CSPI01G28330 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G28330
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	THO complex subunit 6
Location	Chr1: 23040315 .. 23048155 (-)
RNA-Seq Expression	CSPI01G28330
Synteny	CSPI01G28330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGGGACGCAACGAATTGGGACGAAGCTGCCTACAGAGAGAGTATATATAAAGAAAGAGAGATTCAAACTCGTACTGTGTTCAGAACTGCATGGGCGCCTTCTTTAAATGGCTGCCCTGAGACCATTGTGGCTGCATCCAGTGATGGATCCGTTGCCTCTTACTCTATCGCTTCTTGCATCTCTAAGCTCGTAAGATTCTTGATTCTTGATATTGATAGTCATTTTGTTGTTTGATTTGCCTATGATTTTCGGGCGCTTCTTTGGTTAGACTAGTGAAGGGCCAATACCATGTTTACAACCAAAATTCTTTCTTAACCGATCCATTTTTTACTCACTCACATTGAATCCTCAGAACTTAACTCTTGGCAAATTTTATATTCAATCTGCAAACAAACTCAAATATCGGTAAATTGTTTGTGATCTAGACAAACAGATGAAATGCGAACTGGATAAGACACATGTTGGAACGATTTGACCTCTAGGTTTCCCATTTATGATAATGAGTATTAATACTTGATATGAAAGAATTGGATTATTTTACGATCATATTTAGTGCTACCATTTCAAAGTTTTATCATGGGTTGCAGAATACTTGCCACTTCTTACGATGATTGATTCAAACAATATGTGGTTGCAGAAGAAAAAAGTTTATTTTGTGTATTTGGTGTTCAGTGCCTGTATCCCTCTAGAGTTCCTCTTTGCTCTTCATTAGTAGTTTCGGACTAGTTGTGCGTCTTACGAACTCTTATCCTGATTATACCTATTTTTCATGCCTGTTTCAGCAATTTGGTTATGGAAATACTAAAAGGCAAGTCCATTTATCTCTTGTTTTAAGTTATTTCTAAATTTCCGACTGCAAACTTGTAATAATGTTTCACTATGTGCCTTCCTTTAGTTTGTTAGCAGCAGAGCCTAATTGCTTCCTTCAAGGGCACGATGGGCCCACGTATGATGTCAAATTTTACGATAATGGTGACAATACTCTATTACTGAGGTTCCTCTCTCTCTCAATACTATAAATAGTGTGGTCACTTTCTTTTTATTCTTTCATTTCTTGGAAATTTCATTCTAGTTCTAAATTGAGTATTGTAATTGTATTTGTCATCTCATCCCAATGACCTCAACGCTGATTCTAAAGCTAATTTGAACGTATATGTATGTTTATTATGGCTATTTCTTTGGATGGTGAGATGAATCCATAAACATAGTTGTTGGATATCCATTATTTCAACTTCCAAAGGGTGATCTCGTAGTTTTTTTAAATTAATTGACTTGTACTTATTTGAGCTTCAAAACTGCCTAAATGCTTTGATTGTTTATTGAATTTATAGTTATTGAAGAATAAAGATATACCTACAGATTGTAAAATTGAGTTAAACGGCAAGATGGAATGGGATAAAAACTTGGGCTTGTTCTTATCTTCTTGATTGAAATATCTGATTGATTGTGCACAACATTTTAGCTGTGGGGATGATGGTCACATTCGAGGATGGAGGTGGAGAGATTGTACAGATATAAAAGTGCCCATTTCTTTTCAAGGTAATCCGTAATAGTTTATATATTTGTTATCTGTAGGAGTATCACAGGTTATCGGTAGGAGTATCACAGGGGCAGTCTTTTCGTCTGCTTTTTTTTACCATTTTCTTGTTCTGTTCTCACTCATTTAAGGTTCTTGACTAGGTGTATTGTTTCAATTTTCAACTGTTATAATTTCATTCCTTTCTTGTTACTCCAGGTAGTCATATTGAGCCTGTAATGGACCTGATCAATCCTCAATTCAAGTAGGCTATTGACAAATATTTTGTGTTTTTCTTTACTTATTTTTCGTTGGCATTCTAATTCAGCCTGTAGATAACCTGGTGGATTCTGGAAATGATTTGGTTGTTAAAAGATATATAATTCTATCATTGGCATTTATTAGATTTAGATTTGTATTCTGTTTGGTACCTGTTTTTTAGCTTTGGTCCATTTTGGTTCTCATACTTTTGAAAAGTGGTCACTTTTTTAAAGTGCAAAAGCGAAAATGGACGTTTTGAAAATACATAGACTAAAATGAACAAAAGTTGTAAGTATATAAACTGAAATGAACATTTTGAAAGCCAAGAGACCAAAATGACCAAAGGCTACAAGTACAAGTTCCTAACTTATATTTAAACCTAAAATTTAATATTTTCTGAATAATATTATACAAAAAGGAAAATCACTGGTTTTATATTTCGTACTACTTTCTTCTAATTTATAAGAAACAGACCCTAATACTTGAAATATCTATCTGGAACTTTCCATGTTGAACATCAATCCCAACTTTCAAGTATTGTCTTTTTGACACCTTAATCAGATGTTTATTGGTTTATCTAATCATCTATATCTATTAATACAGCAGCTGCTCTTGGAAAATGTTCAACATATAAGCAAGGATGCTTTTATTTTTTTCCTTGGATAGATTTGTCTAACATAGCTTTGTATTTGTCTAATTTCTGATTTATAACTAAGCTGAAGATAAAATAGATATGAATTTTTTCCCTTAGTGCATGTGATTATCTCTTCAATGCCCTCTTATTTTTTCATGTATCTTATTGCTGTCTTCTAGAGGTCCTTGGGGTGCTCTTTCTCCAATCCCTGAAAATAATGCAATTGCTACTGATGCCCAGGTTAATAATTTTGATATTTCCCTCTCTTATTCTATAACTTGTAAGCAGACTTTCACATGATTTTTGACGTTGCGAGTATGATTCTATTATATAGAATTTTTCTTTATTAATAATGTTGATTACATCCACAAATAGATCTTTATTGTTATCAAGATTAATTAATCATTATCTTTGGTGTACTCTTAATAATTTAATTAAAATACTACTTAATTATATATATATACACATAGTAAGGTTTAGATTAGGATCGCTCCTTATCCACACACAAAATGAAAAGAGTAGAAGAAAAAGAACAGATGAGGTGATATCTTATTTTATTTGTATTTTACAGAGTGGATCCATTTTCTCTGCTGCTGGAGATTCTTGTGCGTATTGTTGGGATTTGGTACGTGTATTTTAAGGTGGATGGTGTAACCGTAAAAGTTCCTGTTCATATTTTCTTTGCAGCCAAAGAATTAACTTCCTCTTAGCTCTAACTGAGTTTCTAGCTTTTTGCGTTTTCAATTTCCAGGAGAGCGGTAAAGTTAAGTTGGTGTTTAAGGGGCACTCTGACTACTTGCACTGTATTGTTGCGCGAAACACTGTCAATCAAGTACAGTCTTTCCTTCTTTTGCTTCTTTGTACTGTAGATTTTGATCTTCAGTTCTACATTAACCCTCTTTTGTATTTTGTATAGACTAGCATAGTTTGTTCTTTTGTCTTGATTGTGGTCATCCTCCTGGCAGGTTGACTAGTAATGAATTGGAAGAAAATGTTATTTCAAGGAAGTATACTGGCACAGATAAAAGAACATTAGGCGTAGATGGATAGGATAGTTGAGATGAAGGTCTTGAAGTTGTAGGACAGTTGAGTAAACAAGTGAAGCATCAAAGGGATCTGGATGAAAACTGGAATCTTAAGAGAGTTCCTACTCCCCCAGAAATTGACTTCTCTGGCTAAAATTTTTCCTTGTTTTGCCTTTGGCTACCTCTCTTCTTTATTTTCAACTTTATCTCCACACAACACTGTCCTTCACAACCCCCCCGAGTCTAAGTAATCTGTCTCACTAAATGTTTGCGCTCTTATTAACTTCTAATTTCATCCTCGGTTGTCTCACTTATTGCCTCCAGACTTGATTGTCTGTTGATGTAAATTAATGAATCAGGAGCCTATTTCTGTGCCTGCTACTCTTCTATTTGAATTATAGTTTAGGTATGCAAGTAGTAGAGTGTTGCCATTTTCCTATACATCTATGGAAAGCATGAAATTCTTGAGATCTGCTTCAAGTTCTTCTTTTCCTCCTTCATGATCAATAGTTTCATGTTCTGTCATCAAGCTCTAAGTTTCTAACACTATGTCAATTAAATTCACTTCTGAAAGTATAGATACTTTATAATTATTGTTGGTCCACTTTCAAAATCAATTATTATGTCTTCACTTGTTATAGTTTTTCTTTCAGTTTTATGTTTCAAAACATGTAATAATCACTAGATTCTGAACGGTACTTTTCATGTATATTCACACTATTTGTTTCACACCTTGAATTCCAGATCATAACTGGTTCAGAAGATGGTACAGCACGAATATGGGGTAGGGAACTATGTATTTATATATATTTATCAATCTGAGAAGGCTTAACCATTTTGTTTCTGCACTTGTATCATGCGTATTAAAAATTCCCTTTAACGACCATAAATTTGTTGAGAGAACATAATTTAGCATGGTGGTTAGGACTTCTAAAAAGGAACACGGGTTTGAATTCTCTTTCGTTATCGGTCTTCAATCAATTGCAATCTTTACTTTATTAGCTGGTAAATTTGGGTTGGGAGAATTTTGGGAATATGTAAATTGTTTGATAGTATGAGGTTCCATCTCAAAATTAATAGGCAACGAGAGGAGTAGCTCATCTATATGATATGGAGGTGAGTCTCCTTGGTTTTTTCAATGTAGGACTTTTAATATCTCCAACATGTCTTCTCAAGATGGTGCCTCTTTGGGTTCACCTATCTCGGACCGAATACCCGTTTGGGTTTAATGGGCTGTAGTACCATGTTTGATAGTATGAGGTTTCATCTGAAAACCAACTGGCAATGAGAGGAGTAGTCCATCTATATTATATGGAGTGTGAGTTTCTTTGGTTTTTCCAACATGGGACTGTTAACATCTCCAACATAAACTATTAGAGCTTTTTTTGTATCTTATACATTTTTATCTATCAAACCAAACCAGATTGCAAGAGTGGAAAGTGCATTCAACTAATTGACCCTGCTAAGGATAAGAAGTTGAAAGGGCATTTCTCATTTGTTAGATGCATTGCTCTTGATGCAAGTGAAAGCTGGTTGGTAAGTACTTAAGATCAGGAAATTCTCCCTTTTTTCTTTGTATTGTCTAATATCAGTAATTTGTGTTTACAGCTACAGATTTGGGTACGAGTTTTCTGTGCAGTTGTCTTATTTTGTTGTTTTCCATTTATTGAAAAAGAAAGAAGAGAAAACACAAGGTATACGTAGAAAGCCTTAGTACCTTAGTACAGGAAGAAAAATCGCCTCCACGATAGAAGCCTTTCTTATTATTTTCTAATAATCAAAAGAATAGAAGAGGGGAAAATATATAAAGACCACAATAAGCCTTTACAAATAAGGAAATAAAACTAGGGTATAATTAATTATAAAAATACCCTTGCAGCTATAAACACACAACTAGCCCCTTATTTCCAACACCATTCTTCCTTATTCTTTATGGAAGTTATTTTTTCCCCTGAAGGAAAATATTTTGATAATGGCTTTATATTACTTCATCATTCTTCGGCTTCTTGGTGGATATCTTGCCATGCAAAATTATTTTGCAATTAGTCTTTTGGGGGCATTTGGGACAAGGAGAGTAACAGCTAATTACAAGTGGCATACAATAATAATTTTATCCTTTCTCCAGCTATCCTAGAACAGGAAGGATAGTTGACTTGATCTTAGCCTTTTGTTTCTTATCCTCCCGTTGTTTTTACATTCAAGGAAAAACAAAACTTTCTATTTGAAATGCAGGCATAGAAACACTCCCTACTTTTTCCGAATGGAATTGTCTTCTAGATGGCTTGAAGTAGATTTCAACTGGCAAGTTGCAACCCACATGCCTTCTGTAAGTCAGTCTTCAATTACTATGCCTTAGAAACTCCAAGAACACAAAAAACACGAGCACTCAAAGATAGACATATTACAATATATCAATAGCCTTTCGAGAGGGCTTTCTTTCCCAAATTTCCACCCTGGAAATTCTTTCAATTCTTTCAACCTTGTTCCCAACTCACTTCCTTTATTTATAATAAAAACCAACTCTCTAGCTAATTGCTAATATGCTGTCCCCAACAAACATGCATACTAATAGTCCTAATATATTCATATCTAGGGTTCTTGACTTCACCCACACTCCCAACCTCCTTTTCTTAGACTGTAATAATTCTTTACCCAATGACTTTGGATATTGTTTACGCACTAGATTTTTTAGTACAACAATTGTGGGGTTGAGGGATTGAATCTCCAACCACTTAAGGTGAAAGCATATTCCAATTATTGTTTAGCTAAGCTTTTTTTTTCTTTTTTCTTTTTTGTTTACACACTAGTTAATGGCAAGCTCACTAGTTAGAACTTCCTTTTTAAGAACTTCAACCTTTTGGCAATGAAGTTTTGAAAAAGCGAGTTTGGTTCACGTTCACTTAGAAAATGTCAATTGTAAATTTGAAACAATGCTCCATCGTTTTCATTTCAGTTCTATGCAAGAAATATGAAAAAGTTGTAGACGTGACTTGCATTTTGCTGAAAGCATATCTCTCGCTGCATTGATTGGTACAATGGTGTGGCACTCATATGATGTTTTTTTTATGCTAGGCCTGTGCTGATGGTCGGAGTATATCTGTTTGGAACCTTCCGTCTTCTGAATTCATTTCAAAAACTTTGACCCGTTCTTCATTGCAGGATATGGTTTTTTGTGATAATCAAGTGAGTCATTCTCCTCCAACTGATTATACTTCCACATTTTAATTGATGGAAATTAGCTCGCAATTTGGTATTGGTCAGAAATCTCTCTGTCACGTTTTCATTTTTCATTAGATGATCAGACAAGATATATGTATCTATTTCCAAATTTCTTGTACGTGATTTAGTGCTACAAAAAGGTCATTTTGCTTGCATAATTATTGTCAGACTTACAAGTTAAGAAGCATACATATTATGACCATGATACGACATGAGCCTAGGAAGAAGTTATCTAGAAAACTAGCACGAGTAAATCAAATACTGTCATCTTCAATATCTATTGCTATACCAGATCTTTTTGTCACCATTATACGTTCATTATTGTCTCTCCATGACCAGATATTAGGTGTTGGAGCAGAGCCATTTCTAACTCGATTCGACATAAATGGATCCGTGCTTTCACAAATACAATGCGCCCCTCAGTCAGCTTTTTCTGTCGCATTGCATCCATCTGGCGTATGTATAACTTAATTCCTTTTGTCTTTTGGTTTCCTTAGTCCTCTCTTTGGAACTTCTTCATGTATCTCTCAATTTAGCGTGACATTATGGGAAGATTAGAAGTTAGCGATCCGTTGGAACTGAGTATTGGACTCTGAAGCCAACTCCAATGGAGCAACACTTTATATGCAAGCCTTGGTGTTGTTGGATTTAGTTTTTAGGTGCTATCATCACTAAGTAAAGAATTCAACATCTTATAATCCGTTAAGGTTTTTGGTTTAGTGATGATTTAGCCTGGTATTAGAAGTTCTATGTTCGAACCCCCATAATATCATCGTTTCTCCAATCAATATTGATTCCTACCTTGTACAAAATTTTCAAGCCCACAGGTGAAGTAGAGGGTTGAAATGTTTTGATCAAATTTACCATAACCCATCAATTTGAGCGTTTGAGTTCAGTAATGATATAACAAATATTTCATCATTATATTTTACATAATGAATCATGCCATAATGGAACTCCCGAGAGGATAACCAAAATTCAATGAGCTTGCCTAGGCTATCTTACTACTACCTCTCATCAATTTGTGCCCAATGCTCATAAAACGATATAATCCTTCTCTCATTCTTGGATGGTTTATTTGTCTATTCAGGTCGCAGCAGTTGGAGGGTACGGTGGTCTCGTCGATGTTATCTCGCAGTTTGGAAGTCACTTATGCACATTCTGCTGTCAATACAGATAA

