CSPI01G21000 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G21000
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCACTA en-spm transposon protein
LocationChr1: 16532773 .. 16533427 (-)
RNA-Seq ExpressionCSPI01G21000
SyntenyCSPI01G21000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACAGAATTCTGAGGTGCGCTCTTATAGTGGTTGTATAGTTAATGGAGTACGATTTCATACTACACAACTTGATAATCGTCGAACAACCCAAAATAGTAGAATTTTTGTGCTTGGAGAAAGTGAAGGTGATCAATATAATTTCTATGGTGTCTTAGACGAGGTGTTAGACTTTCAATATGTAAGAAGAAGACGTGTTATGATGTTGAAGTGTAGATGGTTTGACACTGACCCTAGAAAAAAAAAGATCGCACATAGATCTAGAGTTGACATCAATTAATACATCTCATTATTGGTATGTCGATAACCATTTCATTCTTGCCAATCAATTAAGCACAACAAGTTTTTTTTACCTCAAGGACCCTAAATATGGTATAAACTGGATAGTTGTTCAAATAGTTCAAAATAAATGCTTGTGGGATGTGTCGGAAGTTGGTGATATTGAGAATGACCAACTTGATGTAGCGGAAGTTGGTGGAATTGGAGTCGATGAATCAATTGATGATACCACATTCTGTAGAAATGACATTGAGCCTACACTCCTGGGACAACAATTACAGTCTCAAGACAACAACGTTGGATTCATAAATGATGAATCAGAAGATACACGATCATCTCCTGACATTAGCTCAAGATCTGATGAACTGCTTGAT

mRNA sequence

ATGGGACAGAATTCTGAGGTGCGCTCTTATAGTGGTTGTATAGTTAATGGAGTACGATTTCATACTACACAACTTGATAATCGTCGAACAACCCAAAATAGTAGAATTTTTGTGCTTGGAGAAAGTGAAGGTGATCAATATAATTTCTATGGTGTCTTAGACGAGGACCCTAAATATGGTATAAACTGGATAGTTGTTCAAATAGTTCAAAATAAATGCTTGTGGGATGTGTCGGAAGTTGGTGATATTGAGAATGACCAACTTGATGTAGCGGAAGTTGGTGGAATTGGAGTCGATGAATCAATTGATGATACCACATTCTGTAGAAATGACATTGAGCCTACACTCCTGGGACAACAATTACAGTCTCAAGACAACAACGTTGGATTCATAAATGATGAATCAGAAGATACACGATCATCTCCTGACATTAGCTCAAGATCTGATGAACTGCTTGAT

Coding sequence (CDS)

ATGGGACAGAATTCTGAGGTGCGCTCTTATAGTGGTTGTATAGTTAATGGAGTACGATTTCATACTACACAACTTGATAATCGTCGAACAACCCAAAATAGTAGAATTTTTGTGCTTGGAGAAAGTGAAGGTGATCAATATAATTTCTATGGTGTCTTAGACGAGGACCCTAAATATGGTATAAACTGGATAGTTGTTCAAATAGTTCAAAATAAATGCTTGTGGGATGTGTCGGAAGTTGGTGATATTGAGAATGACCAACTTGATGTAGCGGAAGTTGGTGGAATTGGAGTCGATGAATCAATTGATGATACCACATTCTGTAGAAATGACATTGAGCCTACACTCCTGGGACAACAATTACAGTCTCAAGACAACAACGTTGGATTCATAAATGATGAATCAGAAGATACACGATCATCTCCTGACATTAGCTCAAGATCTGATGAACTGCTTGAT

Protein sequence

MGQNSEVRSYSGCIVNGVRFHTTQLDNRRTTQNSRIFVLGESEGDQYNFYGVLDEDPKYGINWIVVQIVQNKCLWDVSEVGDIENDQLDVAEVGGIGVDESIDDTTFCRNDIEPTLLGQQLQSQDNNVGFINDESEDTRSSPDISSRSDELLD
Homology
BLAST of CSPI01G21000 vs. ExPASy TrEMBL
Match: A0A5D3D342 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001130 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 77/159 (48.43%), Postives = 103/159 (64.78%), Query Frame = 0

Query: 1   MGQNSEVRSYSGCIVNGVRFHTTQLDNRRTTQNSRIFVLGESE----GDQYNFYGVLDE- 60
           MG + +VR Y+GCIV G+RFHT +LD+RRTTQNS I V+GES+    GD  NFYGVLDE 
Sbjct: 177 MGPSFDVRCYNGCIVGGIRFHTIELDSRRTTQNSGIMVIGESDASGTGDN-NFYGVLDEV 236

Query: 61  ----------DPKYGINWIVVQIVQNKCLWDVSEVGDIENDQLDVAE-VGGIGVDESIDD 120
                     DPK G NW VVQ++QNK +WDV EV D+END +++ E V    VD+ I+D
Sbjct: 237 LHHIKFFYVDDPKNGSNWKVVQVIQNKRIWDVPEVEDVENDHINILEVVVSHQVDDHIED 296

Query: 121 TTFCRNDIEPTLLGQQLQSQDNNVGFINDESEDTRSSPD 144
            T CRND++PT++ + +     +  FI+D  E    + D
Sbjct: 297 DTLCRNDVDPTIVERPVVRHVTD-NFIDDVDEHLSHASD 333

BLAST of CSPI01G21000 vs. ExPASy TrEMBL
Match: A0A5D3BK73 (Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G001010 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.6e-29
Identity = 71/147 (48.30%), Postives = 100/147 (68.03%), Query Frame = 0

Query: 1   MGQNSEVRSYSGCIVNGVRFHTTQLDNRRTTQNSRIFVLGESEGDQ---YNFYGVLDEDP 60
           MGQ+ +VR Y+GCIV GVRFHT +LD+RRTTQNSRI ++G+S+  +    NFY    +DP
Sbjct: 333 MGQSFDVRCYNGCIVGGVRFHTIELDSRRTTQNSRIMIIGKSDASETSDNNFY----DDP 392

Query: 61  KYGINWIVVQIVQNKCLWDVSEVGDIENDQLDVAE-VGGIGVDESIDDTTFCRNDIEPTL 120
           K GINW VVQ++QNK +WDV EV D++ND + + E V    VD+ I+D T CRND++PT+
Sbjct: 393 KNGINWKVVQVIQNKRIWDVPEVEDVQNDHISILEVVVSHQVDDHIEDDTLCRNDVDPTI 452

Query: 121 LGQQLQSQDNNVGFINDESEDTRSSPD 144
           + + +     +  FI+D  E    + D
Sbjct: 453 IERPILRHVTD-DFIDDVDEHLSHASD 474

BLAST of CSPI01G21000 vs. ExPASy TrEMBL
Match: A0A5A7SV41 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00460 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 71/148 (47.97%), Postives = 91/148 (61.49%), Query Frame = 0

Query: 1   MGQNSEVRSYSGCIVNGVRFHTTQLDNRRTTQNSRIFVLGE---SEGDQYNFYGVLDE-- 60
           MG +  VR Y+GCIV GVRFHT +LD+RRTTQNS I V+GE   SE  + NFYGVLDE  
Sbjct: 426 MGPSFNVRCYNGCIVGGVRFHTIELDSRRTTQNSGIMVIGESDASETSENNFYGVLDEVL 485

Query: 61  -------------------------DPKYGINWIVVQIVQNKCLWDVSEVGDIENDQLDV 118
                                    DPK G NW VVQ++QNKC+WDV EV D++ND +++
Sbjct: 486 HVQYPSGRNVWLFKCRWYDTDINKNDPKNGSNWKVVQVIQNKCIWDVPEVEDVQNDHINI 545

BLAST of CSPI01G21000 vs. ExPASy TrEMBL
Match: A0A5A7SVV9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001050 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.0e-28
Identity = 81/182 (44.51%), Postives = 107/182 (58.79%), Query Frame = 0

Query: 1    MGQNSEVRSYSGCIVNGVRFHTTQLDNRRTTQNSRIFVLGESE----GDQYNFYGVLDE- 60
            MG + +VR Y+GCIV GVRFHT +LD+RRTTQNS I V+GES+    GD  NFYGVLDE 
Sbjct: 1637 MGPSFDVRCYNGCIVGGVRFHTIELDSRRTTQNSGITVIGESDASGTGDN-NFYGVLDEV 1696

Query: 61   ------------------------DPKYGINWIVVQIVQNKCLWDVSEVGDIENDQLDVA 120
                                    DPK G NW VVQ++QNK +WDV EV D++ND +++ 
Sbjct: 1697 LHVQYPLGRNVWLFKCQWYDTDVDDPKNGSNWKVVQVIQNKRIWDVPEVEDVQNDHINIV 1756

Query: 121  E-VGGIGVDESIDDTTFCRNDIEPTLLGQQLQSQDNNVGFINDESEDTRSSPDISSRSDE 153
            E V    VD+ I+D T CRND++PT++ + +      VG + D+  D      +S  SDE
Sbjct: 1757 EVVVSHQVDDHIEDDTLCRNDVDPTIVERPV------VGHVTDDFID-NVDEHLSHASDE 1810

BLAST of CSPI01G21000 vs. ExPASy TrEMBL
Match: A0A5D3BNX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00990 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 69/141 (48.94%), Postives = 97/141 (68.79%), Query Frame = 0

Query: 1   MGQNSEVRSYSGCIVNGVRFHTTQLDNRRTTQNSRIFVLGESEGD---QYNFYGVLDE-D 60
           MG + +VR Y+GCIV+G+RFHT +LD+RRTTQNS + V+GES+       NFYG+LDE  
Sbjct: 157 MGPSFDVRCYNGCIVSGLRFHTVELDSRRTTQNSGVMVIGESDASGTGNNNFYGILDEVY 216

Query: 61  PKYGINWIVVQIVQNKCLWDVSEVGDIENDQLDVAE-VGGIGVDESIDDTTFCRNDIEPT 120
           PK G NW VVQ+VQNK +WD+ EV D++ND ++V E V    VD+ I+D T CR D++P 
Sbjct: 217 PKNGSNWKVVQVVQNKRIWDMPEVEDVQNDHINVLESVVSHQVDDHIEDDTLCRTDVDPI 276

Query: 121 LLGQQLQSQDNNVGFINDESE 137
           ++ + +  +     FI+D  E
Sbjct: 277 IVERPI-VRHVTYDFIDDVDE 296

BLAST of CSPI01G21000 vs. NCBI nr
Match: KAA0046643.1 (hypothetical protein E6C27_scaffold427G00020 [Cucumis melo var. makuwa] >TYK18180.1 hypothetical protein E5676_scaffold411G001130 [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 2.5e-29
Identity = 77/159 (48.43%), Postives = 103/159 (64.78%), Query Frame = 0

Query: 1   MGQNSEVRSYSGCIVNGVRFHTTQLDNRRTTQNSRIFVLGESE----GDQYNFYGVLDE- 60
           MG + +VR Y+GCIV G+RFHT +LD+RRTTQNS I V+GES+    GD  NFYGVLDE 
Sbjct: 177 MGPSFDVRCYNGCIVGGIRFHTIELDSRRTTQNSGIMVIGESDASGTGDN-NFYGVLDEV 236

Query: 61  ----------DPKYGINWIVVQIVQNKCLWDVSEVGDIENDQLDVAE-VGGIGVDESIDD 120
                     DPK G NW VVQ++QNK +WDV EV D+END +++ E V    VD+ I+D
Sbjct: 237 LHHIKFFYVDDPKNGSNWKVVQVIQNKRIWDVPEVEDVENDHINILEVVVSHQVDDHIED 296

Query: 121 TTFCRNDIEPTLLGQQLQSQDNNVGFINDESEDTRSSPD 144
            T CRND++PT++ + +     +  FI+D  E    + D
Sbjct: 297 DTLCRNDVDPTIVERPVVRHVTD-NFIDDVDEHLSHASD 333

BLAST of CSPI01G21000 vs. NCBI nr
Match: TYJ99703.1 (putative transposase [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 7.4e-29
Identity = 71/147 (48.30%), Postives = 100/147 (68.03%), Query Frame = 0

Query: 1   MGQNSEVRSYSGCIVNGVRFHTTQLDNRRTTQNSRIFVLGESEGDQ---YNFYGVLDEDP 60
           MGQ+ +VR Y+GCIV GVRFHT +LD+RRTTQNSRI ++G+S+  +    NFY    +DP
Sbjct: 333 MGQSFDVRCYNGCIVGGVRFHTIELDSRRTTQNSRIMIIGKSDASETSDNNFY----DDP 392

Query: 61  KYGINWIVVQIVQNKCLWDVSEVGDIENDQLDVAE-VGGIGVDESIDDTTFCRNDIEPTL 120
           K GINW VVQ++QNK +WDV EV D++ND + + E V    VD+ I+D T CRND++PT+
Sbjct: 393 KNGINWKVVQVIQNKRIWDVPEVEDVQNDHISILEVVVSHQVDDHIEDDTLCRNDVDPTI 452

Query: 121 LGQQLQSQDNNVGFINDESEDTRSSPD 144
           + + +     +  FI+D  E    + D
Sbjct: 453 IERPILRHVTD-DFIDDVDEHLSHASD 474

BLAST of CSPI01G21000 vs. NCBI nr
Match: KAA0033025.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK03442.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 3.7e-28
Identity = 71/148 (47.97%), Postives = 91/148 (61.49%), Query Frame = 0

Query: 1   MGQNSEVRSYSGCIVNGVRFHTTQLDNRRTTQNSRIFVLGE---SEGDQYNFYGVLDE-- 60
           MG +  VR Y+GCIV GVRFHT +LD+RRTTQNS I V+GE   SE  + NFYGVLDE  
Sbjct: 426 MGPSFNVRCYNGCIVGGVRFHTIELDSRRTTQNSGIMVIGESDASETSENNFYGVLDEVL 485

Query: 61  -------------------------DPKYGINWIVVQIVQNKCLWDVSEVGDIENDQLDV 118
                                    DPK G NW VVQ++QNKC+WDV EV D++ND +++
Sbjct: 486 HVQYPSGRNVWLFKCRWYDTDINKNDPKNGSNWKVVQVIQNKCIWDVPEVEDVQNDHINI 545

BLAST of CSPI01G21000 vs. NCBI nr
Match: KAA0033295.1 (hypothetical protein E6C27_scaffold845G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 6.2e-28
Identity = 81/182 (44.51%), Postives = 107/182 (58.79%), Query Frame = 0

Query: 1    MGQNSEVRSYSGCIVNGVRFHTTQLDNRRTTQNSRIFVLGESE----GDQYNFYGVLDE- 60
            MG + +VR Y+GCIV GVRFHT +LD+RRTTQNS I V+GES+    GD  NFYGVLDE 
Sbjct: 1637 MGPSFDVRCYNGCIVGGVRFHTIELDSRRTTQNSGITVIGESDASGTGDN-NFYGVLDEV 1696

Query: 61   ------------------------DPKYGINWIVVQIVQNKCLWDVSEVGDIENDQLDVA 120
                                    DPK G NW VVQ++QNK +WDV EV D++ND +++ 
Sbjct: 1697 LHVQYPLGRNVWLFKCQWYDTDVDDPKNGSNWKVVQVIQNKRIWDVPEVEDVQNDHINIV 1756

Query: 121  E-VGGIGVDESIDDTTFCRNDIEPTLLGQQLQSQDNNVGFINDESEDTRSSPDISSRSDE 153
            E V    VD+ I+D T CRND++PT++ + +      VG + D+  D      +S  SDE
Sbjct: 1757 EVVVSHQVDDHIEDDTLCRNDVDPTIVERPV------VGHVTDDFID-NVDEHLSHASDE 1810

BLAST of CSPI01G21000 vs. NCBI nr
Match: TYK01403.1 (uncharacterized protein E5676_scaffold29G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-27
Identity = 69/141 (48.94%), Postives = 97/141 (68.79%), Query Frame = 0

Query: 1   MGQNSEVRSYSGCIVNGVRFHTTQLDNRRTTQNSRIFVLGESEGD---QYNFYGVLDE-D 60
           MG + +VR Y+GCIV+G+RFHT +LD+RRTTQNS + V+GES+       NFYG+LDE  
Sbjct: 157 MGPSFDVRCYNGCIVSGLRFHTVELDSRRTTQNSGVMVIGESDASGTGNNNFYGILDEVY 216

Query: 61  PKYGINWIVVQIVQNKCLWDVSEVGDIENDQLDVAE-VGGIGVDESIDDTTFCRNDIEPT 120
           PK G NW VVQ+VQNK +WD+ EV D++ND ++V E V    VD+ I+D T CR D++P 
Sbjct: 217 PKNGSNWKVVQVVQNKRIWDMPEVEDVQNDHINVLESVVSHQVDDHIEDDTLCRTDVDPI 276

Query: 121 LLGQQLQSQDNNVGFINDESE 137
           ++ + +  +     FI+D  E
Sbjct: 277 IVERPI-VRHVTYDFIDDVDE 296

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D3421.2e-2948.43DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BK733.6e-2948.30Putative transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562... [more]
A0A5A7SV411.8e-2847.97CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7SVV93.0e-2844.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BNX21.1e-2748.94Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0046643.12.5e-2948.43hypothetical protein E6C27_scaffold427G00020 [Cucumis melo var. makuwa] >TYK1818... [more]
TYJ99703.17.4e-2948.30putative transposase [Cucumis melo var. makuwa][more]
KAA0033025.13.7e-2847.97CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK03442.1 CACTA en-... [more]
KAA0033295.16.2e-2844.51hypothetical protein E6C27_scaffold845G001050 [Cucumis melo var. makuwa][more]
TYK01403.12.4e-2748.94uncharacterized protein E5676_scaffold29G00990 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..153
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G21000.1CSPI01G21000.1mRNA