CSPI01G30660 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G30660
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr1: 25173926 .. 25174292 (+)
RNA-Seq ExpressionCSPI01G30660
SyntenyCSPI01G30660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTAAAAGAGGAGGAGAGGGACGAAGAAGACGAAGAAGACGAAGAAGAAGACGAAGAAGACGAAGAAGAAGACGAAGAAGAAGACCAAGTGAAGGAAAGGCAAAAAAAAAGAAAAGGAATGGTAAATGGAAAAATGGGTTAGTGGGTATAGTAAAGAAGCAAAAAGGCAAGAGAAAATGGAAGAAAAATCCAAAAGGGAAAAAGGTGTCGGTACTTGAAAAGCGTTGGGTGGGTTTCCTCTGTTTTGATCATAAGTTTGTGAATTGAATTGAATTGAATTCTGTAAGTTGTGTTGTGGTTGTGGGTGAGATGACTACGTTCTCGACAAAGCGTGGTGGTATGATGGTTTTGTCCTCATTTGA

mRNA sequence

ATGAAGTTAAAAGAGGAGGAGAGGGACGAAGAAGACGAAGAAGACGAAGAAGAAGACGAAGAAGACGAAGAAGAAGACGAAGAAGAAGACCAAGTGAAGGAAAGGCAAAAAAAAAGAAAAGGAATGGTAAATGGAAAAATGGATGACTACGTTCTCGACAAAGCGTGGTGGTATGATGGTTTTGTCCTCATTTGA

Coding sequence (CDS)

ATGAAGTTAAAAGAGGAGGAGAGGGACGAAGAAGACGAAGAAGACGAAGAAGAAGACGAAGAAGACGAAGAAGAAGACGAAGAAGAAGACCAAGTGAAGGAAAGGCAAAAAAAAAGAAAAGGAATGGTAAATGGAAAAATGGATGACTACGTTCTCGACAAAGCGTGGTGGTATGATGGTTTTGTCCTCATTTGA

Protein sequence

MKLKEEERDEEDEEDEEEDEEDEEEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWYDGFVLI*
Homology
[Close]
BLAST of CSPI01G30660 vs. ExPASy TrEMBL
Match: A0A0A0M2V7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616340 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.9e-17
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0 

Query: 1  MKLKEEERDEEDEEDEEEDEED--EEEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWY 60
          MKLKEEERDEEDEEDEEEDEE+  EEEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWY
Sbjct: 1  MKLKEEERDEEDEEDEEEDEEEESEEEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWY 60

Query: 61 DGFVLI 65
          DGFVLI
Sbjct: 61 DGFVLI 66

[Close]
BLAST of CSPI01G30660 vs. NCBI nr
Match: KAE8653522.1 (hypothetical protein Csa_023633, partial [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 3.6e-09
Identity = 45/58 (77.59%), Postives = 54/58 (93.10%), Query Frame = 0 

Query: 7  ERDEEDEEDEEEDEEDEEEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWYDGFVLI 65
          ++ ++ ++  +++EEDEEEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWYDGFVLI
Sbjct: 7  KKTKKTKKKTKDEEEDEEEDEEEDQVKERQKKRKGMVNGKMDDYVLDKAWWYDGFVLI 64

The following BLAST results are available for this feature:
BLAST of CSPI01G30660 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI01G30660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M2V73.9e-1795.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616340 PE=4 SV=1[more]
BLAST of CSPI01G30660 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653522.13.6e-0977.59hypothetical protein Csa_023633, partial [Cucumis sativus][more]
BLAST of CSPI01G30660 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G30660.1CSPI01G30660.1mRNA