mRNA sequence

ATGTTGGGGGACGCAACGAATTGGGACGAAGCTGCCTACAGAGAGAGTATATATAAAGAAAGAGAGATTCAAACTCGTACTGTGTTCAGAACTGCATGGGCGCCTTCTTTAAATGGCTGCCCTGAGACCATTGTGGCTGCATCCAGTGATGGATCCGTTGCCTCTTACTCTATCGCTTCTTGCATCTCTAAGCTCCAATTTGGTTATGGAAATACTAAAAGTTTGTTAGCAGCAGAGCCTAATTGCTTCCTTCAAGGGCACGATGGGCCCACGTATGATGTCAAATTTTACGATAATGGTGACAATACTCTATTACTGAGCTGTGGGGATGATGGTCACATTCGAGGATGGAGGTGGAGAGATTGTACAGATATAAAAGTGCCCATTTCTTTTCAAGGTAGTCATATTGAGCCTGTAATGGACCTGATCAATCCTCAATTCAAAGGTCCTTGGGGTGCTCTTTCTCCAATCCCTGAAAATAATGCAATTGCTACTGATGCCCAGAGTGGATCCATTTTCTCTGCTGCTGGAGATTCTTGTGCGTATTGTTGGGATTTGGAGAGCGGTAAAGTTAAGTTGGTGTTTAAGGGGCACTCTGACTACTTGCACTGTATTGTTGCGCGAAACACTGTCAATCAAATCATAACTGGTTCAGAAGATGGTACAGCACGAATATGGGATTGCAAGAGTGGAAAGTGCATTCAACTAATTGACCCTGCTAAGGATAAGAAGTTGAAAGGGCATTTCTCATTTGTTAGATGCATTGCTCTTGATGCAAGTGAAAGCTGGTTGGCCTGTGCTGATGGTCGGAGTATATCTGTTTGGAACCTTCCGTCTTCTGAATTCATTTCAAAAACTTTGACCCGTTCTTCATTGCAGGATATGGTTTTTTGTGATAATCAAATATTAGGTGTTGGAGCAGAGCCATTTCTAACTCGATTCGACATAAATGGATCCGTGCTTTCACAAATACAATGCGCCCCTCAGTCAGCTTTTTCTGTCGCATTGCATCCATCTGGCGTCGCAGCAGTTGGAGGGTACGGTGGTCTCGTCGATGTTATCTCGCAGTTTGGAAGTCACTTATGCACATTCTGCTGTCAATACAGATAA

Coding sequence (CDS)

ATGTTGGGGGACGCAACGAATTGGGACGAAGCTGCCTACAGAGAGAGTATATATAAAGAAAGAGAGATTCAAACTCGTACTGTGTTCAGAACTGCATGGGCGCCTTCTTTAAATGGCTGCCCTGAGACCATTGTGGCTGCATCCAGTGATGGATCCGTTGCCTCTTACTCTATCGCTTCTTGCATCTCTAAGCTCCAATTTGGTTATGGAAATACTAAAAGTTTGTTAGCAGCAGAGCCTAATTGCTTCCTTCAAGGGCACGATGGGCCCACGTATGATGTCAAATTTTACGATAATGGTGACAATACTCTATTACTGAGCTGTGGGGATGATGGTCACATTCGAGGATGGAGGTGGAGAGATTGTACAGATATAAAAGTGCCCATTTCTTTTCAAGGTAGTCATATTGAGCCTGTAATGGACCTGATCAATCCTCAATTCAAAGGTCCTTGGGGTGCTCTTTCTCCAATCCCTGAAAATAATGCAATTGCTACTGATGCCCAGAGTGGATCCATTTTCTCTGCTGCTGGAGATTCTTGTGCGTATTGTTGGGATTTGGAGAGCGGTAAAGTTAAGTTGGTGTTTAAGGGGCACTCTGACTACTTGCACTGTATTGTTGCGCGAAACACTGTCAATCAAATCATAACTGGTTCAGAAGATGGTACAGCACGAATATGGGATTGCAAGAGTGGAAAGTGCATTCAACTAATTGACCCTGCTAAGGATAAGAAGTTGAAAGGGCATTTCTCATTTGTTAGATGCATTGCTCTTGATGCAAGTGAAAGCTGGTTGGCCTGTGCTGATGGTCGGAGTATATCTGTTTGGAACCTTCCGTCTTCTGAATTCATTTCAAAAACTTTGACCCGTTCTTCATTGCAGGATATGGTTTTTTGTGATAATCAAATATTAGGTGTTGGAGCAGAGCCATTTCTAACTCGATTCGACATAAATGGATCCGTGCTTTCACAAATACAATGCGCCCCTCAGTCAGCTTTTTCTGTCGCATTGCATCCATCTGGCGTCGCAGCAGTTGGAGGGTACGGTGGTCTCGTCGATGTTATCTCGCAGTTTGGAAGTCACTTATGCACATTCTGCTGTCAATACAGATAA

Protein sequence

MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIASCISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWRDCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSCAYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPAKDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSHLCTFCCQYR*

Homology

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BLAST of CSPI01G28330 vs. ExPASy Swiss-Prot
Match: Q8L4M1 (THO complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=THO6 PE=1 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 3.1e-132
Identity = 216/366 (59.02%), Postives = 286/366 (78.14%), Query Frame = 0


Query: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLN-GCPETIVAASSDGSVASYSIA 60
           M GDATNW+E  YRESI KEREI+TRTVFRTAWAP      P+  V ASSDG++A +S+ 
Sbjct: 1   MYGDATNWNEDEYRESILKEREIETRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLN 60

