CSPI01G27200 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G27200
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Superoxide dismutase [Cu-Zn]
Location	Chr1: 22104366 .. 22107526 (+)
RNA-Seq Expression	CSPI01G27200
Synteny	CSPI01G27200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCACTATTGAAGTATTAACACATGGAGTCCTCTATATAAATTTCCAATAGCCCTAAACTTTCTTCATTTCTAGACTCTTCCTTCCATTCAATCTCACCTCTGCCTTCTCTTTCTTCTGTCCAAGGGGTGTTCTGAGGTCAGCTCTCTCTTTCCCATCATTTTTTTTGCCTTTCATATCCCTTGTTTTTCTTCAATTTGATCTGGGTTTAGCTGTTTTAGCTCCTTCTAATTAATGATGTTTTTCTCGAAATTTTACATGTATTCAGCTTAAATTATTGGTTACATGCTTCCCGATGATGTGATTCCGCCTTCTTTTAGTGGGATTTTGTACTGTTAATTGCGCATCATGACTGTGTTGGTTGTTTTTGTTCATTATTCGATGTCGTTGACTGATTTTAGATTGTATTGAACTTGTGGGTACTCTTAATAATCGGTCTAATTTTATACCCACCTTACAGAATTTTGAGCTTGGTCTTGTTTTTTCGTTTTTTTCTTTGAAGTGATGTGCTTTTTTTGTTGAGCTTGTTTTCTTGTGTGTTCTCTTGTATATATTCTTTCATTTCTGTCAATGAAAGAGGGTTTTTTTTTTTGTAAAAATACATTGCTCGACTAATTATTTTGGTCCTTTCTGCACATGAGTTGAAGTTATGAATTGCCAAAATGATGTTTCGTGTGAAGGATATCGTAATTGGGTGGTGTCGTATTCTTAATTCATTGGTTTCTTTTGTTGATCTCATGTTTTTGTTGGTTTTATTCTAATTATGTTGAAGTGTGTTAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAGTAGTGAGGGTGTTAGTGGAACTATCTTTTTCACCCAAGAAGGAGACGGTAATCTGGTTAATGGTTTCGTGTAGACGGTCTATGTTCATTTCTTTTCTATCTTGTACTTAGTCCAAAGAGTTTTCAGGTCCAACCACTGTTACGGGTAATGTTTCTGGTCTCAAGCCCGGGCTTCATGGATTCCATGTTCACGCCTTAGGTGACACAACCAATGGCTGCATGTCGACTGGTATCGTTTTAGACATTTAAGATCTTTTATTTGGCCTTTCTATTTTGAAGGAACGTAGATGTTTGTTAAAAAATTGAATATAGATCCTTTAATTTATCTCAACATTAAAATTTCTCAAAATATTTACAGGGCCACATTTCAACCCTGCTGGAAAACAACATGGTGCTCCCGAGGACGAGAACCGCCATGCCGGTGATTTAGGGAACATTATCGTTGGTGAAGATGGTCTGTTTCTCATTCTTTAACAATTCATTGAATAAGTTTTATTCTTGTCGTGTTGTGCTCCATTTCCTTTTTTGTATATCTTTTACATTACAATGGCTTAAGGTATATTTGTAAAAGTATGCTATTTTGTGTTGTTTTAGATTTCTCCTTTATATTTAGCTAATTTGATGTTGGATTTCATACCTTATTCAAACATTGTTCTATTGATTTACTGGTTAAATGCTAATACTTTGAATATTTTGTACAGGCAAGGCTAACTTCACCATTACTGACTGCCAGGTTTGTCCCTATTTAATTCATCGTGTTAGGGCATCCAATTGTAAGGGTCTTACTCCTTTTTCTGAGCTTTAGATCATATATGCAGATTCCTCTCTGTGGACATGAATCCATTATCGGAAGGGCTGTTGTGGTTCATGGAGACCCTGATGATCTTGGCAAGGGTAATTTCTCTAACCATTTGCTACTTGATAGTTCTTTGAGCTTTTACAAGTAGTATATTTCTGGGCTATATCTACCATATTCAAACCCAAAAGAAAAGTACTATCAATCAGCTAGGCTGTACAATAGAGAAGTGACTGTTTTTGGAATATTTTGTAGTGAGAATCTCCCTTGTTTTGCATTTTTTCTTTACATCTATAATGCTTATGAACGTGCTTGTAGAAAGGTAGTATGGCTAGAGTAGTTATGTAACAGAGTTCAAATGATTAAATGGGGCAATTAGAACACACAAAACATAAAAGATGATTGGTTGGTTGACGATTATTGATAGATAGTACGGAGGATATCAGAACCAACTTTAAGAGAGCAATAAAAAGAATACTGCATTTAAATGCTTTCTTGAGGTTGTATTCCTTTTATGGAGATATTGGGTGTTCCATGCTTTCTGATATTTGGCATAAGGTCGAGGTGATAGTTTGTGAATATTAATACTTTCATACATATTCACTCTTCGGCTGTTGGGTTTGGAAACTTGAAAAAGCAATTATCAATATTTAAAAGGGGGAAATAACATGGTAGGGATCAGATATAGGACTGACAACCATGTTCAACTATCACTGCCGTCTAAAATGCTTGAGCTAATATGATAGCTAATGGGAAGGATAAGTTCAAGTATTATTCACTCTAAACTTTCAAGTTTGAAGTAATACTATGTAGCTTCTGAAAAAAAATTATGTCATCCAGAAGAGCTTTGTGAGAAAGCTTTTGTAGAGTGATCTATTGACTCAGGTGCACCCAAATGTGCTTTTAAGATTGCAAAGTATTAATTATTCTTAATATTAAACACATTTTATTATTGTATTTTTGCTCAAAGTACCCTAAAGCATTCTGAAATTGTACCTTTTTATGCATATTCTTATCAGTGGTCATTTTTGACATACAGGTGGACATGAACTCAGCTCAAGTACAGGAAATGCTGGTGCTAGAGTAGCCTGTGGTATGCGAATTCGGTTCCTAAGAAATATTACTTTTTCTTCCATTCTACAATTCCCTTTTCAAAGTTATCTGCGTTCTCCATATTTCTTGATTGCATTTATTGTCGTTTTATTTCCAGGCATTATTGGTCTGCAAGGTTAAAATTTGTTGCCTTCGTTGCCGTTACTGTGGAAGCATTGAACCCAAGTGCTCTCTAGTGCTTCCAGGAATATTCCTAAACTCTCGTGAATGAATAAAAACACATCACTGTACCTTTTCTTCTTTTGTGACGATTAGATCTTTCACTTATCCATACTTGTCTGCTGTTTTATTAATATATTTCTGGAAATTTGGTTTCTTTTTTTTTTCTTTTTAAATCACACACACACACACACACATAAACTAGAAGCCTCACAGGTTACACGAAAGGAAAAACCATTCAGAGTGGAAACCTACTCATTGACCCTATGAGAG

