CSPI01G25780 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G25780
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr1: 21179757 .. 21180224 (+)
RNA-Seq ExpressionCSPI01G25780
SyntenyCSPI01G25780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTTCTGAGTTGGGCCAAGTTTAAAACTTAATGAGCTACGCTTATATATATGGGTATACGTACACATATTGTTTATGTGTTTAATCATAACACAATTAATTATTAGTTGGTATGGGGTTCAACTTGATGATTCATTATTCAGACGAAGAGGATGATCAAAATTATAAGCATGAGTGCAGTTATTTAGATGAATGGCGGTACTCAATGAGGATGCGGGAGAAGAGGCAAATATTTCTGAGGAGCTATGAGTTCCAGTTGATGAGCAGAAAGAGATCAAAGAAGAAGAAGGAGAAGAGGAGGAGTGTGGGCCACAACATAAAAACAGGTCTTCTCAAAATCAAAAGAGTTATATGGGTGAGGCTCAACAAGCTCAAGCTCAACATTAATAATCACTGCTTCCTCCCTTCCCCTTCACGTATACGTATAAGACGAACAACATTTTTTCGCCTCCATATTCACTAGTATAG

mRNA sequence

CCCTTCTGAGTTGGGCCAAGTTTAAAACTTAATGAGCTACGCTTATATATATGGGTATACGTACACATATTGTTTATGTGTTTAATCATAACACAATTAATTATTAGTTGGTATGGGGTTCAACTTGATGATTCATTATTCAGACGAAGAGGATGATCAAAATTATAAGCATGAGTGCAGTTATTTAGATGAATGGCGGTACTCAATGAGGATGCGGGAGAAGAGGCAAATATTTCTGAGGAGCTATGAGTTCCAGTTGATGAGCAGAAAGAGATCAAAGAAGAAGAAGGAGAAGAGGAGGAGTGTGGGCCACAACATAAAAACAGGTCTTCTCAAAATCAAAAGAGTTATATGGGTGAGGCTCAACAAGCTCAAGCTCAACATTAATAATCACTGCTTCCTCCCTTCCCCTTCACGTATACGTATAAGACGAACAACATTTTTTCGCCTCCATATTCACTAGTATAG

Coding sequence (CDS)

ATGGGGTTCAACTTGATGATTCATTATTCAGACGAAGAGGATGATCAAAATTATAAGCATGAGTGCAGTTATTTAGATGAATGGCGGTACTCAATGAGGATGCGGGAGAAGAGGCAAATATTTCTGAGGAGCTATGAGTTCCAGTTGATGAGCAGAAAGAGATCAAAGAAGAAGAAGGAGAAGAGGAGGAGTGTGGGCCACAACATAAAAACAGGTCTTCTCAAAATCAAAAGAGTTATATGGGTGAGGCTCAACAAGCTCAAGCTCAACATTAATAATCACTGCTTCCTCCCTTCCCCTTCACGTATACGTATAAGACGAACAACATTTTTTCGCCTCCATATTCACTAG

Protein sequence

MGFNLMIHYSDEEDDQNYKHECSYLDEWRYSMRMREKRQIFLRSYEFQLMSRKRSKKKKEKRRSVGHNIKTGLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIRRTTFFRLHIH*
Homology
[Close]
BLAST of CSPI01G25780 vs. ExPASy TrEMBL
Match: A0A0A0LYW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560840 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 8.2e-58
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MGFNLMIHYSDEEDDQNYKHECSYLDEWRYSMRMREKRQIFLRSYEFQLMSRKRSKKKKE 60
           MGFNLMIHYSD+EDDQNYKHECSYLDEWRYSMRMREKRQIFLRSYEFQLMSRKRSKKKKE
Sbjct: 1   MGFNLMIHYSDDEDDQNYKHECSYLDEWRYSMRMREKRQIFLRSYEFQLMSRKRSKKKKE 60

Query: 61  KRRSVGHNIKTGLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIRRTTFFRLHIH 117
           KRRSVGHNIKTGLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIRRTTFFRLHIH
Sbjct: 61  KRRSVGHNIKTGLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIRRTTFFRLHIH 116

[Close]
BLAST of CSPI01G25780 vs. NCBI nr
Match: KGN66002.1 (hypothetical protein Csa_007656 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 0 

Query: 1   MGFNLMIHYSDEEDDQNYKHECSYLDEWRYSMRMREKRQIFLRSYEFQLMSRKRSKKKKE 60
           MGFNLMIHYSD+EDDQNYKHECSYLDEWRYSMRMREKRQIFLRSYEFQLMSRKRSKKKKE
Sbjct: 1   MGFNLMIHYSDDEDDQNYKHECSYLDEWRYSMRMREKRQIFLRSYEFQLMSRKRSKKKKE 60

Query: 61  KRRSVGHNIKTGLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIRRTTFFRLHIH 117
           KRRSVGHNIKTGLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIRRTTFFRLHIH
Sbjct: 61  KRRSVGHNIKTGLLKIKRVIWVRLNKLKLNINNHCFLPSPSRIRIRRTTFFRLHIH 116

The following BLAST results are available for this feature:
BLAST of CSPI01G25780 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI01G25780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYW08.2e-5899.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G560840 PE=4 SV=1[more]
BLAST of CSPI01G25780 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66002.11.7e-5799.14hypothetical protein Csa_007656 [Cucumis sativus][more]
BLAST of CSPI01G25780 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G25780.1CSPI01G25780.1mRNA