Query: 61  SCISK-LQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWR 120
           S +S+   FGY   + ++ AEP   ++ H+GP YDVKFY   ++ LLLSCGDDG +RGW+
Sbjct: 61  SLVSQSASFGYSKGQDVMVAEPERVVRAHEGPAYDVKFYGEDEDALLLSCGDDGRVRGWK 120

Query: 121 WRDCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGD 180
           WR+  +  V +  + +H++P+++LINPQ KGPWGALSP+PE NA++ D QSGS+F+AAGD
Sbjct: 121 WREFAESDVSLHLKENHLKPLLELINPQHKGPWGALSPMPEINAMSVDPQSGSVFTAAGD 180

Query: 181 SCAYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLID 240
           SCAYCWD+ESGK+K+ FKGHSDYLH +V+R++ +QI+TGSEDGTARIWDCK+GKC+++I 
Sbjct: 181 SCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVIG 240

Query: 241 PAKDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFC 300
            ++DKK +     V  +ALD SESWL C  G+++++WNLP+SE +      + +QD++F 
Sbjct: 241 -SQDKKSRLR---VSSMALDGSESWLVCGQGKNLALWNLPASECVQTIPIPAHVQDVMFD 300

Query: 301 DNQILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFG 360
           + QIL VGAEP L RFD+NG++LSQI CAP S FS++LHP+GV AVGGYGG+VDVISQFG
Sbjct: 301 EKQILTVGAEPLLRRFDLNGALLSQIHCAPCSVFSISLHPAGVVAVGGYGGIVDVISQFG 360

Query: 361 SHLCTF 365
           SHLCTF
Sbjct: 361 SHLCTF 362

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BLAST of CSPI01G28330 vs. ExPASy Swiss-Prot
Match: Q5XJS5 (THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 9.8e-30
Identity = 92/348 (26.44%), Postives = 160/348 (45.98%), Query Frame = 0


Query: 22  EIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIASCISKLQFGYGNTKSLLAAEPN 81
           E+   +VF  +++P    C   + A ++ G +A +S+++ +S          S  + +P 
Sbjct: 5   ELLHMSVFSQSFSP----CGRYLAAGNNYGEIAVFSLSAALSP-------DASERSQKPI 64

Query: 82  CFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWRDCTDIKVPISFQGSHIEPVMD 141
                HDGP + +        + LLS G +G I  W W                     +
Sbjct: 65  LNFTAHDGPVFSLL----STESHLLSAG-NGEISAWSW--------------------AE 124

Query: 142 LINPQFKGPW------GALSPIPENNAIATDAQSGSIFSAAGDSCAYCWDLESGKVKLVF 201
           LI    K  W           IPE NA+  + +  ++    GD+  +  D+E+G  K V 
Sbjct: 125 LIKKSTKAAWTRKPNYETSLEIPEINAMIINPKDNNLIVGGGDNNIHIMDMETGTFKSVL 184

Query: 202 KGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPAK-DKKLKGHF-SFVR 261
           KGH+DY+HC+  +    +I++G EDG  RIWD ++ + +  I+  K ++  +  F  ++ 
Sbjct: 185 KGHTDYIHCLSFKEREGEILSGGEDGAVRIWDSRTNRPVHCIEVFKYEECARPQFGKWIS 244

Query: 262 CIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTR 321
           C+A D+   W+ C  G S+S+W+L S    S        ++ V   + I+ VG  P+++ 
Sbjct: 245 CLATDS--DWMLCGGGPSLSLWHLRSMSPTSVFPLSGCQREAVSYQDLIMSVGEGPYVSH 304

Query: 322 FDINGSVLSQIQCAPQSAFSVALHPSG----VAAVGGYGGLVDVISQF 358
               G+V +QI C+P S  ++AL+       V  VGG    +DV + F
Sbjct: 305 CLHGGTVKAQIPCSPSSLNTLALNLKNTEHRVMTVGGSSHQIDVFTNF 314

[Close]

BLAST of CSPI01G28330 vs. ExPASy Swiss-Prot
Match: Q86W42 (THO complex subunit 6 homolog OS=Homo sapiens OX=9606 GN=THOC6 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.4e-28
Identity = 84/336 (25.00%), Postives = 157/336 (46.73%), Query Frame = 0


Query: 31  TAWAPSLNGCPETIVAASSDGSVASYSIASCISKLQFGYGNTKSLLAAEPNCFLQGHDGP 90
           T ++ S++ C + + A ++ G +A +S++S +S       +     + +P    Q HDGP
Sbjct: 26  TIFSQSVSPCGKFLAAGNNYGQIAIFSLSSALS-------SEAKEESKKPVVTFQAHDGP 85

Query: 91  TYDVKFYDNGDNTLLLSCGDDGHIRGWRWRDCTDIKVPISFQGSHIEPVMDLINPQFKGP 150
            Y +   D      LLS G DG ++ W W +               +   +L   Q   P
Sbjct: 86  VYSMVSTDRH----LLSAG-DGEVKAWLWAEMLK------------KGCKELWRRQ--PP 145

Query: 151 WGALSPIPENNAIATDAQSGSIFSAAGDSCAYCWDLESGKVKLVFKGHSDYLHCIVARNT 210
           +     +PE NA+    +  S+  A GD   +  DLE+G    V +GH+DY+HC+  R  
Sbjct: 146 YRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRVLRGHTDYIHCLALRER 205

Query: 211 VNQIITGSEDGTARIWDCKSGKCIQLIDPAKDKKLKGHFS--FVRCIALDASESWLACAD 270
             ++++G EDG  R+WD ++ K +Q I+  K ++     +  ++ C+A D+   W+ C  
Sbjct: 206 SPEVLSGGEDGAVRLWDLRTAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGG 265

Query: 271 GRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQIQCAP 330
           G ++++W+L SS   +    R+  + + F  + IL  G    + ++ ++G + +Q+  + 
Sbjct: 266 GPALTLWHLRSSTPTTIFPIRAPQKHVTFYQDLILSAGQGRCVNQWQLSGELKAQVPGSS 325

Query: 331 QSAFSVALHPSGVA------AVGGYGGLVDVISQFG 359
               S++L+    A         G    VDV +  G
Sbjct: 326 PGLLSLSLNQQPAAPECKVLTAAGNSCRVDVFTNLG 333

[Close]

BLAST of CSPI01G28330 vs. ExPASy Swiss-Prot
Match: Q5U4D9 (THO complex subunit 6 homolog OS=Mus musculus OX=10090 GN=Thoc6 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.7e-27
Identity = 82/336 (24.40%), Postives = 154/336 (45.83%), Query Frame = 0


Query: 31  TAWAPSLNGCPETIVAASSDGSVASYSIASCISKLQFGYGNTKSLLAAEPNCFLQGHDGP 90
           T ++ S++ C + + A ++ G +A +S+++ +S       +     + +P      HDGP
Sbjct: 26  TIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALS-------SEAKEESKKPVVVFHAHDGP 85

Query: 91  TYDVKFYDNGDNTLLLSCGDDGHIRGWRWRDCTDIKVPISFQGSHIEPVMDLINPQFKGP 150
            Y +   D      LLS G DG ++GW W +               +   +L   Q   P
Sbjct: 86  VYSMVSTDRH----LLSAG-DGEVKGWLWAEILK------------KGCKELWRRQ--PP 145

Query: 151 WGALSPIPENNAIATDAQSGSIFSAAGDSCAYCWDLESGKVKLVFKGHSDYLHCIVARNT 210
           +     +PE NA+    +  S+  A GD   +  DLE+G      +GH+DY+HC+  R  
Sbjct: 146 YRTSLEVPEINALLLVPKENSLILAGGDCQLHSMDLETGAFTRALRGHTDYIHCLALRER 205