mRNA sequence

TTTCACTATTGAAGTATTAACACATGGAGTCCTCTATATAAATTTCCAATAGCCCTAAACTTTCTTCATTTCTAGACTCTTCCTTCCATTCAATCTCACCTCTGCCTTCTCTTTCTTCTGTCCAAGGGGTGTTCTGAGATCACAGGAAAGATGGTGAAGGCTGTGGCTGTTCTTGGAAGTAGTGAGGGTGTTAGTGGAACTATCTTTTTCACCCAAGAAGGAGACGGTCCAACCACTGTTACGGGTAATGTTTCTGGTCTCAAGCCCGGGCTTCATGGATTCCATGTTCACGCCTTAGGTGACACAACCAATGGCTGCATGTCGACTGGGCCACATTTCAACCCTGCTGGAAAACAACATGGTGCTCCCGAGGACGAGAACCGCCATGCCGGTGATTTAGGGAACATTATCGTTGGTGAAGATGGCAAGGCTAACTTCACCATTACTGACTGCCAGATTCCTCTCTGTGGACATGAATCCATTATCGGAAGGGCTGTTGTGGTTCATGGAGACCCTGATGATCTTGGCAAGGGTGGACATGAACTCAGCTCAAGTACAGGAAATGCTGGTGCTAGAGTAGCCTGTGGCATTATTGGTCTGCAAGGTTAAAATTTGTTGCCTTCGTTGCCGTTACTGTGGAAGCATTGAACCCAAGTGCTCTCTAGTGCTTCCAGGAATATTCCTAAACTCTCGTGAATGAATAAAAACACATCACTGTACCTTTTCTTCTTTTGTGACGATTAGATCTTTCACTTATCCATACTTGTCTGCTGTTTTATTAATATATTTCTGGAAATTTGGTTTCTTTTTTTTTTCTTTTTAAATCACACACACACACACACACATAAACTAGAAGCCTCACAGGTTACACGAAAGGAAAAACCATTCAGAGTGGAAACCTACTCATTGACCCTATGAGAG

