CSPI01G22340 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G22340
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 17888172 .. 17888971 (+)
RNA-Seq Expression	CSPI01G22340
Synteny	CSPI01G22340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAATCAAACCTAAATTAAAATTTATTCATTAATTAACTTTAAGATAAACATAGAAACCAACAAAGCTTCGAGGCATTCTATCCTTAAAAACCAAAGCTTTGAGGTTAAGTACAATCCACACACCAAATTCATCACTAAAATCACTCTTTTTTTTTTTTCTCTCTTAATTTTATCATCTTGCAATGTAATAGAAAAAACATCTATCTCACCCCAATTTTAAAGCTTAAGAGAACAGTGAACACACAACCAATTTGAACATAGTTCAACTCGATTATCATAGCATTATAGTCGGAAATTCAAATCTCGTACTCAGAAAAAACACACCAGAAAATATTTTTAAGAAAGATGAAGAATTTATTACAAAAGTCTATAGCTCTTGCAAAAAATGAGCAAGAACACACAGCAGAAACCCCATATCTCTCCCCCAGCAGAGATCCCATATCTCTCGCCCACCAATTAAAAGGAGCTTCCATGAAAAATAAGAGGAGGTGGCGGTCGTGCGGGAGTAGGCGGAGGAACATCGACGGTTCTAGCACCGGTGACGAGGTCTCGGATGAGTCTGCAGAGTATTTCTTCAGCCATGAAAGCCGCCAAAGCTGCGGAATTAACAAGGCTCTCAAAAATTTGAGCTTTGATACGACCGCGTTTTGGTGGAAGGGTAGAGATCTTCCCCTTTGAAGATGTGGAAGAAGCTGCTGCCATGGCTGAAGAAGAAGTAAAAAGAGAAGAGCTCGAGAGAAGAAGAAGAAGAAGAGAAGGAGGGAAGAATAGAAGGACTCCAAAGATGTGGGGACTTATA

mRNA sequence

GGAATCAAACCTAAATTAAAATTTATTCATTAATTAACTTTAAGATAAACATAGAAACCAACAAAGCTTCGAGGCATTCTATCCTTAAAAACCAAAGCTTTGAGGTTAAGTACAATCCACACACCAAATTCATCACTAAAATCACTCTTTTTTTTTTTTCTCTCTTAATTTTATCATCTTGCAATGTAATAGAAAAAACATCTATCTCACCCCAATTTTAAAGCTTAAGAGAACAGTGAACACACAACCAATTTGAACATAGTTCAACTCGATTATCATAGCATTATAGTCGGAAATTCAAATCTCGTACTCAGAAAAAACACACCAGAAAATATTTTTAAGAAAGATGAAGAATTTATTACAAAAGTCTATAGCTCTTGCAAAAAATGAGCAAGAACACACAGCAGAAACCCCATATCTCTCCCCCAGCAGAGATCCCATATCTCTCGCCCACCAATTAAAAGGAGCTTCCATGAAAAATAAGAGGAGGTGGCGGTCGTGCGGGAGTAGGCGGAGGAACATCGACGGTTCTAGCACCGGTGACGAGGTCTCGGATGAGTCTGCAGAGTATTTCTTCAGCCATGAAAGCCGCCAAAGCTGCGGAATTAACAAGGCTCTCAAAAATTTGAGCTTTGATACGACCGCGTTTTGGTGGAAGGGTAGAGATCTTCCCCTTTGAAGATGTGGAAGAAGCTGCTGCCATGGCTGAAGAAGAAGTAAAAAGAGAAGAGCTCGAGAGAAGAAGAAGAAGAAGAGAAGGAGGGAAGAATAGAAGGACTCCAAAGATGTGGGGACTTATA

Coding sequence (CDS)

ATGAAGAATTTATTACAAAAGTCTATAGCTCTTGCAAAAAATGAGCAAGAACACACAGCAGAAACCCCATATCTCTCCCCCAGCAGAGATCCCATATCTCTCGCCCACCAATTAAAAGGAGCTTCCATGAAAAATAAGAGGAGGTGGCGGTCGTGCGGGAGTAGGCGGAGGAACATCGACGGTTCTAGCACCGGTGACGAGGTCTCGGATGAGTCTGCAGAGTATTTCTTCAGCCATGAAAGCCGCCAAAGCTGCGGAATTAACAAGGCTCTCAAAAATTTGAGCTTTGATACGACCGCGTTTTGGTGGAAGGGTAGAGATCTTCCCCTTTGA

Protein sequence

MKNLLQKSIALAKNEQEHTAETPYLSPSRDPISLAHQLKGASMKNKRRWRSCGSRRRNIDGSSTGDEVSDESAEYFFSHESRQSCGINKALKNLSFDTTAFWWKGRDLPL*

Homology

[Close]

BLAST of CSPI01G22340 vs. ExPASy TrEMBL
Match: A0A0A0LV64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479100 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 7.2e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MKNLLQKSIALAKNEQEHTAETPYLSPSRDPISLAHQLKGASMKNKRRWRSCGSRRRNID 60
           MKNLLQKSIALAKNEQEHTAETPYLSPSRDPISLAHQLKGASMKNKRRWRSCGSRRRNID
Sbjct: 1   MKNLLQKSIALAKNEQEHTAETPYLSPSRDPISLAHQLKGASMKNKRRWRSCGSRRRNID 60

Query: 61  GSSTGDEVSDESAEYFFSHESRQSCGINKALKNLSFDTTAFWWKGRDLPL 111
           GSSTGDEVSDESAEYFFSHESRQSCGINKALKNLSFDTTAFWWKGRDLPL
Sbjct: 61  GSSTGDEVSDESAEYFFSHESRQSCGINKALKNLSFDTTAFWWKGRDLPL 110

[Close]

BLAST of CSPI01G22340 vs. NCBI nr
Match: KAE8652729.1 (hypothetical protein Csa_014074 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 4.7e-25
Identity = 60/68 (88.24%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 43  MKNKRRWRSCGSRRRNIDGSSTGDEVSDESAEYFFSHESRQSCGINKALKNLSFDTTAFW 102
           MKNK RWR CG RRR+IDGSS GDEVSD SAEYFFSHESRQSCGINKALKNLSFDTTA W
Sbjct: 1   MKNK-RWRWCGIRRRSIDGSSAGDEVSDGSAEYFFSHESRQSCGINKALKNLSFDTTALW 60

Query: 103 WKGRDLPL 111
           WKG+DLPL
Sbjct: 61  WKGKDLPL 67

The following BLAST results are available for this feature:

BLAST of CSPI01G22340 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G22340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV64	7.2e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G479100 PE=4 SV=1	[more]

BLAST of CSPI01G22340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652729.1	4.7e-25	88.24	hypothetical protein Csa_014074 [Cucumis sativus]	[more]

BLAST of CSPI01G22340 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G22340.1	CSPI01G22340.1	mRNA