Query: 211 VNQIITGSEDGTARIWDCKSGKCIQLIDPAKDKKLKGHFS--FVRCIALDASESWLACAD 270
             ++++G EDG  R+WD +  K +Q I+  K ++     +  ++ C+A D+   W+ C  
Sbjct: 206 SPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGG 265

Query: 271 GRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQIQCAP 330
           G ++++W+L SS   +    R+  + + F  + IL  G    +  + ++G + +Q+  + 
Sbjct: 266 GPALTLWHLRSSTPTTVFPIRAPQKHVTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSS 325

Query: 331 QSAFSVALHPSGVA------AVGGYGGLVDVISQFG 359
               S++L+    A         G    VDV +  G
Sbjct: 326 PGLLSLSLNQQPAAPECKVLTASGNSCRVDVFTNLG 333

[Close]

BLAST of CSPI01G28330 vs. ExPASy Swiss-Prot
Match: Q6AY87 (THO complex subunit 6 homolog OS=Rattus norvegicus OX=10116 GN=Thoc6 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.7e-27
Identity = 82/336 (24.40%), Postives = 154/336 (45.83%), Query Frame = 0


Query: 31  TAWAPSLNGCPETIVAASSDGSVASYSIASCISKLQFGYGNTKSLLAAEPNCFLQGHDGP 90
           T ++ S++ C + + A ++ G +A +S+++ +S       +     + +P      HDGP
Sbjct: 26  TIFSQSVSPCGKFLAAGNNYGQIAIFSLSAALS-------SEAKEESKKPMVTFHAHDGP 85

Query: 91  TYDVKFYDNGDNTLLLSCGDDGHIRGWRWRDCTDIKVPISFQGSHIEPVMDLINPQFKGP 150
            Y +   D      LLS G DG ++GW W +               +   +L   Q   P
Sbjct: 86  VYSMVSTDRH----LLSAG-DGEVKGWLWAEILK------------KGCKELWRRQ--PP 145

Query: 151 WGALSPIPENNAIATDAQSGSIFSAAGDSCAYCWDLESGKVKLVFKGHSDYLHCIVARNT 210
           +     +PE NA+    +  S+  A GD   +  DLE+G      +GH+DY+HC+  R  
Sbjct: 146 YRTSLEVPEINALLLVPKENSLILAGGDCQLHTMDLETGTFTRALRGHTDYIHCLALRER 205

Query: 211 VNQIITGSEDGTARIWDCKSGKCIQLIDPAKDKKLKGHFS--FVRCIALDASESWLACAD 270
             ++++G EDG  R+WD +  K +Q I+  K ++     +  ++ C+A D+   W+ C  
Sbjct: 206 SPEVLSGGEDGAVRLWDLRIAKEVQTIEVYKHEECSRPHNGRWIGCLATDS--DWMVCGG 265

Query: 271 GRSISVWNLPSSEFISKTLTRSSLQDMVFCDNQILGVGAEPFLTRFDINGSVLSQIQCAP 330
           G ++++W+L SS   +    R+  + + F  + IL  G    +  + ++G + +Q+  + 
Sbjct: 266 GPALTLWHLRSSTPTTVFPIRAPQKHVTFYQDLILSAGQGCCVNHWQLSGELKAQVPGSS 325

Query: 331 QSAFSVALHPSGVA------AVGGYGGLVDVISQFG 359
               S++L+    A         G    VDV +  G
Sbjct: 326 PGLLSLSLNQQPAAPECKVLTASGNSCRVDVFTNLG 333

[Close]

BLAST of CSPI01G28330 vs. ExPASy TrEMBL
Match: A0A0A0LWJ2 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G589670 PE=3 SV=1)

HSP 1 Score: 774.6 bits (1999), Expect = 1.8e-220
Identity = 367/369 (99.46%), Postives = 368/369 (99.73%), Query Frame = 0


Query: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60
           MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS
Sbjct: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 DCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180
           DCTDIKVPIS QGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC
Sbjct: 121 DCTDIKVPISLQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240
           AYCWDLESGKVK+VFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA
Sbjct: 181 AYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240

Query: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN 300
           KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN
Sbjct: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN 300

Query: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360
           QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH
Sbjct: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTFCCQYR
Sbjct: 361 LCTFCCQYR 369

[Close]

BLAST of CSPI01G28330 vs. ExPASy TrEMBL
Match: A0A5A7UQQ6 (THO complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001940 PE=3 SV=1)

HSP 1 Score: 764.2 bits (1972), Expect = 2.5e-217
Identity = 360/369 (97.56%), Postives = 366/369 (99.19%), Query Frame = 0


Query: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60
           ML DATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS
Sbjct: 1   MLADATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKLQFGYGNTKSLLAAEP+CFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLQFGYGNTKSLLAAEPHCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 DCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180
           DCTDI+VPI  QGSHIEPVMDL+NPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC
Sbjct: 121 DCTDIEVPIYLQGSHIEPVMDLMNPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240
           AYCWDLESGKVK+VFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA
Sbjct: 181 AYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240

Query: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN 300
           KDKKLKGHFSFVRCIALDASESWLACADGRS+SVWNLPSSEFISKTLTRSSLQDMVFCDN
Sbjct: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSLSVWNLPSSEFISKTLTRSSLQDMVFCDN 300

Query: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360
           QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGL+DVISQFGSH
Sbjct: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLIDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTFCCQYR
Sbjct: 361 LCTFCCQYR 369

[Close]

BLAST of CSPI01G28330 vs. ExPASy TrEMBL
Match: A0A1S3BQ99 (THO complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103492340 PE=3 SV=1)

HSP 1 Score: 764.2 bits (1972), Expect = 2.5e-217
Identity = 360/369 (97.56%), Postives = 366/369 (99.19%), Query Frame = 0


Query: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60
           ML DATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS
Sbjct: 1   MLADATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKLQFGYGNTKSLLAAEP+CFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLQFGYGNTKSLLAAEPHCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 DCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180
           DCTDI+VPI  QGSHIEPVMDL+NPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC
Sbjct: 121 DCTDIEVPIYLQGSHIEPVMDLMNPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240
           AYCWDLESGKVK+VFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA
Sbjct: 181 AYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240

Query: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN 300
           KDKKLKGHFSFVRCIALDASESWLACADGRS+SVWNLPSSEFISKTLTRSSLQDMVFCDN
Sbjct: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSLSVWNLPSSEFISKTLTRSSLQDMVFCDN 300

Query: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360
           QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGL+DVISQFGSH
Sbjct: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLIDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTFCCQYR
Sbjct: 361 LCTFCCQYR 369

[Close]

BLAST of CSPI01G28330 vs. ExPASy TrEMBL
Match: A0A6J1D376 (THO complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111016586 PE=3 SV=1)

HSP 1 Score: 716.5 bits (1848), Expect = 5.9e-203
Identity = 333/369 (90.24%), Postives = 351/369 (95.12%), Query Frame = 0


Query: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60
           M  DATNWDE AYRESI+KERE+QTRTVFRTAWAPSLNG PETIV ASSDGS+ASYSIAS
Sbjct: 1   MSADATNWDEDAYRESIFKEREVQTRTVFRTAWAPSLNGGPETIVVASSDGSIASYSIAS 60