Coding sequence (CDS)

ATGGTGAAGGCTGTGGCTGTTCTTGGAAGTAGTGAGGGTGTTAGTGGAACTATCTTTTTCACCCAAGAAGGAGACGGTCCAACCACTGTTACGGGTAATGTTTCTGGTCTCAAGCCCGGGCTTCATGGATTCCATGTTCACGCCTTAGGTGACACAACCAATGGCTGCATGTCGACTGGGCCACATTTCAACCCTGCTGGAAAACAACATGGTGCTCCCGAGGACGAGAACCGCCATGCCGGTGATTTAGGGAACATTATCGTTGGTGAAGATGGCAAGGCTAACTTCACCATTACTGACTGCCAGATTCCTCTCTGTGGACATGAATCCATTATCGGAAGGGCTGTTGTGGTTCATGGAGACCCTGATGATCTTGGCAAGGGTGGACATGAACTCAGCTCAAGTACAGGAAATGCTGGTGCTAGAGTAGCCTGTGGCATTATTGGTCTGCAAGGTTAA

Protein sequence

MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHGDPDDLGKGGHELSSSTGNAGARVACGIIGLQG*

Homology

[Close]

BLAST of CSPI01G27200 vs. ExPASy Swiss-Prot
Match: Q07796 (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2)

HSP 1 Score: 284.3 bits (726), Expect = 8.4e-76
Identity = 137/152 (90.13%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGK+HGAP D+NRHAGDLGNI VGEDG A+FTITD QIPL G  S+IGRAVVVHG
Sbjct: 61  PHFNPAGKEHGAPGDDNRHAGDLGNITVGEDGTASFTITDKQIPLTGANSVIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. ExPASy Swiss-Prot
Match: P27082 (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 SV=2)

HSP 1 Score: 278.9 bits (712), Expect = 3.5e-74
Identity = 134/152 (88.16%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL SSEGVSGTIFFTQ+GD PTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PH+NPAGK+HGAPEDE RHAGDLGNI VGEDG A+FT+TD QIPL G +SIIGRAVVVH 
Sbjct: 61  PHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQIPLAGPQSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. ExPASy Swiss-Prot
Match: P23345 (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays OX=4577 GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 276.6 bits (706), Expect = 1.7e-73
Identity = 132/152 (86.84%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGV GTIFFTQEGDGPTTVTG+VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PH+NPA K+HGAPEDENRHAGDLGN+  G DG AN  +TD QIPL G  SIIGRAVVVH 
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. ExPASy Swiss-Prot
Match: Q9SQL5 (Superoxide dismutase [Cu-Zn] OS=Ananas comosus OX=4615 GN=SOD1 PE=2 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 8.7e-73
Identity = 130/152 (85.53%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGV GTI+FTQEGDGPTTVTG++SGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAG +HGAPEDE RHAGDLGN+ VGEDG  N  I D QIPL G  SIIGRAVVVH 
Sbjct: 61  PHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. ExPASy Swiss-Prot
Match: P23346 (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays OX=4577 GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 273.5 bits (698), Expect = 1.5e-72
Identity = 130/152 (85.53%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSS+GV GTIFFTQEGDGPT VTG+VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PH+NPA K+HGAPEDENRHAGDLGN+  G DG AN  +TD QIPL G  SIIGRAVVVH 
Sbjct: 61  PHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. ExPASy TrEMBL
Match: B1PE19 (Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=SOD PE=2 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.3e-83
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSSSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. ExPASy TrEMBL
Match: A0A0S2LL33 (Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103492226 PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.5e-77
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDG ANFTITD QI LCG +SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGTANFTITDNQISLCGKDSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. ExPASy TrEMBL
Match: A0A5D3CDY4 (Superoxide dismutase [Cu-Zn] OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003320 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.5e-77
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDG ANFTITD QI LCG +SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGTANFTITDNQISLCGKDSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. ExPASy TrEMBL
Match: A0A0U2DB27 (Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 3.9e-76
Identity = 141/152 (92.76%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVK VAVLGSSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKGVAVLGSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNI VGEDGKA+FTI+DCQIPL G  SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTISDCQIPLSGPNSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. ExPASy TrEMBL
Match: A0A6J1DX40 (Superoxide dismutase [Cu-Zn] OS=Momordica charantia OX=3673 GN=LOC111025346 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 138/152 (90.79%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLG+S+ VSGTIFF+QEGDGPTTVTGNVSGLK GLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGASDVVSGTIFFSQEGDGPTTVTGNVSGLKAGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNI VGEDGKA+FTITDCQIPL G  SIIGRAVVVH 
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDCQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. NCBI nr
Match: NP_001267697.1 (superoxide dismutase [Cu-Zn]-like [Cucumis sativus] >XP_011658153.1 superoxide dismutase [Cu-Zn]-like isoform X1 [Cucumis sativus] >XP_011658519.1 superoxide dismutase [Cu-Zn]-like isoform X1 [Cucumis sativus] >ACA49507.1 cytosolic superoxide dismutase [Cucumis sativus] >KGN66141.1 hypothetical protein Csa_006956 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 8.9e-83
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELSSSTGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. NCBI nr
Match: XP_038877559.1 (superoxide dismutase [Cu-Zn] [Benincasa hispida] >XP_038877560.1 superoxide dismutase [Cu-Zn] [Benincasa hispida])

HSP 1 Score: 301.2 bits (770), Expect = 5.0e-78
Identity = 145/152 (95.39%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFF+QEGDG TTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFSQEGDGSTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKA+FTITD QIPLCGH+SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKASFTITDKQIPLCGHDSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGARVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. NCBI nr
Match: XP_008450736.1 (PREDICTED: superoxide dismutase [Cu-Zn] [Cucumis melo] >XP_008450737.1 PREDICTED: superoxide dismutase [Cu-Zn] [Cucumis melo] >ALO62044.1 superoxide dismutase 3 [Cucumis melo] >TYK10187.1 superoxide dismutase [Cucumis melo var. makuwa])

HSP 1 Score: 297.4 bits (760), Expect = 7.3e-77
Identity = 145/152 (95.39%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDG ANFTITD QI LCG +SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGTANFTITDNQISLCGKDSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS STGNAGARVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLSTGNAGARVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. NCBI nr
Match: AKN08991.1 (superoxide dismutase [Luffa aegyptiaca])

HSP 1 Score: 293.9 bits (751), Expect = 8.0e-76
Identity = 141/152 (92.76%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVK VAVLGSSEGVSGTIFF+QEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKGVAVLGSSEGVSGTIFFSQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNI VGEDGKA+FTI+DCQIPL G  SIIGRAVVVHG
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTISDCQIPLSGPNSIIGRAVVVHG 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. NCBI nr
Match: XP_022158885.1 (superoxide dismutase [Cu-Zn] [Momordica charantia] >XP_022158886.1 superoxide dismutase [Cu-Zn] [Momordica charantia] >XP_022158887.1 superoxide dismutase [Cu-Zn] [Momordica charantia])

HSP 1 Score: 285.8 bits (730), Expect = 2.2e-73
Identity = 138/152 (90.79%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLG+S+ VSGTIFF+QEGDGPTTVTGNVSGLK GLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGASDVVSGTIFFSQEGDGPTTVTGNVSGLKAGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNPAGKQHGAPEDENRHAGDLGNI VGEDGKA+FTITDCQIPL G  SIIGRAVVVH 
Sbjct: 61  PHFNPAGKQHGAPEDENRHAGDLGNITVGEDGKASFTITDCQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLTTGNAGGRVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. TAIR 10
Match: AT1G08830.1 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 271.2 bits (692), Expect = 5.2e-73
Identity = 130/152 (85.53%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           M K VAVL SSEGV+GTIFFTQEGDG TTV+G VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNP GK HGAPED NRHAGDLGNI VG+DG A FTITDCQIPL G  SI+GRAVVVH 
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. TAIR 10
Match: AT1G08830.2 (copper/zinc superoxide dismutase 1 )

HSP 1 Score: 271.2 bits (692), Expect = 5.2e-73
Identity = 130/152 (85.53%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 1   MVKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTG 60
           M K VAVL SSEGV+GTIFFTQEGDG TTV+G VSGLKPGLHGFHVHALGDTTNGCMSTG
Sbjct: 1   MAKGVAVLNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHG 120
           PHFNP GK HGAPED NRHAGDLGNI VG+DG A FTITDCQIPL G  SI+GRAVVVH 
Sbjct: 61  PHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSSSTGNAGARVACGIIGLQG 153
           DPDDLGKGGHELS +TGNAG RVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSLATGNAGGRVACGIIGLQG 152

[Close]

BLAST of CSPI01G27200 vs. TAIR 10
Match: AT5G18100.1 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 206.1 bits (523), Expect = 2.1e-53
Identity = 95/150 (63.33%), Postives = 112/150 (74.67%), Query Frame = 0


Query: 2   VKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
           ++AVA++     V G + F Q+  G T VTG +SGL PG HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHGD 121
           HFNP  + HG P +E RHAGDLGNI+ G +G A   I D  IPL G  SI+GRAVVVH D
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGKGGHELSSSTGNAGARVACGIIGLQ 152
           PDDLGKGGH+LS STGNAG+RV CGIIGLQ
Sbjct: 128 PDDLGKGGHKLSKSTGNAGSRVGCGIIGLQ 157

[Close]

BLAST of CSPI01G27200 vs. TAIR 10
Match: AT2G28190.1 (copper/zinc superoxide dismutase 2 )

HSP 1 Score: 198.4 bits (503), Expect = 4.3e-51
Identity = 96/148 (64.86%), Postives = 108/148 (72.97%), Query Frame = 0


Query: 3   KAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62
           KAVAVL  +  V G +  TQ+  GPTTV   ++GL PG HGFH+H  GDTTNGC+STGPH
Sbjct: 66  KAVAVLKGTSDVEGVVTLTQDDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPH 125

Query: 63  FNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHGDP 122
           FNP    HGAPEDE RHAGDLGNI    DG A  TI D QIPL G  S++GRA VVH   
Sbjct: 126 FNPNNMTHGAPEDECRHAGDLGNINANADGVAETTIVDNQIPLTGPNSVVGRAFVVHELK 185

Query: 123 DDLGKGGHELSSSTGNAGARVACGIIGL 151
           DDLGKGGHELS +TGNAG R+ACG+IGL
Sbjct: 186 DDLGKGGHELSLTTGNAGGRLACGVIGL 213

[Close]

BLAST of CSPI01G27200 vs. TAIR 10
Match: AT5G18100.2 (copper/zinc superoxide dismutase 3 )

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-41
Identity = 76/127 (59.84%), Postives = 91/127 (71.65%), Query Frame = 0


Query: 2   VKAVAVLGSSEGVSGTIFFTQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
           ++AVA++     V G + F Q+  G T VTG +SGL PG HGFH+H+ GDTTNGC+STGP
Sbjct: 8   LRAVALIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67

Query: 62  HFNPAGKQHGAPEDENRHAGDLGNIIVGEDGKANFTITDCQIPLCGHESIIGRAVVVHGD 121
           HFNP  + HG P +E RHAGDLGNI+ G +G A   I D  IPL G  SI+GRAVVVH D
Sbjct: 68  HFNPLNRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHAD 127

Query: 122 PDDLGKG 129
           PDDLGKG
Sbjct: 128 PDDLGKG 134

The following BLAST results are available for this feature:

BLAST of CSPI01G27200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q07796	8.4e-76	90.13	Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas OX=4120 GN=SODCC PE=2 SV=2	[more]
P27082	3.5e-74	88.16	Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia OX=4092 GN=SODCC PE=2 ...	[more]
P23345	1.7e-73	86.84	Superoxide dismutase [Cu-Zn] 4A OS=Zea mays OX=4577 GN=SODCC.3 PE=2 SV=2	[more]
Q9SQL5	8.7e-73	85.53	Superoxide dismutase [Cu-Zn] OS=Ananas comosus OX=4615 GN=SOD1 PE=2 SV=1	[more]
P23346	1.5e-72	85.53	Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays OX=4577 GN=SODCC.2 PE=2 SV=2	[more]

BLAST of CSPI01G27200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
B1PE19	4.3e-83	100.00	Superoxide dismutase [Cu-Zn] OS=Cucumis sativus OX=3659 GN=SOD PE=2 SV=1	[more]
A0A0S2LL33	3.5e-77	95.39	Superoxide dismutase [Cu-Zn] OS=Cucumis melo OX=3656 GN=LOC103492226 PE=2 SV=1	[more]
A0A5D3CDY4	3.5e-77	95.39	Superoxide dismutase [Cu-Zn] OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0U2DB27	3.9e-76	92.76	Superoxide dismutase [Cu-Zn] OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]
A0A6J1DX40	1.1e-73	90.79	Superoxide dismutase [Cu-Zn] OS=Momordica charantia OX=3673 GN=LOC111025346 PE=3...	[more]

BLAST of CSPI01G27200 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001267697.1	8.9e-83	100.00	superoxide dismutase [Cu-Zn]-like [Cucumis sativus] >XP_011658153.1 superoxide d...	[more]
XP_038877559.1	5.0e-78	95.39	superoxide dismutase [Cu-Zn] [Benincasa hispida] >XP_038877560.1 superoxide dism...	[more]
XP_008450736.1	7.3e-77	95.39	PREDICTED: superoxide dismutase [Cu-Zn] [Cucumis melo] >XP_008450737.1 PREDICTED...	[more]
AKN08991.1	8.0e-76	92.76	superoxide dismutase [Luffa aegyptiaca]	[more]
XP_022158885.1	2.2e-73	90.79	superoxide dismutase [Cu-Zn] [Momordica charantia] >XP_022158886.1 superoxide di...	[more]

BLAST of CSPI01G27200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08830.1	5.2e-73	85.53	copper/zinc superoxide dismutase 1	[more]
AT1G08830.2	5.2e-73	85.53	copper/zinc superoxide dismutase 1	[more]
AT5G18100.1	2.1e-53	63.33	copper/zinc superoxide dismutase 3	[more]
AT2G28190.1	4.3e-51	64.86	copper/zinc superoxide dismutase 2	[more]
AT5G18100.2	1.1e-41	59.84	copper/zinc superoxide dismutase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001424	Superoxide dismutase, copper/zinc binding domain	PRINTS	PR00068	CUZNDISMTASE	coord: 43..65 score: 80.46 coord: 98..120 score: 58.23 coord: 123..149 score: 73.35 coord: 79..88 score: 72.37
IPR001424	Superoxide dismutase, copper/zinc binding domain	PFAM	PF00080	Sod_Cu	coord: 12..148 e-value: 6.5E-48 score: 162.4
IPR001424	Superoxide dismutase, copper/zinc binding domain	CDD	cd00305	Cu-Zn_Superoxide_Dismutase	coord: 2..145 e-value: 4.05584E-58 score: 175.527
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	GENE3D	2.60.40.200	Superoxide dismutase, copper/zinc binding domain	coord: 1..152 e-value: 3.6E-66 score: 224.1
IPR036423	Superoxide dismutase-like, copper/zinc binding domain superfamily	SUPERFAMILY	49329	Cu,Zn superoxide dismutase-like	coord: 2..150
IPR024134	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone	PANTHER	PTHR10003	SUPEROXIDE DISMUTASE CU-ZN -RELATED	coord: 1..152
None	No IPR available	PANTHER	PTHR10003:SF79	SUPEROXIDE DISMUTASE [CU-ZN] 1	coord: 1..152
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00332	SOD_CU_ZN_2	coord: 137..148
IPR018152	Superoxide dismutase, copper/zinc, binding site	PROSITE	PS00087	SOD_CU_ZN_1	coord: 43..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G27200.1	CSPI01G27200.1	mRNA
CSPI01G27200.2	CSPI01G27200.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071280	cellular response to copper ion
biological_process	GO:0071484	cellular response to light intensity
biological_process	GO:0071457	cellular response to ozone
biological_process	GO:0071472	cellular response to salt stress
biological_process	GO:0071329	cellular response to sucrose stimulus
biological_process	GO:0071493	cellular response to UV-B
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0035195	gene silencing by miRNA
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0010039	response to iron ion
biological_process	GO:0006801	superoxide metabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004784	superoxide dismutase activity
molecular_function	GO:0046872	metal ion binding