CSPI01G32350 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G32350
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	U11/U12 small nuclear ribonucleoprotein 48 kDa protein
Location	Chr1: 27148428 .. 27149415 (-)
RNA-Seq Expression	CSPI01G32350
Synteny	CSPI01G32350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATCTCACTATTCAGGTAGGCAACTTTTGGAATCAGACTAATCCATTCTTAACTATTTTAGGGTTTCGGAGTATAATTATATCTCTCAAAGAGCTTGTGAAGAGCGCAAGAGATGTTGCAACTATAGACCTATAATTGAGCATGATGGACACCCAAAGCAGCAGTCTTATAATGAGGTAGTTCTGAGCTCTTTACTATTTTTGTTATTAATCTAGCAGTTGTTAATTTTTTCTGTTCATTTATTAATGATTTTAAATCTCATGAATTCTTCGGATTGACTGCTCTGAAATTGGGATACCATTGGAATAGAACATAAAAATTTGTGGATTCTCTAATTCCAATAGGAGCTTATGAGATGGCTGTTTTGTCATTCTTTTCCTGCATTTTGTGCACCTCCTTAGTCCTTGCATATTATTTTATATAAAAAAGAATAAACCTCCTGTAGCAATAAATGATGAAGCAGCAGCAGCTGGTAGACTGCTTAATGTTCAGTGGCCCATGATGTTTCCTGTCTGTTTGTTTATAAAAAGCAGGATGCAAACAAGACGAAAACAAGGGAGGAATTGTTGGCTGAAGAAAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAGGCAAAGCGATCAACTTACAGGTATCAGCTTGTTAGATTTATCTCTTGTAAGATGATTCTTATTCATATGTTTCCAACATTGCTTTTGTTATCTCTCTATTCTGTAACAGTTATCGGCATAGGGTCTAACTATGGCATGACAATTCCTTTTCTTATGATCTTTTATGGAAAAATGTGAGATTACATATGTTTTCTAGCTTCTGCATCAACTTTTGCCACCAGAAGTTTTTATGTTAGATGATATCCTCACTCAAGTTTTTGCTAATTTTACTTTCCGTGGAAGGTTACAAGAGATATTATTGAGGAATACATGGAGGAGATTATGAAAGCTGGAGGAATTGGACGCTTTTGTGAAGGGACCTGA

mRNA sequence

ATGAGGATCTCACTATTCAGGGTTTCGGAGTATAATTATATCTCTCAAAGAGCTTGTGAAGAGCGCAAGAGATGTTGCAACTATAGACCTATAATTGAGCATGATGGACACCCAAAGCAGCAGTCTTATAATGAGGATGCAAACAAGACGAAAACAAGGGAGGAATTGTTGGCTGAAGAAAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAGGCAAAGCGATCAACTTACAGGTATCAGCTTGTTACAAGAGATATTATTGAGGAATACATGGAGGAGATTATGAAAGCTGGAGGAATTGGACGCTTTTGTGAAGGGACCTGA

Coding sequence (CDS)

ATGAGGATCTCACTATTCAGGGTTTCGGAGTATAATTATATCTCTCAAAGAGCTTGTGAAGAGCGCAAGAGATGTTGCAACTATAGACCTATAATTGAGCATGATGGACACCCAAAGCAGCAGTCTTATAATGAGGATGCAAACAAGACGAAAACAAGGGAGGAATTGTTGGCTGAAGAAAGGGATTATAAACGTCGAAGAATGTCATACCGTGGAAAGAAGGCAAAGCGATCAACTTACAGGTATCAGCTTGTTACAAGAGATATTATTGAGGAATACATGGAGGAGATTATGAAAGCTGGAGGAATTGGACGCTTTTGTGAAGGGACCTGA

Protein sequence

MRISLFRVSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRRRMSYRGKKAKRSTYRYQLVTRDIIEEYMEEIMKAGGIGRFCEGT*

Homology

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BLAST of CSPI01G32350 vs. ExPASy Swiss-Prot
Match: Q9M8X2 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP48 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-27
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 7   RVSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRR 66
           R +E  +++ +A EER R C+YRPII+HDG P+Q+S N+D +K KTREELLAEERDYKRR
Sbjct: 459 RAAELGFMTAKADEERNRRCSYRPIIDHDGRPRQRSLNQDMDKMKTREELLAEERDYKRR 518