Query: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKL FGY N KS LAAEP+CFLQGHDGP YDVKFYD+GDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLHFGYSNAKSFLAAEPHCFLQGHDGPAYDVKFYDSGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 DCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180
           +CTDI++PI FQGSHIEPVMDL NPQ+KGPWGALSPIPENNAIATDAQ GSIFSAAGDSC
Sbjct: 121 ECTDIEMPIYFQGSHIEPVMDLTNPQYKGPWGALSPIPENNAIATDAQGGSIFSAAGDSC 180

Query: 181 AYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240
           AYCWDLES K+K+VFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQ+IDPA
Sbjct: 181 AYCWDLESCKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQVIDPA 240

Query: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN 300
           KDKKLKGHFS +RCIALDASESWLACADGRS+SVWNLPSSEFISKTLTRSS+QDM FCDN
Sbjct: 241 KDKKLKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSEFISKTLTRSSMQDMAFCDN 300

Query: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360
           QILG+GAEP LTRFD+NGS+LSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH
Sbjct: 301 QILGIGAEPSLTRFDVNGSILSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTF CQYR
Sbjct: 361 LCTFRCQYR 369

[Close]

BLAST of CSPI01G28330 vs. ExPASy TrEMBL
Match: A0A6J1F6F8 (THO complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111441243 PE=3 SV=1)

HSP 1 Score: 714.9 bits (1844), Expect = 1.7e-202
Identity = 332/370 (89.73%), Postives = 357/370 (96.49%), Query Frame = 0


Query: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60
           MLGDATNWDE AYRES+YKERE+QTRTVFRTAWAPSL+GCPE+IV ASSDGS+ASYSIAS
Sbjct: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60

Query: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKL  GYGNTKSLLAAEP+CFLQGHDGPTYDVKF+D GDNTLLLSCGDDGHIRGWRW 
Sbjct: 61  CISKLHSGYGNTKSLLAAEPHCFLQGHDGPTYDVKFFDAGDNTLLLSCGDDGHIRGWRWN 120

Query: 121 DCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180
           +CTDI+VPI  QGSHIEPVMDL+NPQ+KGPWGALSPIPENNAIAT+AQSGSIFSAAGDSC
Sbjct: 121 ECTDIEVPIYLQGSHIEPVMDLMNPQYKGPWGALSPIPENNAIATNAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240
           AYCWDLESGK+K+VFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCK+GKCIQL+DPA
Sbjct: 181 AYCWDLESGKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKTGKCIQLLDPA 240

Query: 241 KD-KKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCD 300
           KD KK KG+FS VRCIALDASESWLACADGRS SVWNLP+S+FIS+TLTRSS+QDMVFCD
Sbjct: 241 KDNKKQKGNFSCVRCIALDASESWLACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCD 300

Query: 301 NQILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGS 360
           NQILGVGAEP LTRFDI+GS+LS+IQCAPQSAFSVA+HPSGVAAVGGYGGLVDVISQFGS
Sbjct: 301 NQILGVGAEPLLTRFDIHGSILSEIQCAPQSAFSVAVHPSGVAAVGGYGGLVDVISQFGS 360

Query: 361 HLCTFCCQYR 370
           HLCTFCCQYR
Sbjct: 361 HLCTFCCQYR 370

[Close]

BLAST of CSPI01G28330 vs. NCBI nr
Match: XP_004144008.1 (THO complex subunit 6 [Cucumis sativus] >KGN66260.1 hypothetical protein Csa_007648 [Cucumis sativus])

HSP 1 Score: 774.6 bits (1999), Expect = 3.8e-220
Identity = 367/369 (99.46%), Postives = 368/369 (99.73%), Query Frame = 0


Query: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60
           MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS
Sbjct: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 DCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180
           DCTDIKVPIS QGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC
Sbjct: 121 DCTDIKVPISLQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240
           AYCWDLESGKVK+VFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA
Sbjct: 181 AYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240

Query: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN 300
           KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN
Sbjct: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN 300

Query: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360
           QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH
Sbjct: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTFCCQYR
Sbjct: 361 LCTFCCQYR 369

[Close]

BLAST of CSPI01G28330 vs. NCBI nr
Match: XP_008450878.1 (PREDICTED: THO complex subunit 6 [Cucumis melo] >KAA0055809.1 THO complex subunit 6 [Cucumis melo var. makuwa] >TYK10060.1 THO complex subunit 6 [Cucumis melo var. makuwa])

HSP 1 Score: 764.2 bits (1972), Expect = 5.1e-217
Identity = 360/369 (97.56%), Postives = 366/369 (99.19%), Query Frame = 0


Query: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60
           ML DATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS
Sbjct: 1   MLADATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60

Query: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKLQFGYGNTKSLLAAEP+CFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLQFGYGNTKSLLAAEPHCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 DCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180
           DCTDI+VPI  QGSHIEPVMDL+NPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC
Sbjct: 121 DCTDIEVPIYLQGSHIEPVMDLMNPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240
           AYCWDLESGKVK+VFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA
Sbjct: 181 AYCWDLESGKVKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240

Query: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN 300
           KDKKLKGHFSFVRCIALDASESWLACADGRS+SVWNLPSSEFISKTLTRSSLQDMVFCDN
Sbjct: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSLSVWNLPSSEFISKTLTRSSLQDMVFCDN 300

Query: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360
           QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGL+DVISQFGSH
Sbjct: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLIDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTFCCQYR
Sbjct: 361 LCTFCCQYR 369

[Close]

BLAST of CSPI01G28330 vs. NCBI nr
Match: XP_038880261.1 (THO complex subunit 6 isoform X4 [Benincasa hispida] >XP_038880262.1 THO complex subunit 6 isoform X4 [Benincasa hispida])

HSP 1 Score: 747.3 bits (1928), Expect = 6.4e-212
Identity = 348/369 (94.31%), Postives = 363/369 (98.37%), Query Frame = 0


Query: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60
           ML DATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGS+ASYSIAS
Sbjct: 1   MLADATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSIASYSIAS 60

Query: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKL FGYGNT+SLLAAEP+CFLQGHDGP YDVKFYDNG+NTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLHFGYGNTRSLLAAEPHCFLQGHDGPAYDVKFYDNGNNTLLLSCGDDGHIRGWRWR 120

Query: 121 DCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180
           +CTDI+VPI  QGSHIEPVMDL+NPQ+KGPWGALSP+PENNAIA+DAQSGSIFSAAGDSC
Sbjct: 121 ECTDIEVPIYLQGSHIEPVMDLMNPQYKGPWGALSPMPENNAIASDAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240
           AYCWDLESGK+K+VFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA
Sbjct: 181 AYCWDLESGKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240

Query: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN 300
           KDKKLKGHFS +RCIALDASESWLACADGRS+SVWNLPSSEFISKTLTRSS+QDMVFCDN
Sbjct: 241 KDKKLKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSEFISKTLTRSSMQDMVFCDN 300

Query: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360
           QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH
Sbjct: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTFCCQYR
Sbjct: 361 LCTFCCQYR 369

[Close]

BLAST of CSPI01G28330 vs. NCBI nr
Match: XP_022147721.1 (THO complex subunit 6 [Momordica charantia])

HSP 1 Score: 716.5 bits (1848), Expect = 1.2e-202
Identity = 333/369 (90.24%), Postives = 351/369 (95.12%), Query Frame = 0


Query: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60
           M  DATNWDE AYRESI+KERE+QTRTVFRTAWAPSLNG PETIV ASSDGS+ASYSIAS
Sbjct: 1   MSADATNWDEDAYRESIFKEREVQTRTVFRTAWAPSLNGGPETIVVASSDGSIASYSIAS 60

