CSPI01G14070 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G14070
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	histone H2B-like
Location	Chr1: 9634399 .. 9635546 (+)
RNA-Seq Expression	CSPI01G14070
Synteny	CSPI01G14070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACGACGTGTCGTCATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGCTGCAGAAACCCCCGACGGTGGCGGTGAAGTGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGGTCCGGAAAGGTTAGAGACTTAAGAGTATTGATATAATTTAACATGATATTATTATAATTAAATCAATTTTTGACAATGAATTTGTTAAGTGACATCAATTTGAACTCTTTTAACTTTCGGCCCACTAATTTTCTAACAAACAACAATTTTTCACTCATTGATGCATGTAGTTTCATATTGTATATGTTTTATAATTAATTGAACACATAAAGGTGTAGCAAACATACCATCATGTCCAAATATATAGAACGACGAATTTGCAGATATAATTGTGTTTGAGTTGAATGAATAGGAAAAAAAGGTGGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTACATACATACATACATACATACATACATACATATATATATATATATATATATTCAAATTATTATACAATCATTTTTATTATTATTTTATTAATATTATAATAAATTAATTGATAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAA

mRNA sequence

AAAACGACGTGTCGTCATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGCTGCAGAAACCCCCGACGGTGGCGGTGAAGTGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGGTCCGGAAAGGAAAAAAAGGTGGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAA

Coding sequence (CDS)

ATGCCGCCGAGGCGATCCCGTAGAGTCGTCGGTTCTGTTGTCCGGACAACCACAAGAGTAGTTGAAGAAACCGTACAAGTAGCGGTTGTGGAGAAAGAGAGCCAAGATTTAACTCAAGAACCTGACATGGCAGCTGCAGAAACCCCCGACGGTGGCGGTGAAGTGTTCCGGAGGACTGTCCCGGTGGAAGAGATTAAGGCTCATCCACAACAGCCGATAAGTCATCCTGTGTCTGAAGATTTCGAGTTGAGAAGGGCAACAGATTCGACTTCGCAGCTGACTGAGGACACCGCAGTGACTCCGGAGATGGAACCCAAGGTCCGGAAAGGAAAAAAAGGTGGGAGGAGGAGGAAGAAGAAGAAGGAGAAGAAAAGGGAAATTAAGGAAGGAAAAAGGAGAAGCAAAAAGAGTGGTGGTGGTGGTGGAAGAGAGGGATATAAGAGGTATGTGTTCAAGGTGTTGAAGCAAGTTCATCCAGAGGTAGGAATTTCAGGACAAGCTATGCTTATTTTGAATAATTTCATGAATGATATGTTTCAAAGACTTGCAGAAGAGGCAACCAAACTCTCCAAATATACAGGTGGAATGACCCTGTCGTCAAGGGAAATACAGGGGGCGGTGAGGTTGGTGTTACCCGGGGAGCTGGGGAAGCACGCCATTGCTGAGGGAACTAAAGCTGTGTCTAATTATGTATCCTATGGTAATAGAGCAACAAAATCCAAATTACCTTAA

Protein sequence

MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAAAETPDGGGEVFRRTVPVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKVRKGKKGGRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKSKLP*

Homology

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BLAST of CSPI01G14070 vs. ExPASy Swiss-Prot
Match: Q9SGE3 (Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-28
Identity = 98/257 (38.13%), Postives = 147/257 (57.20%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVE-------------KESQDLTQEPDMA--- 60
           M PR+ + V    V    +VVEET++V V E             +E+QDLT    +    
Sbjct: 1   MAPRKPKVV---SVTKKKKVVEETIKVTVTEEGDPCVITETANDQETQDLTFSIPVGENV 60

Query: 61  -----AAETPDGGGEVFRRTVPVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAV 120
                  E PD       R++PV E     + P+      D    +  ++  ++ ++ + 
Sbjct: 61  TTVEIPVEVPD------ERSLPVGENVTTVKIPVD---DRDESSPQPPETPVEVRDEPSP 120