Query: 67  RMSYRGKKAKRSTYRYQLVTRDIIEEYMEEIMKAGGIGRFCEG 110
           RMSYRGKK KR+    + V  D+IEEY EEI  AGGIG F +G
Sbjct: 519 RMSYRGKKVKRTP---RQVLHDMIEEYTEEIKLAGGIGCFEKG 558

[Close]

BLAST of CSPI01G32350 vs. ExPASy TrEMBL
Match: A0A5D3BCH1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00550 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 93/103 (90.29%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 7   RVSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRR 66
           RVSEYNYISQRACEERKR CNYRPIIEHDG PKQQSYNEDANKTKTREELLAEERDYKRR
Sbjct: 452 RVSEYNYISQRACEERKRRCNYRPIIEHDGLPKQQSYNEDANKTKTREELLAEERDYKRR 511

Query: 67  RMSYRGKKAKRSTYRYQLVTRDIIEEYMEEIMKAGGIGRFCEG 110
           RMSYRGKKAKRST +   VTRDIIEEYMEEIMKAGGIG F +G
Sbjct: 512 RMSYRGKKAKRSTLQ---VTRDIIEEYMEEIMKAGGIGCFVKG 551

[Close]

BLAST of CSPI01G32350 vs. ExPASy TrEMBL
Match: A0A5A7T4I0 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G002790 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 93/103 (90.29%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 7   RVSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRR 66
           RVSEYNYISQRACEERKR CNYRPIIEHDG PKQQSYNEDANKTKTREELLAEERDYKRR
Sbjct: 452 RVSEYNYISQRACEERKRRCNYRPIIEHDGLPKQQSYNEDANKTKTREELLAEERDYKRR 511

Query: 67  RMSYRGKKAKRSTYRYQLVTRDIIEEYMEEIMKAGGIGRFCEG 110
           RMSYRGKKAKRST +   VTRDIIEEYMEEIMKAGGIG F +G
Sbjct: 512 RMSYRGKKAKRSTLQ---VTRDIIEEYMEEIMKAGGIGCFVKG 551

[Close]

BLAST of CSPI01G32350 vs. ExPASy TrEMBL
Match: A0A1S3B9I2 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Cucumis melo OX=3656 GN=LOC103487266 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 93/103 (90.29%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 7   RVSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRR 66
           RVSEYNYISQRACEERKR CNYRPIIEHDG PKQQSYNEDANKTKTREELLAEERDYKRR
Sbjct: 452 RVSEYNYISQRACEERKRRCNYRPIIEHDGLPKQQSYNEDANKTKTREELLAEERDYKRR 511

Query: 67  RMSYRGKKAKRSTYRYQLVTRDIIEEYMEEIMKAGGIGRFCEG 110
           RMSYRGKKAKRST +   VTRDIIEEYMEEIMKAGGIG F +G
Sbjct: 512 RMSYRGKKAKRSTLQ---VTRDIIEEYMEEIMKAGGIGCFVKG 551

[Close]

BLAST of CSPI01G32350 vs. ExPASy TrEMBL
Match: A0A0A0LY27 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G657490 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.3e-41
Identity = 94/121 (77.69%), Postives = 102/121 (84.30%), Query Frame = 0


Query: 1   MRISLFRVSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEE 60
           MRISLFRVSEYNYISQRACEERKRCCNYRPIIEHDG PK+QS+NEDANKTKTREELLAEE
Sbjct: 1   MRISLFRVSEYNYISQRACEERKRCCNYRPIIEHDGLPKKQSHNEDANKTKTREELLAEE 60

Query: 61  RDYKRRRMSYRGKKAKRST------YRYQLVTRDI------IEEYMEEIMKAGGIGRFCE 110
           RDYKRRRMSYRGKKAKRST       ++ L+   +      IEEY+EEIMKAGGIGRF +
Sbjct: 61  RDYKRRRMSYRGKKAKRSTLQVISSLKFLLILLSVEGYKRYIEEYVEEIMKAGGIGRFVK 120

[Close]

BLAST of CSPI01G32350 vs. ExPASy TrEMBL
Match: A0A6J1EI02 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111434345 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.0e-38
Identity = 86/103 (83.50%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 8   VSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRRR 67
           VSE+NYISQRACEERKR CNYRPIIEHDG PKQQS++ED +KTKT+EELLAEERDYKRRR
Sbjct: 477 VSEHNYISQRACEERKRRCNYRPIIEHDGLPKQQSHDEDRDKTKTKEELLAEERDYKRRR 536