Query: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKL FGY N KS LAAEP+CFLQGHDGP YDVKFYD+GDNTLLLSCGDDGHIRGWRWR
Sbjct: 61  CISKLHFGYSNAKSFLAAEPHCFLQGHDGPAYDVKFYDSGDNTLLLSCGDDGHIRGWRWR 120

Query: 121 DCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180
           +CTDI++PI FQGSHIEPVMDL NPQ+KGPWGALSPIPENNAIATDAQ GSIFSAAGDSC
Sbjct: 121 ECTDIEMPIYFQGSHIEPVMDLTNPQYKGPWGALSPIPENNAIATDAQGGSIFSAAGDSC 180

Query: 181 AYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240
           AYCWDLES K+K+VFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQ+IDPA
Sbjct: 181 AYCWDLESCKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQVIDPA 240

Query: 241 KDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCDN 300
           KDKKLKGHFS +RCIALDASESWLACADGRS+SVWNLPSSEFISKTLTRSS+QDM FCDN
Sbjct: 241 KDKKLKGHFSCIRCIALDASESWLACADGRSLSVWNLPSSEFISKTLTRSSMQDMAFCDN 300

Query: 301 QILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360
           QILG+GAEP LTRFD+NGS+LSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH
Sbjct: 301 QILGIGAEPSLTRFDVNGSILSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGSH 360

Query: 361 LCTFCCQYR 370
           LCTF CQYR
Sbjct: 361 LCTFRCQYR 369

[Close]

BLAST of CSPI01G28330 vs. NCBI nr
Match: XP_022934010.1 (THO complex subunit 6 [Cucurbita moschata])

HSP 1 Score: 714.9 bits (1844), Expect = 3.5e-202
Identity = 332/370 (89.73%), Postives = 357/370 (96.49%), Query Frame = 0


Query: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLNGCPETIVAASSDGSVASYSIAS 60
           MLGDATNWDE AYRES+YKERE+QTRTVFRTAWAPSL+GCPE+IV ASSDGS+ASYSIAS
Sbjct: 1   MLGDATNWDEDAYRESLYKEREVQTRTVFRTAWAPSLSGCPESIVVASSDGSIASYSIAS 60

Query: 61  CISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR 120
           CISKL  GYGNTKSLLAAEP+CFLQGHDGPTYDVKF+D GDNTLLLSCGDDGHIRGWRW 
Sbjct: 61  CISKLHSGYGNTKSLLAAEPHCFLQGHDGPTYDVKFFDAGDNTLLLSCGDDGHIRGWRWN 120

Query: 121 DCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSC 180
           +CTDI+VPI  QGSHIEPVMDL+NPQ+KGPWGALSPIPENNAIAT+AQSGSIFSAAGDSC
Sbjct: 121 ECTDIEVPIYLQGSHIEPVMDLMNPQYKGPWGALSPIPENNAIATNAQSGSIFSAAGDSC 180

Query: 181 AYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPA 240
           AYCWDLESGK+K+VFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCK+GKCIQL+DPA
Sbjct: 181 AYCWDLESGKIKMVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKTGKCIQLLDPA 240

Query: 241 KD-KKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFCD 300
           KD KK KG+FS VRCIALDASESWLACADGRS SVWNLP+S+FIS+TLTRSS+QDMVFCD
Sbjct: 241 KDNKKQKGNFSCVRCIALDASESWLACADGRSFSVWNLPASDFISRTLTRSSMQDMVFCD 300

Query: 301 NQILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFGS 360
           NQILGVGAEP LTRFDI+GS+LS+IQCAPQSAFSVA+HPSGVAAVGGYGGLVDVISQFGS
Sbjct: 301 NQILGVGAEPLLTRFDIHGSILSEIQCAPQSAFSVAVHPSGVAAVGGYGGLVDVISQFGS 360

Query: 361 HLCTFCCQYR 370
           HLCTFCCQYR
Sbjct: 361 HLCTFCCQYR 370

[Close]

BLAST of CSPI01G28330 vs. TAIR 10
Match: AT2G19430.1 (DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 )

HSP 1 Score: 473.0 bits (1216), Expect = 2.2e-133
Identity = 216/366 (59.02%), Postives = 286/366 (78.14%), Query Frame = 0


Query: 1   MLGDATNWDEAAYRESIYKEREIQTRTVFRTAWAPSLN-GCPETIVAASSDGSVASYSIA 60
           M GDATNW+E  YRESI KEREI+TRTVFRTAWAP      P+  V ASSDG++A +S+ 
Sbjct: 1   MYGDATNWNEDEYRESILKEREIETRTVFRTAWAPPARISNPDAFVVASSDGTLAFHSLN 60

Query: 61  SCISK-LQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWR 120
           S +S+   FGY   + ++ AEP   ++ H+GP YDVKFY   ++ LLLSCGDDG +RGW+
Sbjct: 61  SLVSQSASFGYSKGQDVMVAEPERVVRAHEGPAYDVKFYGEDEDALLLSCGDDGRVRGWK 120

Query: 121 WRDCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGD 180
           WR+  +  V +  + +H++P+++LINPQ KGPWGALSP+PE NA++ D QSGS+F+AAGD
Sbjct: 121 WREFAESDVSLHLKENHLKPLLELINPQHKGPWGALSPMPEINAMSVDPQSGSVFTAAGD 180

Query: 181 SCAYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLID 240
           SCAYCWD+ESGK+K+ FKGHSDYLH +V+R++ +QI+TGSEDGTARIWDCK+GKC+++I 
Sbjct: 181 SCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWDCKTGKCVKVIG 240

Query: 241 PAKDKKLKGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMVFC 300
            ++DKK +     V  +ALD SESWL C  G+++++WNLP+SE +      + +QD++F 
Sbjct: 241 -SQDKKSRLR---VSSMALDGSESWLVCGQGKNLALWNLPASECVQTIPIPAHVQDVMFD 300

Query: 301 DNQILGVGAEPFLTRFDINGSVLSQIQCAPQSAFSVALHPSGVAAVGGYGGLVDVISQFG 360
           + QIL VGAEP L RFD+NG++LSQI CAP S FS++LHP+GV AVGGYGG+VDVISQFG
Sbjct: 301 EKQILTVGAEPLLRRFDLNGALLSQIHCAPCSVFSISLHPAGVVAVGGYGGIVDVISQFG 360

Query: 361 SHLCTF 365
           SHLCTF
Sbjct: 361 SHLCTF 362

[Close]

BLAST of CSPI01G28330 vs. TAIR 10
Match: AT2G43770.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 5.6e-12
Identity = 66/231 (28.57%), Postives = 90/231 (38.96%), Query Frame = 0


Query: 68  GYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWR-DCTDIK 127
           G   T SL A  P   L GH    Y +KF  N   TL+ S   D  I  WR   DC +  
Sbjct: 35  GKNRTSSLEA--PIMLLSGHPSAVYTMKF--NPAGTLIASGSHDREIFLWRVHGDCKNFM 94

Query: 128 VPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSCAYCWDL 187
           V       H   ++DL        W               +    I SA+ D     WD+
Sbjct: 95  V----LKGHKNAILDL-------HW--------------TSDGSQIVSASPDKTVRAWDV 154

Query: 188 ESGKVKLVFKGHSDYLH-CIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPAKDKKL 247
           E+GK       HS +++ C   R     II+GS+DGTA++WD +    IQ   P K +  
Sbjct: 155 ETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGAIQTF-PDKYQIT 214

Query: 248 KGHFSFVRCIALDASESWLACADGRSISVWNLPSSEFISKTLTRSSLQDMV 297
              FS       DA++          + VW+L   E    T+T    QD +
Sbjct: 215 AVSFS-------DAADKIFTGGVDNDVKVWDLRKGE---ATMTLEGHQDTI 225

[Close]

BLAST of CSPI01G28330 vs. TAIR 10
Match: AT5G64730.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 4.7e-11
Identity = 41/161 (25.47%), Postives = 67/161 (41.61%), Query Frame = 0


Query: 84  LQGHDGPTYDVKFYDNGDNTLLLSCGDDGHIRGWRWRDCTDIKVPISFQGSHIEPVMDLI 143
           L+GH+G     +F  NGD    L+CG D  IR W         + I    SH   V D  
Sbjct: 14  LKGHEGAVLAARF--NGDGNYALTCGKDRTIRLWN----PHRGILIKTYKSHGREVRD-- 73

Query: 144 NPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSCAYCWDLESGKVKLVFKGHSDYLH 203
                              +   + +    S  GD   Y WD+ +G+V   F+GH   ++
Sbjct: 74  -------------------VHVTSDNAKFCSCGGDRQVYYWDVSTGRVIRKFRGHDGEVN 133

Query: 204 CIVARNTVNQIITGSEDGTARIWDCKSGKC--IQLIDPAKD 243
            +   ++ + +++   D + R+WDC+S     +Q+ID   D
Sbjct: 134 AVKFNDSSSVVVSAGFDRSLRVWDCRSHSVEPVQIIDTFLD 147

[Close]

BLAST of CSPI01G28330 vs. TAIR 10
Match: AT1G73720.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-10
Identity = 60/233 (25.75%), Postives = 96/233 (41.20%), Query Frame = 0


Query: 48  SSDGS-VASYSIASCISKLQFGYGNTKSLLAAEPNCFLQGHDGPTYDVKFYDNGDNTLLL 107
           S DG  +AS S+   I    +  G  K  L  + +     HD P   + F  + D+ +L 
Sbjct: 222 SPDGQFLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDF--SRDSEMLA 281

Query: 108 SCGDDGHIRGWRWRDCTDIKVPISFQGSHIEPVMDLINPQFKGPWGALSPIPENNAIATD 167
           S   DG I+ WR R      V I    +H + V                      +++  
Sbjct: 282 SGSQDGKIKIWRIR----TGVCIRRFDAHSQGV---------------------TSLSFS 341

Query: 168 AQSGSIFSAAGDSCAYCWDLESGKVKLVFKGHSDYLHCIVARNTVNQIITGSEDGTARIW 227
                + S + D  A    L+SGK+   F+GH+ Y++  +  +  ++IIT S D T ++W
Sbjct: 342 RDGSQLLSTSFDQTARIHGLKSGKLLKEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVW 401

Query: 228 DCKSGKCIQLIDPAKDKKLKGHFSFVRCIAL--DASESWLACADGRSISVWNL 278
           D K+  C+Q   P     L+G  + V  I L    +E  + C    SI +  L
Sbjct: 402 DSKTTDCLQTFKP--PPPLRGTDASVNSIHLFPKNTEHIVVCNKTSSIYIMTL 425

[Close]

BLAST of CSPI01G28330 vs. TAIR 10
Match: AT3G49660.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 4.0e-10
Identity = 33/106 (31.13%), Postives = 57/106 (53.77%), Query Frame = 0


Query: 137 EPVMDLINPQFKGPWGALSPIPENNAIATDAQSGSIFSAAGDSCAYCWDLESGKVKLVFK 196
           +P+ + +  +F G    +S +    A ++DA+   I SA+ D     WD+E+G +     
Sbjct: 58  DPIAEPVQ-EFTGHENGISDV----AFSSDAR--FIVSASDDKTLKLWDVETGSLIKTLI 117

Query: 197 GHSDYLHCIVARNTVNQIITGSEDGTARIWDCKSGKCIQLIDPAKD 243
           GH++Y  C+      N I++GS D T RIWD  +GKC++++    D
Sbjct: 118 GHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSD 156

The following BLAST results are available for this feature:

BLAST of CSPI01G28330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L4M1	3.1e-132	59.02	THO complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=THO6 PE=1 SV=1	[more]
Q5XJS5	9.8e-30	26.44	THO complex subunit 6 homolog OS=Danio rerio OX=7955 GN=thoc6 PE=2 SV=1	[more]
Q86W42	2.4e-28	25.00	THO complex subunit 6 homolog OS=Homo sapiens OX=9606 GN=THOC6 PE=1 SV=1	[more]
Q5U4D9	2.7e-27	24.40	THO complex subunit 6 homolog OS=Mus musculus OX=10090 GN=Thoc6 PE=1 SV=1	[more]
Q6AY87	2.7e-27	24.40	THO complex subunit 6 homolog OS=Rattus norvegicus OX=10116 GN=Thoc6 PE=2 SV=1	[more]

BLAST of CSPI01G28330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWJ2	1.8e-220	99.46	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A5A7UQQ6	2.5e-217	97.56	THO complex subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16...	[more]
A0A1S3BQ99	2.5e-217	97.56	THO complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103492340 PE=3 SV=1	[more]
A0A6J1D376	5.9e-203	90.24	THO complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111016586 PE=3 SV=1	[more]
A0A6J1F6F8	1.7e-202	89.73	THO complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111441243 PE=3 SV=1	[more]

BLAST of CSPI01G28330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144008.1	3.8e-220	99.46	THO complex subunit 6 [Cucumis sativus] >KGN66260.1 hypothetical protein Csa_007...	[more]
XP_008450878.1	5.1e-217	97.56	PREDICTED: THO complex subunit 6 [Cucumis melo] >KAA0055809.1 THO complex subuni...	[more]
XP_038880261.1	6.4e-212	94.31	THO complex subunit 6 isoform X4 [Benincasa hispida] >XP_038880262.1 THO complex...	[more]
XP_022147721.1	1.2e-202	90.24	THO complex subunit 6 [Momordica charantia]	[more]
XP_022934010.1	3.5e-202	89.73	THO complex subunit 6 [Cucurbita moschata]	[more]

BLAST of CSPI01G28330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19430.1	2.2e-133	59.02	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1	[more]
AT2G43770.1	5.6e-12	28.57	Transducin/WD40 repeat-like superfamily protein	[more]
AT5G64730.1	4.7e-11	25.47	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G73720.1	1.4e-10	25.75	transducin family protein / WD-40 repeat family protein	[more]
AT3G49660.1	4.0e-10	31.13	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 77..118 e-value: 4.9E-4 score: 29.4 coord: 317..355 e-value: 63.0 score: 5.7 coord: 188..227 e-value: 2.7E-6 score: 36.9 coord: 150..185 e-value: 390.0 score: 0.7 coord: 238..276 e-value: 0.17 score: 21.0
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 84..117 e-value: 0.021 score: 15.7 coord: 243..276 e-value: 9.7E-5 score: 23.1 coord: 192..227 e-value: 7.0E-4 score: 20.4
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 84..117 score: 8.937796
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 195..236 score: 13.148488
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 158..366 e-value: 2.2E-25 score: 90.9
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 14..156 e-value: 2.6E-11 score: 45.3
IPR042626	THO complex subunit 6	PANTHER	PTHR44411	THO COMPLEX SUBUNIT 6 HOMOLOG	coord: 9..366
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 195..227 score: 10.126507
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 33..357

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G28330.1	CSPI01G28330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009788	negative regulation of abscisic acid-activated signaling pathway
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006413	translational initiation
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0000347	THO complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0003743	translation initiation factor activity