Query: 121 TPEMEPKVRKGKKGGRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHP 180
            P   P  +   +G  ++  K EKK+E K+ K++ K+    G  + Y+RYV+KV+KQVHP
Sbjct: 121 QPPETPASK--SEGTLKKTDKVEKKQENKKKKKKKKRDDLAG--DEYRRYVYKVMKQVHP 180

Query: 181 EVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHA 237
           ++GI+ +AM ++N FM DMF+R+A+EA +LS YT   TLSSREI+ AVRLVLPGEL +HA
Sbjct: 181 DLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHA 240

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BLAST of CSPI01G14070 vs. ExPASy Swiss-Prot
Match: Q43215 (Histone H2B.4 OS=Triticum aestivum OX=4565 GN=TH153 PE=1 SV=3)

HSP 1 Score: 122.1 bits (305), Expect = 8.8e-27
Identity = 69/132 (52.27%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 101 PEMEPKVRKGKKGGRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPE 160
           P+ E KV   K+GG             K+GK++SKKS      E YK Y+FKVLKQVHP+
Sbjct: 20  PKAEKKVPTSKEGGE------------KKGKKKSKKS-----METYKIYIFKVLKQVHPD 79

Query: 161 VGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAI 220
           +GIS +AM I N+F+ND+F++LA E+ KL++Y    T++SREIQ +VRLVLPGEL KHA+
Sbjct: 80  IGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAV 134

Query: 221 AEGTKAVSNYVS 233
           +EGTKAV+ + S
Sbjct: 140 SEGTKAVTKFTS 134

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BLAST of CSPI01G14070 vs. ExPASy Swiss-Prot
Match: Q9ZUS0 (Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-26
Identity = 70/132 (53.03%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 101 PEMEPKVRKGKKGGRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPE 160
           P+ E K+ K   GG  +KKKK KK                   E YK Y+FKVLKQVHP+
Sbjct: 25  PKAEKKISK-DAGGSEKKKKKSKK-----------------SVETYKIYIFKVLKQVHPD 84

Query: 161 VGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAI 220
           VGISG+AM I+N+F+ND+F++LA+E++KL++Y    T++SREIQ AVRLVLPGEL KHA+
Sbjct: 85  VGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 138

Query: 221 AEGTKAVSNYVS 233
           +EGTKAV+ + S
Sbjct: 145 SEGTKAVTKFTS 138

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BLAST of CSPI01G14070 vs. ExPASy Swiss-Prot
Match: Q9LGH4 (Histone H2B.6 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.3e-26
Identity = 72/137 (52.55%), Postives = 98/137 (71.53%), Query Frame = 0


Query: 102 EMEPKVRKGKKGGRRRKKKKEKKREIKEGKRRS---KKSGGGGGR---EGYKRYVFKVLK 161
           E EP   K +K    +K K EK+    +G++ S   KK+G   G+   E YK Y+FKVLK
Sbjct: 16  EEEPAAEKAEKAPAGKKPKAEKRLPAGKGEKGSGEGKKAGRKKGKKSVETYKIYIFKVLK 75

Query: 162 QVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGEL 221
           QVHP++GIS +AM I+N+F+ND+F++LA EA KL++Y    T++SREIQ AVRLVLPGEL
Sbjct: 76  QVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGEL 135

Query: 222 GKHAIAEGTKAVSNYVS 233
            KHA++EGTKAV+ + S
Sbjct: 136 AKHAVSEGTKAVTKFTS 152

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BLAST of CSPI01G14070 vs. ExPASy Swiss-Prot
Match: P49120 (Histone H2B.4 OS=Zea mays OX=4577 PE=3 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 5.7e-26
Identity = 69/131 (52.67%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 102 EMEPKVRKGKKGGRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEV 161
           E +P   K +K  R  K+   K+   K+GK+++KKS      E YK Y+FKVLKQVHP++
Sbjct: 11  EKKPTEEKAEKKPRAEKRVPGKEGGEKKGKKKAKKS-----VETYKIYIFKVLKQVHPDI 70

Query: 162 GISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIA 221
           GIS +AM I+N+F+ND+F++LA EA KL++Y    T++SREIQ +VRLVLPGEL KHA++
Sbjct: 71  GISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVS 130

Query: 222 EGTKAVSNYVS 233
           EGTKAV+ + S
Sbjct: 131 EGTKAVTKFTS 136

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BLAST of CSPI01G14070 vs. ExPASy TrEMBL
Match: A0A0A0LSH9 (Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=3 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 5.4e-120
Identity = 238/243 (97.94%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAAAETPDGGGEVFRRTV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDM  AETPDGGGE+FRRTV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDM--AETPDGGGEMFRRTV 60

Query: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKVRKGKKGGRRRKKK 120
           PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPK+RKGKKG RRRKKK
Sbjct: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120

Query: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180
           KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ
Sbjct: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240
           RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240

Query: 241 KLP 244
           KLP
Sbjct: 241 KLP 241

[Close]

BLAST of CSPI01G14070 vs. ExPASy TrEMBL
Match: A0A1S3CH74 (histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.8e-106
Identity = 221/244 (90.57%), Postives = 230/244 (94.26%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAAAETPDGGGEVFRRTV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD   AET DGGGE+FRR V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD--TAETADGGGEMFRRPV 60

Query: 61  PVEEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKVRKGKKGGRRRK 120
           PVEEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP+V+KGKKGG RRK
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKGKKGG-RRK 120

Query: 121 KKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDM 180
           KKKEKKREIKEGKRRSK S  G GREGYKRYVFKVLKQVHPE+GISGQAMLILNNFMNDM
Sbjct: 121 KKKEKKREIKEGKRRSKNS-SGSGREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDM 180

Query: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRAT 240
           FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR T
Sbjct: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTT 240

Query: 241 KSKL 243
           KSKL
Sbjct: 241 KSKL 240

[Close]

BLAST of CSPI01G14070 vs. ExPASy TrEMBL
Match: A0A5A7UF12 (Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00860 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 1.0e-86
Identity = 186/244 (76.23%), Postives = 194/244 (79.51%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAAAETPDGGGEVFRRTV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD   AET DGGGE+FRR V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD--TAETADGGGEMFRRPV 60

Query: 61  PVEEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKVRKGKKGGRRRK 120
           PVEEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP             
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEP------------- 120

Query: 121 KKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDM 180
                                       +RYVFKVLKQVHPE+GISGQAMLILNNFMNDM
Sbjct: 121 ----------------------------ERYVFKVLKQVHPEIGISGQAMLILNNFMNDM 180

Query: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRAT 240
           FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR T
Sbjct: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTT 201

Query: 241 KSKL 243
           KSKL
Sbjct: 241 KSKL 201

[Close]

BLAST of CSPI01G14070 vs. ExPASy TrEMBL
Match: A0A5D3BHX3 (Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00310 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 5.2e-83
Identity = 181/244 (74.18%), Postives = 189/244 (77.46%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAAAETPDGGGEVFRRTV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD   AET DGGGE+FRR V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD--TAETADGGGEMFRRPV 60

Query: 61  PVEEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKVRKGKKGGRRRK 120
           PVEEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP             
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEP------------- 120

Query: 121 KKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDM 180
                                            +VLKQVHPE+GISGQAMLILNNFMNDM
Sbjct: 121 ---------------------------------EVLKQVHPEIGISGQAMLILNNFMNDM 180

Query: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRAT 240
           FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR T
Sbjct: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTT 196

Query: 241 KSKL 243
           KSKL
Sbjct: 241 KSKL 196

[Close]