Query: 68  MSYRGKKAKRSTYRYQLVTRDIIEEYMEEIMKAGGIGRFCEGT 111
           MSYRGKKAKRST +   VTRDIIEEYM+EIMKAGGIG F +GT
Sbjct: 537 MSYRGKKAKRSTLQ---VTRDIIEEYMDEIMKAGGIGYFVKGT 576

[Close]

BLAST of CSPI01G32350 vs. NCBI nr
Match: KAA0038392.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 3.6e-41
Identity = 93/103 (90.29%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 7   RVSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRR 66
           RVSEYNYISQRACEERKR CNYRPIIEHDG PKQQSYNEDANKTKTREELLAEERDYKRR
Sbjct: 452 RVSEYNYISQRACEERKRRCNYRPIIEHDGLPKQQSYNEDANKTKTREELLAEERDYKRR 511

Query: 67  RMSYRGKKAKRSTYRYQLVTRDIIEEYMEEIMKAGGIGRFCEG 110
           RMSYRGKKAKRST +   VTRDIIEEYMEEIMKAGGIG F +G
Sbjct: 512 RMSYRGKKAKRSTLQ---VTRDIIEEYMEEIMKAGGIGCFVKG 551

[Close]

BLAST of CSPI01G32350 vs. NCBI nr
Match: TYJ97003.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 3.6e-41
Identity = 93/103 (90.29%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 7   RVSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRR 66
           RVSEYNYISQRACEERKR CNYRPIIEHDG PKQQSYNEDANKTKTREELLAEERDYKRR
Sbjct: 452 RVSEYNYISQRACEERKRRCNYRPIIEHDGLPKQQSYNEDANKTKTREELLAEERDYKRR 511

Query: 67  RMSYRGKKAKRSTYRYQLVTRDIIEEYMEEIMKAGGIGRFCEG 110
           RMSYRGKKAKRST +   VTRDIIEEYMEEIMKAGGIG F +G
Sbjct: 512 RMSYRGKKAKRSTLQ---VTRDIIEEYMEEIMKAGGIGCFVKG 551

[Close]

BLAST of CSPI01G32350 vs. NCBI nr
Match: XP_008443753.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucumis melo])

HSP 1 Score: 178.3 bits (451), Expect = 3.6e-41
Identity = 93/103 (90.29%), Postives = 95/103 (92.23%), Query Frame = 0


Query: 7   RVSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRR 66
           RVSEYNYISQRACEERKR CNYRPIIEHDG PKQQSYNEDANKTKTREELLAEERDYKRR
Sbjct: 452 RVSEYNYISQRACEERKRRCNYRPIIEHDGLPKQQSYNEDANKTKTREELLAEERDYKRR 511

Query: 67  RMSYRGKKAKRSTYRYQLVTRDIIEEYMEEIMKAGGIGRFCEG 110
           RMSYRGKKAKRST +   VTRDIIEEYMEEIMKAGGIG F +G
Sbjct: 512 RMSYRGKKAKRSTLQ---VTRDIIEEYMEEIMKAGGIGCFVKG 551

[Close]

BLAST of CSPI01G32350 vs. NCBI nr
Match: XP_031743015.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X2 [Cucumis sativus] >KAE8653591.1 hypothetical protein Csa_007460 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 7   RVSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRR 66
           RVSEYN I QRACEERKR CNYRPIIEHDG PKQQS+NEDANKTKTREELLAEERDYKRR
Sbjct: 448 RVSEYNDIFQRACEERKRRCNYRPIIEHDGLPKQQSHNEDANKTKTREELLAEERDYKRR 507

Query: 67  RMSYRGKKAKRSTYRYQLVTRDIIEEYMEEIMKAGGIGRFCEG 110
           RMSYRGKKAKRST +   VTRDIIEEYMEEIMKAGGIGRF +G
Sbjct: 508 RMSYRGKKAKRSTLQ---VTRDIIEEYMEEIMKAGGIGRFVKG 547

[Close]

BLAST of CSPI01G32350 vs. NCBI nr
Match: XP_038879303.1 (U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Benincasa hispida] >XP_038879304.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Benincasa hispida] >XP_038879305.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Benincasa hispida] >XP_038879306.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Benincasa hispida] >XP_038879307.1 U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 2.0e-39
Identity = 90/103 (87.38%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 7   RVSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRR 66
           RVSEYNYISQRACEERKR CNYRPIIEHDG PKQQ +NED NKTKTREELLAEERDYKRR
Sbjct: 456 RVSEYNYISQRACEERKRRCNYRPIIEHDGLPKQQFHNEDTNKTKTREELLAEERDYKRR 515

Query: 67  RMSYRGKKAKRSTYRYQLVTRDIIEEYMEEIMKAGGIGRFCEG 110
           RMSYRGKKAKRST +   VTRDIIEEYMEEIMKAGGIG F +G
Sbjct: 516 RMSYRGKKAKRSTLQ---VTRDIIEEYMEEIMKAGGIGCFVKG 555

[Close]

BLAST of CSPI01G32350 vs. TAIR 10
Match: AT3G04160.1 (unknown protein; Has 1711 Blast hits to 1353 proteins in 195 species: Archae - 0; Bacteria - 64; Metazoa - 693; Fungi - 201; Plants - 207; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink). )

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-28
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 7   RVSEYNYISQRACEERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRR 66
           R +E  +++ +A EER R C+YRPII+HDG P+Q+S N+D +K KTREELLAEERDYKRR
Sbjct: 459 RAAELGFMTAKADEERNRRCSYRPIIDHDGRPRQRSLNQDMDKMKTREELLAEERDYKRR 518

Query: 67  RMSYRGKKAKRSTYRYQLVTRDIIEEYMEEIMKAGGIGRFCEG 110
           RMSYRGKK KR+    + V  D+IEEY EEI  AGGIG F +G
Sbjct: 519 RMSYRGKKVKRTP---RQVLHDMIEEYTEEIKLAGGIGCFEKG 558

[Close]

BLAST of CSPI01G32350 vs. TAIR 10
Match: AT3G04160.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage. )

HSP 1 Score: 114.0 bits (284), Expect = 7.7e-26
Identity = 60/89 (67.42%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 21  ERKRCCNYRPIIEHDGHPKQQSYNEDANKTKTREELLAEERDYKRRRMSYRGKKAKRSTY 80
           ER R C+YRPII+HDG P+Q+S N+D +K KTREELLAEERDYKRRRMSYRGKK KR+  
Sbjct: 475 ERNRRCSYRPIIDHDGRPRQRSLNQDMDKMKTREELLAEERDYKRRRMSYRGKKVKRTP- 534

Query: 81  RYQLVTRDIIEEYMEEIMKAGGIGRFCEG 110
             + V  D+IEEY EEI  AGGIG F +G
Sbjct: 535 --RQVLHDMIEEYTEEIKLAGGIGCFEKG 560

The following BLAST results are available for this feature:

BLAST of CSPI01G32350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M8X2	3.1e-27	62.14	U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Arabidopsis thaliana O...	[more]

BLAST of CSPI01G32350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCH1	1.7e-41	90.29	U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Cucumis melo var. maku...	[more]
A0A5A7T4I0	1.7e-41	90.29	U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Cucumis melo var. maku...	[more]
A0A1S3B9I2	1.7e-41	90.29	U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Cucumis melo OX=3656 G...	[more]
A0A0A0LY27	2.3e-41	77.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G657490 PE=4 SV=1	[more]
A0A6J1EI02	4.0e-38	83.50	U11/U12 small nuclear ribonucleoprotein 48 kDa protein OS=Cucurbita moschata OX=...	[more]

BLAST of CSPI01G32350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038392.1	3.6e-41	90.29	U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucumis melo var. makuwa...	[more]
TYJ97003.1	3.6e-41	90.29	U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucumis melo var. makuwa...	[more]
XP_008443753.1	3.6e-41	90.29	PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Cucumis melo]	[more]
XP_031743015.1	1.2e-39	88.35	U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X2 [Cucumis sativ...	[more]
XP_038879303.1	2.0e-39	87.38	U11/U12 small nuclear ribonucleoprotein 48 kDa protein [Benincasa hispida] >XP_0...	[more]

BLAST of CSPI01G32350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04160.1	2.2e-28	62.14	unknown protein; Has 1711 Blast hits to 1353 proteins in 195 species: Archae - 0...	[more]
AT3G04160.2	7.7e-26	67.42	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..58
None	No IPR available	PANTHER	PTHR21402	UNCHARACTERIZED	coord: 7..109
IPR032845	U11/U12 small nuclear ribonucleoprotein 48kDa protein	PANTHER	PTHR21402:SF10	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 48 KDA PROTEIN	coord: 7..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G32350.1	CSPI01G32350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding