CSPI01G13640 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G13640
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Sister chromatid cohesion protein PDS5-like protein A
Location	Chr1: 9167807 .. 9168437 (-)
RNA-Seq Expression	CSPI01G13640
Synteny	CSPI01G13640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCGGAAACCAATTCAGCTACAGCTTATCCGGAATACATATTACCATTCTTGGTTCATGCTCTTGCTCATCATTCATGTCCAGATGTTGATGAATGCAAGGATGTCCAGGCATATGAACTAGTATATAGGTAAGCTTATATCTCAATATCACTTATATTTATTCGGTGGTATATATGTTAGAAAAGAGCTCAATGAGAAATATATATATATAGAACTAATAATATGCTGTAAATTTGGTAAGTTTAGAAAAGTATACCCATCCCTGTACATAAGTGGTTTAGTGAGATTGATTACGAACTCTGTGTTATTGAATTATTTATTTTTTATCTTTTTTTTTTTTTTTTGGTATTAAGTTTGATGAAAATTTTGTAAAGTTCGATGAAAATATTTGTAAAGATCTGCAAATATAGACATGAAGCCATTTTGGTGTTTGGCTGTTTGTTTTGGTTGCGTTCTCATTTTCTTTAACTGCAGGAAAATATACCCATTAAAGAGGTTTTATGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCAGTAAGGCTGCTGAGGAAAGGCTGAAGATTTTTAGTGACGATAAGCTTGAGGAAAAGAAGTTAATGCTTCACTTACTAGTAGCATTGTGA

mRNA sequence

ATGCAATCGGAAACCAATTCAGCTACAGCTTATCCGGAATACATATTACCATTCTTGGTTCATGCTCTTGCTCATCATTCATGTCCAGATGTTGATGAATGCAAGGATGTCCAGGCATATGAACTAGTATATAGGAAAATATACCCATTAAAGAGGTTTTATGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCAGTAAGGCTGCTGAGGAAAGGCTGAAGATTTTTAGTGACGATAAGCTTGAGGAAAAGAAGTTAATGCTTCACTTACTAGTAGCATTGTGA

Coding sequence (CDS)

ATGCAATCGGAAACCAATTCAGCTACAGCTTATCCGGAATACATATTACCATTCTTGGTTCATGCTCTTGCTCATCATTCATGTCCAGATGTTGATGAATGCAAGGATGTCCAGGCATATGAACTAGTATATAGGAAAATATACCCATTAAAGAGGTTTTATGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCAGTAAGGCTGCTGAGGAAAGGCTGAAGATTTTTAGTGACGATAAGCTTGAGGAAAAGAAGTTAATGCTTCACTTACTAGTAGCATTGTGA

Protein sequence

MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKKLMLHLLVAL*

Homology

[Close]

BLAST of CSPI01G13640 vs. ExPASy Swiss-Prot
Match: Q08436 (Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia OX=4092 GN=PMA3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.7e-07
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 33 ECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          E  D    E V  +  P++  +ENLRC+KEGLT+ AA+ERL IF  +KLEEKK
Sbjct: 6  EVLDAVLKETVDLENIPIEEVFENLRCTKEGLTATAAQERLSIFGYNKLEEKK 58

[Close]

BLAST of CSPI01G13640 vs. ExPASy Swiss-Prot
Match: Q9SU58 (ATPase 4, plasma membrane-type OS=Arabidopsis thaliana OX=3702 GN=AHA4 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 6.7e-07
Identity = 24/37 (64.86%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 49 PLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          P++  +ENLRCSKEGLT++AA+ERL +F  +KLEEKK
Sbjct: 26 PIEEVFENLRCSKEGLTTQAADERLALFGHNKLEEKK 62

[Close]

BLAST of CSPI01G13640 vs. ExPASy Swiss-Prot
Match: Q9LV11 (ATPase 11, plasma membrane-type OS=Arabidopsis thaliana OX=3702 GN=AHA11 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.7e-07
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 30 DVDECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          D +E  +    E V  +  P++  +E+LRCS+EGLT++AA+ERL +F  +KLEEKK
Sbjct: 3  DKEEVLEAVLKETVDLENVPIEEVFESLRCSREGLTTEAADERLALFGHNKLEEKK 58

[Close]

BLAST of CSPI01G13640 vs. ExPASy Swiss-Prot
Match: Q08435 (Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia OX=4092 GN=PMA1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.7e-07
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 33 ECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          E  D    E V  +  P++  +ENLRC+KEGLT+ AA+ERL IF  +KLEEKK
Sbjct: 7  EVLDAVLKEAVDLENIPIEEVFENLRCTKEGLTATAAQERLAIFGYNKLEEKK 59

[Close]

BLAST of CSPI01G13640 vs. ExPASy Swiss-Prot
Match: P22180 (Plasma membrane ATPase 1 OS=Solanum lycopersicum OX=4081 GN=LHA1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-06
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 0


Query: 33 ECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          E  D    E V  +  P++  +ENLRC++EGLT+ AA+ERL IF  +KLEEKK
Sbjct: 6  EVLDAVLKETVDLENIPIEEVFENLRCTREGLTATAAQERLSIFGYNKLEEKK 58

[Close]

BLAST of CSPI01G13640 vs. ExPASy TrEMBL
Match: A0A0A0LSQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G120440 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.4e-45
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60
          MQSETNSATAYPEYILP+LVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS
Sbjct: 1  MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60

Query: 61 KEGLTSKAAEERLKIFSDDKLEEKKLMLHLLVAL 95
          KEGLTS+AAEERLKIFSDDKLEEKKLMLHLLVAL
Sbjct: 61 KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVAL 94

[Close]

BLAST of CSPI01G13640 vs. ExPASy TrEMBL
Match: A0A5D3E6K9 (Sister chromatid cohesion protein PDS5-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001700 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1    MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRF--YENLR 60
            MQSETN  TAYPEYILP+LVHALAHHSCPDVDECKDV+AYELVYR+++ +     +++  
Sbjct: 982  MQSETNPTTAYPEYILPYLVHALAHHSCPDVDECKDVKAYELVYRRLHLILSLLVHKDED 1041

Query: 61   CSKEGLTSKAAEERLKIFS 78
               E  ++K  E    IFS
Sbjct: 1042 LKSEANSTKEKENVSTIFS 1060

[Close]

BLAST of CSPI01G13640 vs. ExPASy TrEMBL
Match: A0A1S4E4A6 (LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog A OS=Cucumis melo OX=3656 GN=LOC103501732 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1    MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRF--YENLR 60
            MQSETN  TAYPEYILP+LVHALAHHSCPDVDECKDV+AYELVYR+++ +     +++  
Sbjct: 952  MQSETNPTTAYPEYILPYLVHALAHHSCPDVDECKDVKAYELVYRRLHLILSLLVHKDED 1011

Query: 61   CSKEGLTSKAAEERLKIFS 78
               E  ++K  E    IFS
Sbjct: 1012 LKSEANSTKEKENVSTIFS 1030

[Close]

BLAST of CSPI01G13640 vs. ExPASy TrEMBL
Match: A0A6J1HQY6 (sister chromatid cohesion protein PDS5 homolog A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466563 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIY 49
           MQSE N  TAYPEYI+P+LVHALAHHSCPDVDECKDV+AYELVYR+++
Sbjct: 952 MQSEANPMTAYPEYIIPYLVHALAHHSCPDVDECKDVKAYELVYRRLH 999

[Close]

BLAST of CSPI01G13640 vs. ExPASy TrEMBL
Match: A0A6J1HT95 (sister chromatid cohesion protein PDS5 homolog A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466563 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 0


Query: 1   MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIY 49
           MQSE N  TAYPEYI+P+LVHALAHHSCPDVDECKDV+AYELVYR+++
Sbjct: 952 MQSEANPMTAYPEYIIPYLVHALAHHSCPDVDECKDVKAYELVYRRLH 999

[Close]

BLAST of CSPI01G13640 vs. NCBI nr
Match: KAE8652769.1 (hypothetical protein Csa_022895 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 1.3e-44
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60
          MQSETNSATAYPEYILP+LVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS
Sbjct: 1  MQSETNSATAYPEYILPYLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCS 60

Query: 61 KEGLTSKAAEERLKIFSDDKLEEKKLMLHLLVAL 95
          KEGLTS+AAEERLKIFSDDKLEEKKLMLHLLVAL
Sbjct: 61 KEGLTSEAAEERLKIFSDDKLEEKKLMLHLLVAL 94

[Close]

BLAST of CSPI01G13640 vs. NCBI nr
Match: XP_038893527.1 (sister chromatid cohesion protein PDS5 homolog B isoform X3 [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 41/48 (85.42%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1   MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIY 49
           MQSETNS TAYPEYI+P+LVHALAHHSCPDVDECKDV+AYELVYR+++
Sbjct: 952 MQSETNSTTAYPEYIVPYLVHALAHHSCPDVDECKDVKAYELVYRRLH 999

[Close]

BLAST of CSPI01G13640 vs. NCBI nr
Match: XP_038893525.1 (sister chromatid cohesion protein PDS5 homolog B isoform X1 [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 41/48 (85.42%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1   MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIY 49
           MQSETNS TAYPEYI+P+LVHALAHHSCPDVDECKDV+AYELVYR+++
Sbjct: 952 MQSETNSTTAYPEYIVPYLVHALAHHSCPDVDECKDVKAYELVYRRLH 999

[Close]

BLAST of CSPI01G13640 vs. NCBI nr
Match: XP_038893526.1 (sister chromatid cohesion protein PDS5 homolog B isoform X2 [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-16
Identity = 41/48 (85.42%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 1   MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIY 49
           MQSETNS TAYPEYI+P+LVHALAHHSCPDVDECKDV+AYELVYR+++
Sbjct: 952 MQSETNSTTAYPEYIVPYLVHALAHHSCPDVDECKDVKAYELVYRRLH 999

[Close]

BLAST of CSPI01G13640 vs. NCBI nr
Match: TYK30945.1 (sister chromatid cohesion protein PDS5-like protein A [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-16
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1    MQSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRF--YENLR 60
            MQSETN  TAYPEYILP+LVHALAHHSCPDVDECKDV+AYELVYR+++ +     +++  
Sbjct: 982  MQSETNPTTAYPEYILPYLVHALAHHSCPDVDECKDVKAYELVYRRLHLILSLLVHKDED 1041

Query: 61   CSKEGLTSKAAEERLKIFS 78
               E  ++K  E    IFS
Sbjct: 1042 LKSEANSTKEKENVSTIFS 1060

[Close]

BLAST of CSPI01G13640 vs. TAIR 10
Match: AT5G47690.1 (binding )

HSP 1 Score: 80.9 bits (198), Expect = 6.2e-16
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 2    QSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCSK 61
            Q++ NS T YP +ILP+LVHALAHHSCPDV++CKDV+ YE++YR++Y +      L   +
Sbjct: 953  QTDANSVTLYPHHILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISML--LHKEE 1012

Query: 62   EGLTSKAAEER 73
            +G T    +ER
Sbjct: 1013 DGKTEDIDKER 1021

[Close]

BLAST of CSPI01G13640 vs. TAIR 10
Match: AT5G47690.2 (binding )

HSP 1 Score: 80.9 bits (198), Expect = 6.2e-16
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 2    QSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCSK 61
            Q++ NS T YP +ILP+LVHALAHHSCPDV++CKDV+ YE++YR++Y +      L   +
Sbjct: 953  QTDANSVTLYPHHILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISML--LHKEE 1012

Query: 62   EGLTSKAAEER 73
            +G T    +ER
Sbjct: 1013 DGKTEDIDKER 1021

[Close]

BLAST of CSPI01G13640 vs. TAIR 10
Match: AT5G47690.3 (binding )

HSP 1 Score: 80.9 bits (198), Expect = 6.2e-16
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 2    QSETNSATAYPEYILPFLVHALAHHSCPDVDECKDVQAYELVYRKIYPLKRFYENLRCSK 61
            Q++ NS T YP +ILP+LVHALAHHSCPDV++CKDV+ YE++YR++Y +      L   +
Sbjct: 953  QTDANSVTLYPHHILPYLVHALAHHSCPDVEKCKDVKEYEMIYRQLYLIISML--LHKEE 1012

Query: 62   EGLTSKAAEER 73
            +G T    +ER
Sbjct: 1013 DGKTEDIDKER 1021

[Close]

BLAST of CSPI01G13640 vs. TAIR 10
Match: AT3G47950.1 (H(+)-ATPase 4 )

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-08
Identity = 24/37 (64.86%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 49 PLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          P++  +ENLRCSKEGLT++AA+ERL +F  +KLEEKK
Sbjct: 26 PIEEVFENLRCSKEGLTTQAADERLALFGHNKLEEKK 62

[Close]

BLAST of CSPI01G13640 vs. TAIR 10
Match: AT5G62670.1 (H(+)-ATPase 11 )

HSP 1 Score: 54.3 bits (129), Expect = 6.2e-08
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 30 DVDECKDVQAYELVYRKIYPLKRFYENLRCSKEGLTSKAAEERLKIFSDDKLEEKK 86
          D +E  +    E V  +  P++  +E+LRCS+EGLT++AA+ERL +F  +KLEEKK
Sbjct: 3  DKEEVLEAVLKETVDLENVPIEEVFESLRCSREGLTTEAADERLALFGHNKLEEKK 58

The following BLAST results are available for this feature:

BLAST of CSPI01G13640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08436	6.7e-07	52.83	Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia OX=4092 GN=PMA3 PE=1 SV=1	[more]
Q9SU58	6.7e-07	64.86	ATPase 4, plasma membrane-type OS=Arabidopsis thaliana OX=3702 GN=AHA4 PE=2 SV=2	[more]
Q9LV11	8.7e-07	46.43	ATPase 11, plasma membrane-type OS=Arabidopsis thaliana OX=3702 GN=AHA11 PE=1 SV...	[more]
Q08435	8.7e-07	52.83	Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia OX=4092 GN=PMA1 PE=2 SV=1	[more]
P22180	1.5e-06	50.94	Plasma membrane ATPase 1 OS=Solanum lycopersicum OX=4081 GN=LHA1 PE=2 SV=1	[more]

BLAST of CSPI01G13640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSQ4	6.4e-45	97.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G120440 PE=4 SV=1	[more]
A0A5D3E6K9	1.3e-16	59.49	Sister chromatid cohesion protein PDS5-like protein A OS=Cucumis melo var. makuw...	[more]
A0A1S4E4A6	1.3e-16	59.49	LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog A OS=Cucumis...	[more]
A0A6J1HQY6	1.1e-15	81.25	sister chromatid cohesion protein PDS5 homolog A-like isoform X2 OS=Cucurbita ma...	[more]
A0A6J1HT95	1.1e-15	81.25	sister chromatid cohesion protein PDS5 homolog A-like isoform X1 OS=Cucurbita ma...	[more]

BLAST of CSPI01G13640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652769.1	1.3e-44	97.87	hypothetical protein Csa_022895 [Cucumis sativus]	[more]
XP_038893527.1	1.5e-16	85.42	sister chromatid cohesion protein PDS5 homolog B isoform X3 [Benincasa hispida]	[more]
XP_038893525.1	1.5e-16	85.42	sister chromatid cohesion protein PDS5 homolog B isoform X1 [Benincasa hispida]	[more]
XP_038893526.1	1.5e-16	85.42	sister chromatid cohesion protein PDS5 homolog B isoform X2 [Benincasa hispida]	[more]
TYK30945.1	2.6e-16	59.49	sister chromatid cohesion protein PDS5-like protein A [Cucumis melo var. makuwa]	[more]

BLAST of CSPI01G13640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47690.1	6.2e-16	50.70	binding	[more]
AT5G47690.2	6.2e-16	50.70	binding	[more]
AT5G47690.3	6.2e-16	50.70	binding	[more]
AT3G47950.1	4.8e-08	64.86	H(+)-ATPase 4	[more]
AT5G62670.1	6.2e-08	46.43	H(+)-ATPase 11	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12663:SF27	BINDING PROTEIN-RELATED	coord: 3..48
IPR039776	Sister chromatid cohesion protein Pds5	PANTHER	PTHR12663	ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED	coord: 3..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G13640.1	CSPI01G13640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007064	mitotic sister chromatid cohesion
cellular_component	GO:0005634	nucleus