BLAST of CSPI01G14070 vs. ExPASy TrEMBL
Match: A0A6J1FBI7 (histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 5.4e-72
Identity = 169/239 (70.71%), Postives = 191/239 (79.92%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAAAETPDGGGEVFRRTV 60
           MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+TQEP  A AET  GG  VFRRT+
Sbjct: 1   MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTQEP--ATAET--GGDGVFRRTI 60

Query: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKVRKGKKGGRRRKKK 120
           PVE+       P + PV  D +L R  DSTS++TED  VT +ME K R G +  R++ +K
Sbjct: 61  PVED-------PQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARDGVRESRKKNEK 120

Query: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180
           K K+RE+K  KRRS     GGGREGYKRYVFKVLKQVHPEVGISGQAM+ILNN MNDMF+
Sbjct: 121 K-KEREVK--KRRS-----GGGREGYKRYVFKVLKQVHPEVGISGQAMVILNNLMNDMFE 180

Query: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATK 240
           RLAEEATKLSKYTGG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSY +R T+
Sbjct: 181 RLAEEATKLSKYTGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQ 220

[Close]

BLAST of CSPI01G14070 vs. NCBI nr
Match: XP_031736247.1 (histone H2B [Cucumis sativus] >KGN64870.1 hypothetical protein Csa_022747 [Cucumis sativus])

HSP 1 Score: 440.3 bits (1131), Expect = 1.1e-119
Identity = 238/243 (97.94%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAAAETPDGGGEVFRRTV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDM  AETPDGGGE+FRRTV
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDM--AETPDGGGEMFRRTV 60

Query: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKVRKGKKGGRRRKKK 120
           PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPK+RKGKKG RRRKKK
Sbjct: 61  PVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKIRKGKKGRRRRKKK 120

Query: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180
           KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ
Sbjct: 121 KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQ 180

Query: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240
           RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS
Sbjct: 181 RLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATKS 240

Query: 241 KLP 244
           KLP
Sbjct: 241 KLP 241

[Close]

BLAST of CSPI01G14070 vs. NCBI nr
Match: XP_008462313.1 (PREDICTED: histone H2B type 1-A-like [Cucumis melo])

HSP 1 Score: 393.7 bits (1010), Expect = 1.2e-105
Identity = 221/244 (90.57%), Postives = 230/244 (94.26%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAAAETPDGGGEVFRRTV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD   AET DGGGE+FRR V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD--TAETADGGGEMFRRPV 60

Query: 61  PVEEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKVRKGKKGGRRRK 120
           PVEEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP+V+KGKKGG RRK
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEPEVQKGKKGG-RRK 120

Query: 121 KKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDM 180
           KKKEKKREIKEGKRRSK S  G GREGYKRYVFKVLKQVHPE+GISGQAMLILNNFMNDM
Sbjct: 121 KKKEKKREIKEGKRRSKNS-SGSGREGYKRYVFKVLKQVHPEIGISGQAMLILNNFMNDM 180

Query: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRAT 240
           FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR T
Sbjct: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTT 240

Query: 241 KSKL 243
           KSKL
Sbjct: 241 KSKL 240

[Close]

BLAST of CSPI01G14070 vs. NCBI nr
Match: XP_038894659.1 (LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida])

HSP 1 Score: 337.4 bits (864), Expect = 1.0e-88
Identity = 193/244 (79.10%), Postives = 213/244 (87.30%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAAAETPDG-GGEVFRRT 60
           MPPRRSRRVVGSVVRTTTR+VEETVQVAV+EKESQDLTQEP+    +T +G GG+VFRRT
Sbjct: 1   MPPRRSRRVVGSVVRTTTRMVEETVQVAVLEKESQDLTQEPE--TTQTAEGRGGDVFRRT 60

Query: 61  VPVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKVRKGKKGGRRRKK 120
           +PVEE     +QP + PVSEDF+ R+ TDSTSQLTEDTA TPE+EP+VR GKK GR+RKK
Sbjct: 61  IPVEEKAPPREQPKTFPVSEDFDTRKPTDSTSQLTEDTAATPEVEPEVRNGKK-GRKRKK 120

Query: 121 KKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMF 180
           K E     KEGKRR K SGGGGGREGYKRYVFKVLKQVHPE+GISG+AM+ILNNFMNDMF
Sbjct: 121 KME-----KEGKRRRKSSGGGGGREGYKRYVFKVLKQVHPEIGISGKAMVILNNFMNDMF 180

Query: 181 QRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRATK 240
           QRLA+EATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVS YVSY +  TK
Sbjct: 181 QRLADEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSAYVSYVH--TK 234

Query: 241 SKLP 244
           + LP
Sbjct: 241 TXLP 234

[Close]

BLAST of CSPI01G14070 vs. NCBI nr
Match: KAA0052101.1 (histone H2B type 1-A-like [Cucumis melo var. makuwa])

HSP 1 Score: 329.7 bits (844), Expect = 2.1e-86
Identity = 186/244 (76.23%), Postives = 194/244 (79.51%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAAAETPDGGGEVFRRTV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD   AET DGGGE+FRR V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD--TAETADGGGEMFRRPV 60

Query: 61  PVEEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKVRKGKKGGRRRK 120
           PVEEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP             
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEP------------- 120

Query: 121 KKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDM 180
                                       +RYVFKVLKQVHPE+GISGQAMLILNNFMNDM
Sbjct: 121 ----------------------------ERYVFKVLKQVHPEIGISGQAMLILNNFMNDM 180

Query: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRAT 240
           FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR T
Sbjct: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTT 201

Query: 241 KSKL 243
           KSKL
Sbjct: 241 KSKL 201

[Close]

BLAST of CSPI01G14070 vs. NCBI nr
Match: TYJ98095.1 (histone H2B type 1-A-like [Cucumis melo var. makuwa])

HSP 1 Score: 317.4 bits (812), Expect = 1.1e-82
Identity = 181/244 (74.18%), Postives = 189/244 (77.46%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPDMAAAETPDGGGEVFRRTV 60
           MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD   AET DGGGE+FRR V
Sbjct: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVEKESQDLTQEPD--TAETADGGGEMFRRPV 60

Query: 61  PVEEIKA--HPQQPISHPVSEDFELRRATDSTSQLTEDTAVTPEMEPKVRKGKKGGRRRK 120
           PVEEIK+   P+QPI+HPVSE+FE+RRATDSTSQLTEDTAVTPEMEP             
Sbjct: 61  PVEEIKSPDPPEQPITHPVSENFEVRRATDSTSQLTEDTAVTPEMEP------------- 120

Query: 121 KKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDM 180
                                            +VLKQVHPE+GISGQAMLILNNFMNDM
Sbjct: 121 ---------------------------------EVLKQVHPEIGISGQAMLILNNFMNDM 180

Query: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRAT 240
           FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNR T
Sbjct: 181 FQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAIAEGTKAVSNYVSYGNRTT 196

Query: 241 KSKL 243
           KSKL
Sbjct: 241 KSKL 196

[Close]

BLAST of CSPI01G14070 vs. TAIR 10
Match: AT1G08170.1 (Histone superfamily protein )

HSP 1 Score: 128.3 bits (321), Expect = 8.7e-30
Identity = 98/257 (38.13%), Postives = 147/257 (57.20%), Query Frame = 0


Query: 1   MPPRRSRRVVGSVVRTTTRVVEETVQVAVVE-------------KESQDLTQEPDMA--- 60
           M PR+ + V    V    +VVEET++V V E             +E+QDLT    +    
Sbjct: 1   MAPRKPKVV---SVTKKKKVVEETIKVTVTEEGDPCVITETANDQETQDLTFSIPVGENV 60

Query: 61  -----AAETPDGGGEVFRRTVPVEEIKAHPQQPISHPVSEDFELRRATDSTSQLTEDTAV 120
                  E PD       R++PV E     + P+      D    +  ++  ++ ++ + 
Sbjct: 61  TTVEIPVEVPD------ERSLPVGENVTTVKIPVD---DRDESSPQPPETPVEVRDEPSP 120

Query: 121 TPEMEPKVRKGKKGGRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHP 180
            P   P  +   +G  ++  K EKK+E K+ K++ K+    G  + Y+RYV+KV+KQVHP
Sbjct: 121 QPPETPASK--SEGTLKKTDKVEKKQENKKKKKKKKRDDLAG--DEYRRYVYKVMKQVHP 180

Query: 181 EVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHA 237
           ++GI+ +AM ++N FM DMF+R+A+EA +LS YT   TLSSREI+ AVRLVLPGEL +HA
Sbjct: 181 DLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHA 240

[Close]

BLAST of CSPI01G14070 vs. TAIR 10
Match: AT2G37470.1 (Histone superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-27
Identity = 70/132 (53.03%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 101 PEMEPKVRKGKKGGRRRKKKKEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLKQVHPE 160
           P+ E K+ K   GG  +KKKK KK                   E YK Y+FKVLKQVHP+
Sbjct: 25  PKAEKKISK-DAGGSEKKKKKSKK-----------------SVETYKIYIFKVLKQVHPD 84

Query: 161 VGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGELGKHAI 220
           VGISG+AM I+N+F+ND+F++LA+E++KL++Y    T++SREIQ AVRLVLPGEL KHA+
Sbjct: 85  VGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAV 138

Query: 221 AEGTKAVSNYVS 233
           +EGTKAV+ + S
Sbjct: 145 SEGTKAVTKFTS 138

[Close]

BLAST of CSPI01G14070 vs. TAIR 10
Match: AT3G53650.1 (Histone superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 4.0e-27
Identity = 69/137 (50.36%), Postives = 97/137 (70.80%), Query Frame = 0


Query: 103 MEPKVRKGKKGGRRRKKK-------KEKKREIKEGKRRSKKSGGGGGREGYKRYVFKVLK 162
           M PK  + K  G++  +K       K +K+  KEG    KK       E YK Y+FKVLK
Sbjct: 1   MAPKAAEKKPAGKKPAEKAPAEKLPKAEKKITKEGGSEKKKKKSKKNIETYKIYIFKVLK 60

Query: 163 QVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVRLVLPGEL 222
           QVHP++GISG+AM I+N+F+ND+F++LA+E+++L++Y    T++SREIQ AVRLVLPGEL
Sbjct: 61  QVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGEL 120

Query: 223 GKHAIAEGTKAVSNYVS 233
            KHA++EGTKAV+ + S
Sbjct: 121 SKHAVSEGTKAVTKFTS 137

[Close]

BLAST of CSPI01G14070 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-26
Identity = 72/149 (48.32%), Postives = 103/149 (69.13%), Query Frame = 0


Query: 99  VTPEMEPKVRKGKKGGRR---RKKKKEK---KREIKEGKRRSKKSGGGGGR--------- 158
           + P+ E K  + K    +    K K EK   +++ K GK+  K++G GG +         
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSV 60

Query: 159 EGYKRYVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREI 218
           E YK Y+FKVLKQVHP++GIS +AM I+N+F+ND+F++LA+EA+KL++Y    T++SREI
Sbjct: 61  ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREI 120

Query: 219 QGAVRLVLPGELGKHAIAEGTKAVSNYVS 233
           Q AVRLVLPGEL KHA++EGTKAV+ + S
Sbjct: 121 QTAVRLVLPGELAKHAVSEGTKAVTKFTS 149

[Close]

BLAST of CSPI01G14070 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 2.6e-26
Identity = 72/144 (50.00%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 103 MEPKVRK--GKKGGRRRKKKKEK---KREIKEGKRRSKKSGGGGGR---------EGYKR 162
           M PK  K   +K     K K EK   +++ K GK+  K++G GG +         E YK 
Sbjct: 1   MAPKAEKKPAEKKPVEEKSKAEKAPAEKKPKAGKKLPKEAGAGGDKKKKMKKKSVETYKI 60

Query: 163 YVFKVLKQVHPEVGISGQAMLILNNFMNDMFQRLAEEATKLSKYTGGMTLSSREIQGAVR 222
           Y+FKVLKQVHP++GIS +AM I+N+F+ND+F++LA E++KL++Y    T++SREIQ AVR
Sbjct: 61  YIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVR 120

Query: 223 LVLPGELGKHAIAEGTKAVSNYVS 233
           LVLPGEL KHA++EGTKAV+ + S
Sbjct: 121 LVLPGELAKHAVSEGTKAVTKFTS 144

The following BLAST results are available for this feature:

BLAST of CSPI01G14070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGE3	1.2e-28	38.13	Histone H2B.2 OS=Arabidopsis thaliana OX=3702 GN=At1g08170 PE=2 SV=1	[more]
Q43215	8.8e-27	52.27	Histone H2B.4 OS=Triticum aestivum OX=4565 GN=TH153 PE=1 SV=3	[more]
Q9ZUS0	2.0e-26	53.03	Histone H2B.4 OS=Arabidopsis thaliana OX=3702 GN=At2g37470 PE=1 SV=3	[more]
Q9LGH4	4.3e-26	52.55	Histone H2B.6 OS=Oryza sativa subsp. japonica OX=39947 GN=H2B.6 PE=3 SV=1	[more]
P49120	5.7e-26	52.67	Histone H2B.4 OS=Zea mays OX=4577 PE=3 SV=3	[more]

BLAST of CSPI01G14070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSH9	5.4e-120	97.94	Histone domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G136770 PE=...	[more]
A0A1S3CH74	5.8e-106	90.57	histone H2B type 1-A-like OS=Cucumis melo OX=3656 GN=LOC103500693 PE=3 SV=1	[more]
A0A5A7UF12	1.0e-86	76.23	Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3BHX3	5.2e-83	74.18	Histone H2B type 1-A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1FBI7	5.4e-72	70.71	histone H2B.6-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443927 PE=3...	[more]

BLAST of CSPI01G14070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736247.1	1.1e-119	97.94	histone H2B [Cucumis sativus] >KGN64870.1 hypothetical protein Csa_022747 [Cucum...	[more]
XP_008462313.1	1.2e-105	90.57	PREDICTED: histone H2B type 1-A-like [Cucumis melo]	[more]
XP_038894659.1	1.0e-88	79.10	LOW QUALITY PROTEIN: histone H2B-like [Benincasa hispida]	[more]
KAA0052101.1	2.1e-86	76.23	histone H2B type 1-A-like [Cucumis melo var. makuwa]	[more]
TYJ98095.1	1.1e-82	74.18	histone H2B type 1-A-like [Cucumis melo var. makuwa]	[more]

BLAST of CSPI01G14070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08170.1	8.7e-30	38.13	Histone superfamily protein	[more]
AT2G37470.1	1.4e-27	53.03	Histone superfamily protein	[more]
AT3G53650.1	4.0e-27	50.36	Histone superfamily protein	[more]
AT5G59910.1	1.5e-26	48.32	Histone superfamily protein	[more]
AT3G46030.1	2.6e-26	50.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 204..217 score: 78.23 coord: 146..164 score: 69.17 coord: 165..185 score: 50.75 coord: 217..230 score: 69.32 coord: 187..204 score: 46.4
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 131..232 e-value: 7.6E-46 score: 168.3
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 1..234
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 99..233 e-value: 5.2E-48 score: 164.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 117..232
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 86..209 e-value: 7.1E-18 score: 65.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..143
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..131
None	No IPR available	PANTHER	PTHR23428:SF238	HISTONE H2B.2	coord: 1..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G14070.1	CSPI01G14070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity