CSPI01G26020 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G26020
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S ribosomal protein L39
Location	Chr1: 21383208 .. 21384624 (+)
RNA-Seq Expression	CSPI01G26020
Synteny	CSPI01G26020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACTCCAAAAACCCTAATCTATTGTTCTTTCCCTGAGCTAACAGAGAACGGCCACTTCTTCACTTTGCTCTCTCAGGTAATCTTCCTTCTCCTTCCTCTCTGCCGTTGTCTGTCTCTTCTTCTTTTCCGGTAGGACTTCGTTTTCGTAGACTTGTGTGTTGCCATACCTTATATTGTCAGTTTGTGGAAGGATTTTTGAATTATTAGGCGAGCGAGAACGTAAGTATTGATTATTTAGAGATCGAAAATGGAAACTGTGGAACTTCTTCGCTGTTTGTCGCATTATTAGGTCAACAGTTCTATTCATTAAGGCGGTTTAGATTCTGGAATTCTTGTGTTAATTTTGGATGTATATTCCTTAATGTATGGGTTTTTTTTTTTTTTTGTGTTAATTTGGATTATGAAATGCTTATGTGAATGAAACAAATAGAATGGTCAAGTAAGTAGAATAAAGGGACTTAATTTGATTGTTCTTAATATTGTAATGTAAGTATTTGTCTGAGTTTATTGCCTGATCGGTAACTTTCGATGATATTCAAGTTTTTCTCCATAAACGGTGTTTCTGAAGCCATGATGGTATGCAGTTTACAAATATTAACTATATCTTTATTCATTTAAACTTCAAAACCATAGATGTGGTGAATCTATTGAGACTCTCGCGGACACACCAGAACAAAAATAATGATAAAGAACAGGAAATATTTGTAGAATGTGGATTTTTTGTTTTTGGGTCTGAACTTCTATGTTGAATTATTCGTTCTCTTATATTTTGTTCATTTGGTTTACATCTTGATGTTGATTCTTCCTGGGACAGGCAATTTGCTGCTGACTTGCTGTCGTTGGCCAATTCCTGAATTTTGAAGATGGTACTGTTTCTTCCTTGAAGTGCTTTTGATGTGTTCCTCCTGATAATGTTTATACGTTTGGGACTGATTATATAATTGTTAAAGTCGATTTATCATATTTAAAATAACTTCTAAACACACCTTTAATCATTCAAAGTTAACTTAATGTTTAATTTTATGCTTTTAGATGTCATTTAAAAATGTGTTTCAAAGTGATTTTATGAATGACAAAAGTGATTTTAACCATTTTAGAGTCACATTTGATTGAGTTCTGTTTTGGGAGATAGTTTCTTACAATGTGAGTTTTCTTTTATGTCTGCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGGTTGAGGACTGACAACACCATCAGGTCTTTTCAACACTCCTGTTCTGTCTTTAATCATATTAACTCTTTTGTTCTTCTCGTTTTAAATTTAGCGTCATATTTTGGGATGTATTCTTCAGGTATAATGCTAAGCGAAGGCACTGGCGCCGCACTAAGCTTGGATTT

mRNA sequence

ATGAATACTCCAAAAACCCTAATCTATTGTTCTTTCCCTGAGCTAACAGAGAACGGCCACTTCTTCACTTTGCTCTCTCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGGTTGAGGACTGACAACACCATCAGGTATAATGCTAAGCGAAGGCACTGGCGCCGCACTAAGCTTGGATTT

Coding sequence (CDS)

ATGAATACTCCAAAAACCCTAATCTATTGTTCTTTCCCTGAGCTAACAGAGAACGGCCACTTCTTCACTTTGCTCTCTCAGCCGTCTCACAAGACTTTCAGAATCAAGAAGAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGGTTGAGGACTGACAACACCATCAGGTATAATGCTAAGCGAAGGCACTGGCGCCGCACTAAGCTTGGATTT

Protein sequence

MNTPKTLIYCSFPELTENGHFFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Homology

[Close]

BLAST of CSPI01G26020 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 6.0e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 28 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CSPI01G26020 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 6.0e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 28 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CSPI01G26020 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.0e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 28 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CSPI01G26020 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-21
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 28 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          PSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CSPI01G26020 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 3.0e-21
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 28 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CSPI01G26020 vs. ExPASy TrEMBL
Match: A0A218W104 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr015227 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-21
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 24 LLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          L+ QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 32 LIGQPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 85

[Close]

BLAST of CSPI01G26020 vs. ExPASy TrEMBL
Match: W9R5P2 (60S ribosomal protein L39 OS=Morus notabilis OX=981085 GN=L484_014456 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.4e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 26 SQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          SQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 3  SQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54

[Close]

BLAST of CSPI01G26020 vs. ExPASy TrEMBL
Match: A0A5A7U961 (60S ribosomal protein L39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004350 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.0e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 25 LSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          + QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 53

[Close]

BLAST of CSPI01G26020 vs. ExPASy TrEMBL
Match: A0A2I0K803 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_014891 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.0e-21
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 4  PKTLIYCSFPELTENGHFFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRY 63
          P  +IYC  P +       +   QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRY
Sbjct: 15 PTIIIYCG-PLVHTLSPSPSSFVQPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRY 74

Query: 64 NAKRRHWRRTKLGF 78
          NAKRRHWRRTKLGF
Sbjct: 75 NAKRRHWRRTKLGF 87

[Close]

