CSPI01G17770 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G17770
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr1: 13357024 .. 13357317 (-)
RNA-Seq ExpressionCSPI01G17770
SyntenyCSPI01G17770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAATGAAGAAGTAGGGAAGAAAATAGAGAAAGTGGGTGAAGAAGAAGAAGAGGCAAGGACAAAGAAGAAAGAGAAAAAGAAGAGAAATAGAAAGAGAAAAGAGAAATTGATGGGAATTGAGGAAGAGAAAGGGGGTGAAGGTTCCTGGTTTCCTGTTTTCTCTGTGGAAGCTCTGACCAAGCCAACTAAAACCCAAAAAAGCCCACATAACTCGGTGAAAAAAATTGTTCTTTTCAGAGACAGTGATGAAGATGGGGGGATTTTTTGGGGGTTGCAGAAGGGCAATTGA

mRNA sequence

ATGGGTAATGAAGAAGTAGGGAAGAAAATAGAGAAAGTGGGTGAAGAAGAAGAAGAGGCAAGGACAAAGAAGAAAGAGAAAAAGAAGAGAAATAGAAAGAGAAAAGAGAAATTGATGGGAATTGAGGAAGAGAAAGGGGGTGAAGGTTCCTGGTTTCCTGTTTTCTCTGTGGAAGCTCTGACCAAGCCAACTAAAACCCAAAAAAGCCCACATAACTCGGTGAAAAAAATTGTTCTTTTCAGAGACAGTGATGAAGATGGGGGGATTTTTTGGGGGTTGCAGAAGGGCAATTGA

Coding sequence (CDS)

ATGGGTAATGAAGAAGTAGGGAAGAAAATAGAGAAAGTGGGTGAAGAAGAAGAAGAGGCAAGGACAAAGAAGAAAGAGAAAAAGAAGAGAAATAGAAAGAGAAAAGAGAAATTGATGGGAATTGAGGAAGAGAAAGGGGGTGAAGGTTCCTGGTTTCCTGTTTTCTCTGTGGAAGCTCTGACCAAGCCAACTAAAACCCAAAAAAGCCCACATAACTCGGTGAAAAAAATTGTTCTTTTCAGAGACAGTGATGAAGATGGGGGGATTTTTTGGGGGTTGCAGAAGGGCAATTGA

Protein sequence

MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEALTKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN*
Homology
[Close]
BLAST of CSPI01G17770 vs. ExPASy TrEMBL
Match: A0A0A0LTQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256770 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.6e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60
          MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL
Sbjct: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60

Query: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 98
          TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN
Sbjct: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 97

[Close]
BLAST of CSPI01G17770 vs. NCBI nr
Match: KGN65168.1 (hypothetical protein Csa_019526 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 2.0e-43
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60
          MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL
Sbjct: 1  MGNEEVGKKIEKVGEEEEEARTKKKEKKKRNRKRKEKLMGIEEEKGGEGSWFPVFSVEAL 60

Query: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 98
          TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN
Sbjct: 61 TKPTKTQKSPHNSVKKIVLFRDSDEDGGIFWGLQKGN 97

The following BLAST results are available for this feature:
BLAST of CSPI01G17770 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI01G17770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTQ79.6e-44100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256770 PE=4 SV=1[more]
BLAST of CSPI01G17770 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65168.12.0e-43100.00hypothetical protein Csa_019526 [Cucumis sativus][more]
BLAST of CSPI01G17770 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 10..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G17770.1CSPI01G17770.1mRNA