CSPI01G17020 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G17020
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr1: 12839587 .. 12839916 (+)
RNA-Seq Expression	CSPI01G17020
Synteny	CSPI01G17020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACATCAGCAATAACCAAGTTACCACTAGTTCTCCTAGTGTGCATTGCCATTTTAGCATCATCCGTAACGGCTCGTCCAACAGCAGCAGCAGCAACACCCCCATCGTTGGAAGATTTCTCTTTGTTTCCTTGCATATCATTCGTTCCTAAGGCAACAATATGTGTGATTGATGTGCTTAAAAATGCAGTTTCTCCTCATCCTTCATGTTGTGAAGCCATCTCTAAACTTCATGATTGTTCGTCCCAATTTCTCAAAGACATTTCCTCCGGTGATATGATTTTGGTTAAGAGCATTTGTGCTTCATGGGGAGTTTCTATTTCTTAG

mRNA sequence

ATGGCAACATCAGCAATAACCAAGTTACCACTAGTTCTCCTAGTGTGCATTGCCATTTTAGCATCATCCGTAACGGCTCGTCCAACAGCAGCAGCAGCAACACCCCCATCGTTGGAAGATTTCTCTTTGTTTCCTTGCATATCATTCGTTCCTAAGGCAACAATATGTGTGATTGATGTGCTTAAAAATGCAGTTTCTCCTCATCCTTCATGTTGTGAAGCCATCTCTAAACTTCATGATTGTTCGTCCCAATTTCTCAAAGACATTTCCTCCGGTGATATGATTTTGGTTAAGAGCATTTGTGCTTCATGGGGAGTTTCTATTTCTTAG

Coding sequence (CDS)

ATGGCAACATCAGCAATAACCAAGTTACCACTAGTTCTCCTAGTGTGCATTGCCATTTTAGCATCATCCGTAACGGCTCGTCCAACAGCAGCAGCAGCAACACCCCCATCGTTGGAAGATTTCTCTTTGTTTCCTTGCATATCATTCGTTCCTAAGGCAACAATATGTGTGATTGATGTGCTTAAAAATGCAGTTTCTCCTCATCCTTCATGTTGTGAAGCCATCTCTAAACTTCATGATTGTTCGTCCCAATTTCTCAAAGACATTTCCTCCGGTGATATGATTTTGGTTAAGAGCATTTGTGCTTCATGGGGAGTTTCTATTTCTTAG

Protein sequence

MATSAITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDVLKNAVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS*

Homology

[Close]

BLAST of CSPI01G17020 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.3e-44
Identity = 98/109 (89.91%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1   MATSAITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDV 60
           MATSAITKLPLVLLVCIAILASSVTARPT  AA  P+ EDFSLFPCISFVPKAT CVIDV
Sbjct: 1   MATSAITKLPLVLLVCIAILASSVTARPTIVAAATPTSEDFSLFPCISFVPKATKCVIDV 60

Query: 61  LKNAVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS 110
           LKNAV+PHPSCCEAIS+LHDCSSQFLKDI S DMILVKSICASWGVSIS
Sbjct: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of CSPI01G17020 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.5e-42
Identity = 95/109 (87.16%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MATSAITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDV 60
           MATSAITKLPLVL VCIAILASSVTA PT  AA  P+ EDFSLFPCISFVPKAT CVIDV
Sbjct: 1   MATSAITKLPLVLRVCIAILASSVTACPTIVAAATPTSEDFSLFPCISFVPKATKCVIDV 60

Query: 61  LKNAVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS 110
           LKN V+PHPSCCEAI++LHDCSSQFLKDI SGDMILVKSICASWGVSIS
Sbjct: 61  LKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

[Close]

BLAST of CSPI01G17020 vs. ExPASy TrEMBL
Match: A0A5A7U2D8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00440 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.5e-41
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MATSAITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDV 60
           MATSAITKLPL+LLVCIAILASSVTARPT  AA  P  +DFSLFPCISFVP AT  VIDV
Sbjct: 1   MATSAITKLPLILLVCIAILASSVTARPTIVAAATPISKDFSLFPCISFVPMATKRVIDV 60

Query: 61  LKNAVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS 110
           LKNAV+PHPSCCEAIS+LHDCSSQFLKDI S DMILVKSICASWGVSIS
Sbjct: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSIS 109

[Close]

BLAST of CSPI01G17020 vs. ExPASy TrEMBL
Match: A0A5D3CEQ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00180 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.0e-33
Identity = 82/106 (77.36%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 4   SAITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDVLKN 63
           ++ TKLPL LL CI ILASSV ARP   AA  P + D SLFPC SFVPKAT CVIDVLKN
Sbjct: 3   ASFTKLPLALLFCIFILASSVMARPVTVAAAAP-IGDISLFPCKSFVPKATECVIDVLKN 62

Query: 64  AVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS 110
           AV+PHPSCC+AIS+LHDCSSQFLKDI S DMILVKSICA WGVSIS
Sbjct: 63  AVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

[Close]

BLAST of CSPI01G17020 vs. ExPASy TrEMBL
Match: A0A5A7U8Y3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00460 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.7e-33
Identity = 82/106 (77.36%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 4   SAITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDVLKN 63
           ++ TKLPL LL CI ILASSV ARP   AA  P   D SLFPC SFVPKAT CVIDVLKN
Sbjct: 3   ASFTKLPLALLFCIFILASSVMARPVTVAAAAPE-GDISLFPCKSFVPKATECVIDVLKN 62

Query: 64  AVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS 110
           AV+PHPSCC+AIS+LHDCSSQFLKDI S DMILVKSICA WGVSIS
Sbjct: 63  AVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

[Close]

BLAST of CSPI01G17020 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 98/109 (89.91%), Postives = 101/109 (92.66%), Query Frame = 0


Query: 1   MATSAITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDV 60
           MATSAITKLPLVLLVCIAILASSVTARPT  AA  P+ EDFSLFPCISFVPKAT CVIDV
Sbjct: 1   MATSAITKLPLVLLVCIAILASSVTARPTIVAAATPTSEDFSLFPCISFVPKATKCVIDV 60

Query: 61  LKNAVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS 110
           LKNAV+PHPSCCEAIS+LHDCSSQFLKDI S DMILVKSICASWGVSIS
Sbjct: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSIS 109

[Close]

BLAST of CSPI01G17020 vs. NCBI nr
Match: KAA0050079.1 (hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 7.1e-42
Identity = 95/109 (87.16%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 1   MATSAITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDV 60
           MATSAITKLPLVL VCIAILASSVTA PT  AA  P+ EDFSLFPCISFVPKAT CVIDV
Sbjct: 1   MATSAITKLPLVLRVCIAILASSVTACPTIVAAATPTSEDFSLFPCISFVPKATKCVIDV 60

Query: 61  LKNAVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS 110
           LKN V+PHPSCCEAI++LHDCSSQFLKDI SGDMILVKSICASWGVSIS
Sbjct: 61  LKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSIS 109

[Close]

BLAST of CSPI01G17020 vs. NCBI nr
Match: KAA0050063.1 (hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 1.8e-40
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MATSAITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDV 60
           MATSAITKLPL+LLVCIAILASSVTARPT  AA  P  +DFSLFPCISFVP AT  VIDV
Sbjct: 1   MATSAITKLPLILLVCIAILASSVTARPTIVAAATPISKDFSLFPCISFVPMATKRVIDV 60

Query: 61  LKNAVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS 110
           LKNAV+PHPSCCEAIS+LHDCSSQFLKDI S DMILVKSICASWGVSIS
Sbjct: 61  LKNAVAPHPSCCEAISQLHDCSSQFLKDIPSDDMILVKSICASWGVSIS 109

[Close]

BLAST of CSPI01G17020 vs. NCBI nr
Match: TYK10343.1 (hypothetical protein E5676_scaffold367G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 2.1e-33
Identity = 82/106 (77.36%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 4   SAITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDVLKN 63
           ++ TKLPL LL CI ILASSV ARP   AA  P + D SLFPC SFVPKAT CVIDVLKN
Sbjct: 3   ASFTKLPLALLFCIFILASSVMARPVTVAAAAP-IGDISLFPCKSFVPKATECVIDVLKN 62

Query: 64  AVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS 110
           AV+PHPSCC+AIS+LHDCSSQFLKDI S DMILVKSICA WGVSIS
Sbjct: 63  AVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

[Close]

BLAST of CSPI01G17020 vs. NCBI nr
Match: KAA0050065.1 (hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-33
Identity = 82/106 (77.36%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 4   SAITKLPLVLLVCIAILASSVTARPTAAAATPPSLEDFSLFPCISFVPKATICVIDVLKN 63
           ++ TKLPL LL CI ILASSV ARP   AA  P   D SLFPC SFVPKAT CVIDVLKN
Sbjct: 3   ASFTKLPLALLFCIFILASSVMARPVTVAAAAPE-GDISLFPCKSFVPKATECVIDVLKN 62

Query: 64  AVSPHPSCCEAISKLHDCSSQFLKDISSGDMILVKSICASWGVSIS 110
           AV+PHPSCC+AIS+LHDCSSQFLKDI S DMILVKSICA WGVSIS
Sbjct: 63  AVAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSIS 107

The following BLAST results are available for this feature:

BLAST of CSPI01G17020 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G17020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFS6	6.3e-44	89.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9B0	3.5e-42	87.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U2D8	8.5e-41	86.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CEQ4	1.0e-33	77.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U8Y3	1.7e-33	77.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CSPI01G17020 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10345.1	1.3e-43	89.91	hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]	[more]
KAA0050079.1	7.1e-42	87.16	hypothetical protein E6C27_scaffold675G00630 [Cucumis melo var. makuwa]	[more]
KAA0050063.1	1.8e-40	86.24	hypothetical protein E6C27_scaffold675G00440 [Cucumis melo var. makuwa]	[more]
TYK10343.1	2.1e-33	77.36	hypothetical protein E5676_scaffold367G00180 [Cucumis melo var. makuwa]	[more]
KAA0050065.1	3.6e-33	77.36	hypothetical protein E6C27_scaffold675G00460 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI01G17020 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G17020.1	CSPI01G17020.1	mRNA