BLAST of CSPI01G26020 vs. ExPASy TrEMBL
Match: A0A368PSI7 (Uncharacterized protein (Fragment) OS=Setaria italica OX=4555 GN=SETIT_1G351900v2 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-21
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 21  FFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
           F +L +QPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 48  FASLAAQPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 104

[Close]

BLAST of CSPI01G26020 vs. NCBI nr
Match: EXB38641.1 (60S ribosomal protein L39 [Morus notabilis])

HSP 1 Score: 110.9 bits (276), Expect = 4.9e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 26 SQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          SQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 3  SQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 54

[Close]

BLAST of CSPI01G26020 vs. NCBI nr
Match: OWM65802.1 (hypothetical protein CDL15_Pgr015227 [Punica granatum])

HSP 1 Score: 110.9 bits (276), Expect = 4.9e-21
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 24 LLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          L+ QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 32 LIGQPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 85

[Close]

BLAST of CSPI01G26020 vs. NCBI nr
Match: PKI64675.1 (hypothetical protein CRG98_014891 [Punica granatum])

HSP 1 Score: 110.2 bits (274), Expect = 8.3e-21
Identity = 55/74 (74.32%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 4  PKTLIYCSFPELTENGHFFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRY 63
          P  +IYC  P +       +   QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRY
Sbjct: 15 PTIIIYCG-PLVHTLSPSPSSFVQPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRY 74

Query: 64 NAKRRHWRRTKLGF 78
          NAKRRHWRRTKLGF
Sbjct: 75 NAKRRHWRRTKLGF 87

[Close]

BLAST of CSPI01G26020 vs. NCBI nr
Match: KAA0050937.1 (60S ribosomal protein L39 [Cucumis melo var. makuwa] >KAG7022407.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma] >TYK10284.1 60S ribosomal protein L39 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 8.3e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 25 LSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          + QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MGQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 53

[Close]

BLAST of CSPI01G26020 vs. NCBI nr
Match: RCV08756.1 (hypothetical protein SETIT_1G351900v2, partial [Setaria italica])

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 0


Query: 21  FFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
           F +L +QPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 48  FASLAAQPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 104

[Close]

BLAST of CSPI01G26020 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-22
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0


Query: 28 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CSPI01G26020 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 97.1 bits (240), Expect = 6.8e-21
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 28 PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          PSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 2  PSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]

BLAST of CSPI01G26020 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 90.5 bits (223), Expect = 6.3e-19
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 35 IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 78
          IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

The following BLAST results are available for this feature:

BLAST of CSPI01G26020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6KAJ8	6.0e-22	96.00	60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P...	[more]
P51426	6.0e-22	96.00	60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P...	[more]
P51425	6.0e-22	96.00	60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1	[more]
Q5SMI4	1.7e-21	94.00	60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P...	[more]
P51424	3.0e-21	94.00	60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2	[more]

BLAST of CSPI01G26020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218W104	2.4e-21	94.44	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr015227 PE=3 SV=1	[more]
W9R5P2	2.4e-21	100.00	60S ribosomal protein L39 OS=Morus notabilis OX=981085 GN=L484_014456 PE=3 SV=1	[more]
A0A5A7U961	4.0e-21	96.23	60S ribosomal protein L39 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A2I0K803	4.0e-21	74.32	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_014891 PE=3 SV=1	[more]
A0A368PSI7	6.9e-21	89.47	Uncharacterized protein (Fragment) OS=Setaria italica OX=4555 GN=SETIT_1G351900v...	[more]

BLAST of CSPI01G26020 vs. NCBI nr


Match Name	E-value	Identity	Description
EXB38641.1	4.9e-21	100.00	60S ribosomal protein L39 [Morus notabilis]	[more]
OWM65802.1	4.9e-21	94.44	hypothetical protein CDL15_Pgr015227 [Punica granatum]	[more]
PKI64675.1	8.3e-21	74.32	hypothetical protein CRG98_014891 [Punica granatum]	[more]
KAA0050937.1	8.3e-21	96.23	60S ribosomal protein L39 [Cucumis melo var. makuwa] >KAG7022407.1 60S ribosomal...	[more]
RCV08756.1	1.4e-20	89.47	hypothetical protein SETIT_1G351900v2, partial [Setaria italica]	[more]

BLAST of CSPI01G26020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31985.1	2.1e-22	94.00	Ribosomal protein L39 family protein	[more]
AT3G02190.1	6.8e-21	90.00	Ribosomal protein L39 family protein	[more]
AT2G25210.1	6.3e-19	97.67	Ribosomal protein L39 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023626	Ribosomal protein L39e domain superfamily	GENE3D	1.10.1620.10	Ribosomal protein L39e	coord: 28..77 e-value: 3.3E-28 score: 99.4
IPR023626	Ribosomal protein L39e domain superfamily	SUPERFAMILY	48662	Ribosomal protein L39e	coord: 29..76
IPR000077	Ribosomal protein L39e	PFAM	PF00832	Ribosomal_L39	coord: 35..75 e-value: 6.2E-22 score: 76.9
None	No IPR available	PANTHER	PTHR19970:SF29	SUBFAMILY NOT NAMED	coord: 14..77
None	No IPR available	PANTHER	PTHR19970	RIBOSOMAL PROTEIN L39E	coord: 14..77
IPR020083	Ribosomal protein L39e, conserved site	PROSITE	PS00051	RIBOSOMAL_L39E	coord: 56..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G26020.1	CSPI01G26020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008061	chitin binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0003735	structural constituent of ribosome