           MDPNGK+DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+Q
Sbjct: 1   MDPNGKIDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGFFFPL+WYYATILYFWNARRDPRERAGLAASAIAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFFFPLMWYYATILYFWNARRDPRERAGLAASAIAALA 120

Query: 182 CSILLLIVVAVLL 195
           CSI+LL+VVAVLL
Sbjct: 121 CSIILLVVVAVLL 133

[Close]

BLAST of CSPI02G00300 vs. NCBI nr
Match: XP_022946692.1 (uncharacterized protein LOC111450686 [Cucurbita moschata] >XP_022946693.1 uncharacterized protein LOC111450686 [Cucurbita moschata])

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-61
Identity = 118/133 (88.72%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 62  MDPNGKMDQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQ 121
           MDPN K+D TVQLVKSVSD+HLDLLRPSARICSIFKGQGKDA DHIRSKYTLLRDVED+Q
Sbjct: 1   MDPNAKIDPTVQLVKSVSDRHLDLLRPSARICSIFKGQGKDASDHIRSKYTLLRDVEDSQ 60

Query: 122 VGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWNARRDPRERAGLAASAIAALA 181
           VGLYDKPLPCFGCGIGWFSFLLGF FP++WYYATILYFWN+RRDPRERAGLAAS+IAALA
Sbjct: 61  VGLYDKPLPCFGCGIGWFSFLLGFLFPVMWYYATILYFWNSRRDPRERAGLAASSIAALA 120

Query: 182 CSILLLIVVAVLL 195
           CS++LL+VVAV L
Sbjct: 121 CSVILLVVVAVRL 133

[Close]

BLAST of CSPI02G00300 vs. TAIR 10
Match: AT4G26060.1 (Ribosomal protein L18ae family )

HSP 1 Score: 149.1 bits (375), Expect = 3.8e-36
Identity = 76/123 (61.79%), Postives = 95/123 (77.24%), Query Frame = 0


Query: 69  DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVEDAQVGLYDKP 128
           D + +LVKSV+DKH  L+RP A+  S      KDA    + +YTL++DV++ + G+YDKP
Sbjct: 10  DGSAELVKSVADKHAGLVRPVAKYYSAV----KDAMVCGKGRYTLVKDVDEVENGVYDKP 69

Query: 129 LPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAIAALACSILLL 188
           LPCFGCGIGWFSFLLGF FP LWYYAT+LYF N  R+DPRERAGLAASAI A+  S+LLL
Sbjct: 70  LPCFGCGIGWFSFLLGFVFPFLWYYATLLYFGNYYRKDPRERAGLAASAITAMGFSLLLL 128

Query: 189 IVV 191
           ++V
Sbjct: 130 VIV 128

[Close]

BLAST of CSPI02G00300 vs. TAIR 10
Match: AT5G57060.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 141.4 bits (355), Expect = 7.9e-34
Identity = 73/134 (54.48%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 62  MDPNGKM---DQTVQLVKSVSDKHLDLLRPSARICSIFKGQGKDAPDHIRSKYTLLRDVE 121
           MD N K    +   +LVK ++D+H  L++ ++R  S      KDA    + +YTL++DV+
Sbjct: 1   MDENSKFVSGNGRTELVKFIADRHAKLMKQASRHYSAI----KDAMARGKKRYTLVKDVD 60

Query: 122 DAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRDPRERAGLAASAI 181
           D + G YDKPLPCFGCGIGWFSFLLGF FP LWYYA  LYF N  R+DPRERAGLAASAI
Sbjct: 61  DMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFGNYYRKDPRERAGLAASAI 120

Query: 182 AALACSILLLIVVA 192
            A+  S++LL++ A
Sbjct: 121 TAMGFSLVLLVIFA 130

[Close]

BLAST of CSPI02G00300 vs. TAIR 10
Match: AT5G57060.2 (BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-29
Identity = 61/92 (66.30%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 101 KDAPDHIRSKYTLLRDVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFW 160
           KDA    + +YTL++DV+D + G YDKPLPCFGCGIGWFSFLLGF FP LWYYA  LYF 
Sbjct: 12  KDAMARGKKRYTLVKDVDDMETGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFG 71

Query: 161 N-ARRDPRERAGLAASAIAALACSILLLIVVA 192
           N  R+DPRERAGLAASAI A+  S++LL++ A
Sbjct: 72  NYYRKDPRERAGLAASAITAMGFSLVLLVIFA 103

[Close]

BLAST of CSPI02G00300 vs. TAIR 10
Match: AT1G54217.2 (Ribosomal protein L18ae family )

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-22
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 102 DAPDHIRSKYTLLR-DVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFW 161
           D  +  + KY L+R D ED+++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  
Sbjct: 5   DLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLI 64

Query: 162 N-ARRDPRERAGLAASAIAALACSILLLIVVAVLL 195
           +   RDPRER+GLAASAIAAL  S+ L+I V VL+
Sbjct: 65  SYYHRDPRERSGLAASAIAALIFSVALVITVLVLV 99

[Close]

BLAST of CSPI02G00300 vs. TAIR 10
Match: AT1G54217.1 (Ribosomal protein L18ae family )

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-22
Identity = 56/89 (62.92%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 108 RSKYTLLR-DVEDAQVGLYDKPLPCFGCGIGWFSFLLGFFFPLLWYYATILYFWN-ARRD 167
           + KY L+R D ED+++G + KPLPCFG GIGWFSFLLGF FP  WY AT LY  +   RD
Sbjct: 10  KGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLYLISYYHRD 69

Query: 168 PRERAGLAASAIAALACSILLLIVVAVLL 195
           PRER+GLAASAIAAL  S+ L+I V VL+
Sbjct: 70  PRERSGLAASAIAALIFSVALVITVLVLV 98

The following BLAST results are available for this feature:

BLAST of CSPI02G00300 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G00300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKM2	1.6e-103	98.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000300 PE=4 SV=1	[more]
A0A1S3CAZ9	1.1e-67	97.74	uncharacterized protein LOC103498658 OS=Cucumis melo OX=3656 GN=LOC103498658 PE=...	[more]
A0A5D3CGZ6	1.1e-67	97.74	60S ribosomal protein L18a-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1G4J6	7.0e-62	88.72	uncharacterized protein LOC111450686 OS=Cucurbita moschata OX=3662 GN=LOC1114506...	[more]
A0A6J1KAT7	2.0e-61	87.97	uncharacterized protein LOC111493795 OS=Cucurbita maxima OX=3661 GN=LOC111493795...	[more]

BLAST of CSPI02G00300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648592.1	2.1e-92	98.86	uncharacterized protein LOC101207093 isoform X1 [Cucumis sativus]	[more]
XP_004141063.1	3.5e-68	100.00	uncharacterized protein LOC101207093 isoform X2 [Cucumis sativus] >KGN60545.2 hy...	[more]
XP_008459564.1	2.3e-67	97.74	PREDICTED: uncharacterized protein LOC103498658 [Cucumis melo] >XP_008459572.1 P...	[more]
XP_038889607.1	7.4e-66	95.49	uncharacterized protein LOC120079478 [Benincasa hispida]	[more]
XP_022946692.1	1.4e-61	88.72	uncharacterized protein LOC111450686 [Cucurbita moschata] >XP_022946693.1 unchar...	[more]

BLAST of CSPI02G00300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26060.1	3.8e-36	61.79	Ribosomal protein L18ae family	[more]
AT5G57060.1	7.9e-34	54.48	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-...	[more]
AT5G57060.2	1.2e-29	66.30	BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR...	[more]
AT1G54217.2	1.1e-22	60.00	Ribosomal protein L18ae family	[more]
AT1G54217.1	3.1e-22	62.92	Ribosomal protein L18ae family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46666	60S RIBOSOMAL L18A-LIKE PROTEIN	coord: 66..191
None	No IPR available	PANTHER	PTHR46666:SF6	BNAC08G12080D PROTEIN	coord: 66..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G00300.1	CSPI02G00300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane