CSPI01G12880 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G12880
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLOB domain-containing protein
LocationChr1: 8397631 .. 8398867 (+)
RNA-Seq ExpressionCSPI01G12880
SyntenyCSPI01G12880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTCTCGTCTCTCTCTCTATATATTATATTCTTCGTTCTTCTTCACAGCCAAAACCAACTCCATCTCTCTCTCTCCACTGACTCTAAAATGGAGTCTACTGACACAAAATCCAGCCCGACTTCAACTCTTCTCCTTTCTCACTCCCCGTCGCCGTCTCCGTCTCCTTCACCGCCGCCGACTGTTCAGGCCCACGTGGTGGTCACTCCATGTGCGGCCTGCAAGATTCTGCGTCGGAGATGCACACAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGTACTTCCTTGATCCCTAATTTTCTGTTTCTCTCTTTCAAATTTCGCTGTCTTTTCTTCTTGTTTCTATGTTTGAAAATTATGAATTCCGTTCTTGAAATTGAAAATTGACCTTAACAACTTAACGAAAAACCATCGTTCTGGCTGGAATGAAGTTTGACGAATTCACAATCCTATTATGTTTGATTGCTTTTGCTTGATGAAAATTTGGAGCTATTACGTTCATACATCATGAAAATTGGTAGAATCAAATGAAAACACCCAACTGTTCGATTAATGCCCTCGAACAATCCATCATATTGAATGTTTTATTGAATTCTTCAGGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTACAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCGCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGAAAAAGAAAAACTTGAGATTTCTAAGACAAAGGTTTTGGGAAGTCAAAGTTGGATTGGTTTTGAATAGAATATAGGAAAGTTAAGTAGTTGAATATTGGGTAATATTAGGCAGTTGTTAGGTTAGATGGGTTCCTCATTTGCTCCCTTAAAACCAAGAAAAGTGGAGGGAAGAAAAAGGGATGATGTTTACTAGATAGAG

mRNA sequence

CGTCTCGTCTCTCTCTCTATATATTATATTCTTCGTTCTTCTTCACAGCCAAAACCAACTCCATCTCTCTCTCTCCACTGACTCTAAAATGGAGTCTACTGACACAAAATCCAGCCCGACTTCAACTCTTCTCCTTTCTCACTCCCCGTCGCCGTCTCCGTCTCCTTCACCGCCGCCGACTGTTCAGGCCCACGTGGTGGTCACTCCATGTGCGGCCTGCAAGATTCTGCGTCGGAGATGCACACAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTACAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCGCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGAAAAAGAAAAACTTGAGATTTCTAAGACAAAGGTTTTGGGAAGTCAAAGTTGGATTGGTTTTGAATAGAATATAGGAAAGTTAAGTAGTTGAATATTGGGTAATATTAGGCAGTTGTTAGGTTAGATGGGTTCCTCATTTGCTCCCTTAAAACCAAGAAAAGTGGAGGGAAGAAAAAGGGATGATGTTTACTAGATAGAG

Coding sequence (CDS)

ATGGAGTCTACTGACACAAAATCCAGCCCGACTTCAACTCTTCTCCTTTCTCACTCCCCGTCGCCGTCTCCGTCTCCTTCACCGCCGCCGACTGTTCAGGCCCACGTGGTGGTCACTCCATGTGCGGCCTGCAAGATTCTGCGTCGGAGATGCACACAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTTAAGTTCACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTACTTTTAGATCTTCCTGATTCACAAAGGGCGGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTACAGGGGCCATTTGTCAGCTTCAAAAACAGATAAATGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCGCCACCGATGTCATCATCATCGCTACTGCCGGAGCACCGCGCACTTGACAACAGTTTCAACATCGTCGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGGGGATAGCAATATTTGGGACCCTCTTTGGACATGA

Protein sequence

MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT*
Homology
BLAST of CSPI01G12880 vs. ExPASy Swiss-Prot
Match: Q9SK08 (LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 2.4e-49
Identity = 109/216 (50.46%), Postives = 139/216 (64.35%), Query Frame = 0

Query: 2   ESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYF 61
           E+T   +SP+ T     SP P PSP  PP  Q  VV++PCAACKILRRRC  KCVLAPYF
Sbjct: 23  ETTTPVNSPSPT----SSPPPPPSPQQPP--QPPVVLSPCAACKILRRRCADKCVLAPYF 82

Query: 62  PPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQ 121
           PP+DP KFTIAHR+FGASNIIK L +LP+SQR DAV+S+VYEA AR+RDPVYGC GAI  
Sbjct: 83  PPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYH 142

Query: 122 LQKQINELQAELAKTQAELVNIHCHQTNLVALICK-ELAQTPPPMSSSSLLPEHRALDNS 181
           LQ+Q++ELQA+LAKTQ ELV +   +++L+ LI   E  +          +    + ++ 
Sbjct: 143 LQRQVSELQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESG 202

Query: 182 FNIVATPQSYQGYTSLFGDSN--------IWDPLWT 209
              +++P           D+N         WDPLWT
Sbjct: 203 DEFISSPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

BLAST of CSPI01G12880 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.7e-48
Identity = 104/190 (54.74%), Postives = 131/190 (68.95%), Query Frame = 0

Query: 19  SPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGA 78
           +P  S S SPPP++   VV++PCAACKILRRRC ++CVLAPYFPP+DP KFTIAHR+FGA
Sbjct: 12  TPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGA 71

Query: 79  SNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQA 138
           SNIIK L +LP+SQR DAV+S+VYEA ARIRDPVYGC GAI  LQ+Q++ELQA+LAK Q 
Sbjct: 72  SNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQV 131

Query: 139 ELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNSFNIVATPQSYQGYTSLFG 198
           E+VN+   ++NL+ LI     Q      + S      + D  F      +S    + L+ 
Sbjct: 132 EMVNMQFQRSNLLELIYNMDQQQKQEQDNMSF----ESNDLGF---LEDKSNTNSSMLW- 189

Query: 199 DSNIWDPLWT 209
               WDPLWT
Sbjct: 192 ----WDPLWT 189

BLAST of CSPI01G12880 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.7e-35
Identity = 75/137 (54.74%), Postives = 97/137 (70.80%), Query Frame = 0

Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCAACK+LRRRC Q CV +PYFP  +P KF   HR+FGASN+ K+L +LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 99  SLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELVNIHCHQ-TNLVAL-ICK 158
           S+VYEA+AR+RDPVYGC GAI  LQ+QI+ LQA+LA  QAE+V++   Q TN     +C 
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLCP 131

Query: 159 ELAQTPPPMSSSSLLPE 174
           +   +    SS  + P+
Sbjct: 132 DSPSSSGSPSSKQVSPQ 148

BLAST of CSPI01G12880 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 7.5e-35
Identity = 66/105 (62.86%), Postives = 86/105 (81.90%), Query Frame = 0

Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCA+CK+LRRRC + C+ APYFPP DP KF I H++FGASN+ K+L +LP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 99  SLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELVNI 144
           SLV+EA+AR+RDPVYGC GAI  LQ Q+++LQ +LA  QAE++ I
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI 111

BLAST of CSPI01G12880 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-33
Identity = 66/118 (55.93%), Postives = 89/118 (75.42%), Query Frame = 0

Query: 24  PSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIK 83
           P   PP T+     +TPCAACK+LRRRC Q+C  +PYF P +P KF   H++FGASN+ K
Sbjct: 32  PMSGPPGTLN---TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSK 91

Query: 84  LLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELV 142
           +L+++P+SQRADA +SLVYEA+ R+RDPVYGC GAI  LQ+Q+  LQAEL   ++E++
Sbjct: 92  MLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEIL 146

BLAST of CSPI01G12880 vs. ExPASy TrEMBL
Match: A0A1S3CK12 (LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.8e-99
Identity = 190/208 (91.35%), Postives = 196/208 (94.23%), Query Frame = 0

Query: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60
           MES + KSSPTSTLL   S SPSPSPSPPPTVQA VVV+PCAACKILRRRC +KCVLAPY
Sbjct: 1   MESREVKSSPTSTLL---SQSPSPSPSPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPY 60

Query: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAIC 120
           FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGC GAIC
Sbjct: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 120

Query: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNS 180
           QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSS SLLP+HR+LDN+
Sbjct: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNN 180

Query: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 181 FNI-ATPQSYQGYTSLFEDSNIWDPLWT 204

BLAST of CSPI01G12880 vs. ExPASy TrEMBL
Match: A0A5D3CPB0 (LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00420 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.7e-88
Identity = 164/176 (93.18%), Postives = 170/176 (96.59%), Query Frame = 0

Query: 33  QAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 92
           +A VVV+PCAACKILRRRC +KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ
Sbjct: 5   EAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 64

Query: 93  RADAVSSLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVA 152
           RADAVSSLVYEASARIRDPVYGC GAICQLQKQINELQAELAKTQAELVNIHCHQTNLVA
Sbjct: 65  RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVA 124

Query: 153 LICKELAQTPPPMSSSSLLPEHRALDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           LICKELAQTPPPMSS SLLP+HR+LDN+FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 125 LICKELAQTPPPMSSLSLLPDHRSLDNNFNI-ATPQSYQGYTSLFEDSNIWDPLWT 179

BLAST of CSPI01G12880 vs. ExPASy TrEMBL
Match: A0A6J1DVT7 (LOB domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111024535 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 8.2e-85
Identity = 164/208 (78.85%), Postives = 181/208 (87.02%), Query Frame = 0

Query: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60
           ME ++ KS+ TST+L   S SPSPSP PPP++ A VVV+PCAACKILRRRC +KCVLAPY
Sbjct: 1   MECSEAKSNTTSTIL--RSQSPSPSPPPPPSIPAGVVVSPCAACKILRRRCAEKCVLAPY 60

Query: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAIC 120
           FPPSDP KFTIAHR+FGASNIIKLL DLP+SQRADAVSSLVYEASARIRDPVYGC GAIC
Sbjct: 61  FPPSDPFKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAIC 120

Query: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNS 180
           QLQKQINELQAELAKTQAELVN+HCHQ +LVALICKELAQTPPP+      P+HR+LDN+
Sbjct: 121 QLQKQINELQAELAKTQAELVNMHCHQASLVALICKELAQTPPPVPP----PDHRSLDNN 180

Query: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           FNI ATPQSYQ YT    DSNIW+PLWT
Sbjct: 181 FNI-ATPQSYQNYTPFLEDSNIWEPLWT 201

BLAST of CSPI01G12880 vs. ExPASy TrEMBL
Match: A0A0A0LS55 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G088450 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.5e-83
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0

Query: 52  TQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 111
           T KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP
Sbjct: 9   TMKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDP 68

Query: 112 VYGCTGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLL 171
           VYGC GAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLL
Sbjct: 69  VYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLL 128

Query: 172 PEHRALDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           PEHR+LDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 129 PEHRSLDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 165

BLAST of CSPI01G12880 vs. ExPASy TrEMBL
Match: A0A6J1I3T6 (LOB domain-containing protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469412 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 7.2e-81
Identity = 164/204 (80.39%), Postives = 176/204 (86.27%), Query Frame = 0

Query: 5   DTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPS 64
           D KSSPTST+  S SPS SP P PPP+VQA +VV+PCAACK LRRRCT+KCVLAPYFPPS
Sbjct: 2   DAKSSPTSTIFRSQSPSSSPLP-PPPSVQAGLVVSPCAACKTLRRRCTEKCVLAPYFPPS 61

Query: 65  DPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQLQK 124
           DPLKFTIAHRIFGASNIIKLL DLP+SQR DAVSSLVYEASARIRDPVYGC GAI QLQK
Sbjct: 62  DPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQK 121

Query: 125 QINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNSFNIV 184
           QINELQAELAKTQAELVNIH HQTNLVALICKELAQTPPP+S     P+H ALDN+ N  
Sbjct: 122 QINELQAELAKTQAELVNIHSHQTNLVALICKELAQTPPPVSP----PDHHALDNNLN-T 181

Query: 185 ATPQSYQGYTSLFGDSNIWDPLWT 209
           A PQS   YT+LF DS+IW+PLWT
Sbjct: 182 AIPQS---YTNLFEDSSIWEPLWT 196

BLAST of CSPI01G12880 vs. NCBI nr
Match: XP_004147299.1 (LOB domain-containing protein 1 [Cucumis sativus] >KAE8652739.1 hypothetical protein Csa_013406 [Cucumis sativus])

HSP 1 Score: 413.3 bits (1061), Expect = 1.2e-111
Identity = 206/208 (99.04%), Postives = 207/208 (99.52%), Query Frame = 0

Query: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60
           MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY
Sbjct: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60

Query: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAIC 120
           FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGC GAIC
Sbjct: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 120

Query: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNS 180
           QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHR+LDNS
Sbjct: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRSLDNS 180

Query: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           FNIVATPQSYQGYTSLFGDSNIWDPLWT
Sbjct: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 208

BLAST of CSPI01G12880 vs. NCBI nr
Match: XP_008463550.1 (PREDICTED: LOB domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 1.2e-98
Identity = 190/208 (91.35%), Postives = 196/208 (94.23%), Query Frame = 0

Query: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60
           MES + KSSPTSTLL   S SPSPSPSPPPTVQA VVV+PCAACKILRRRC +KCVLAPY
Sbjct: 1   MESREVKSSPTSTLL---SQSPSPSPSPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPY 60

Query: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAIC 120
           FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGC GAIC
Sbjct: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAIC 120

Query: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNS 180
           QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSS SLLP+HR+LDN+
Sbjct: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNN 180

Query: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 181 FNI-ATPQSYQGYTSLFEDSNIWDPLWT 204

BLAST of CSPI01G12880 vs. NCBI nr
Match: KAA0051926.1 (LOB domain-containing protein 1-like [Cucumis melo var. makuwa] >TYK12236.1 LOB domain-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 334.7 bits (857), Expect = 5.6e-88
Identity = 164/176 (93.18%), Postives = 170/176 (96.59%), Query Frame = 0

Query: 33  QAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 92
           +A VVV+PCAACKILRRRC +KCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ
Sbjct: 5   EAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQ 64

Query: 93  RADAVSSLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVA 152
           RADAVSSLVYEASARIRDPVYGC GAICQLQKQINELQAELAKTQAELVNIHCHQTNLVA
Sbjct: 65  RADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVA 124

Query: 153 LICKELAQTPPPMSSSSLLPEHRALDNSFNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           LICKELAQTPPPMSS SLLP+HR+LDN+FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 125 LICKELAQTPPPMSSLSLLPDHRSLDNNFNI-ATPQSYQGYTSLFEDSNIWDPLWT 179

BLAST of CSPI01G12880 vs. NCBI nr
Match: XP_038895012.1 (LOB domain-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 332.4 bits (851), Expect = 2.8e-87
Identity = 170/208 (81.73%), Postives = 182/208 (87.50%), Query Frame = 0

Query: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60
           ME  + KS   ST+ LS   SPS SPSPPP++Q  VVV+PCAACKILRRRC +KCVLAPY
Sbjct: 1   MECCEAKSGQASTIFLSQ--SPSSSPSPPPSIQTGVVVSPCAACKILRRRCAEKCVLAPY 60

Query: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAIC 120
           FPPSDPLKFTIAHR+FGASNIIKLL DLP+SQRADAVSSLVYEA+ARIRDPVYGC GAIC
Sbjct: 61  FPPSDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEANARIRDPVYGCAGAIC 120

Query: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNS 180
           QLQKQINELQAELAKTQAELVNIHC Q NLVALICKEL Q PPPMS    LP+HR+LDN+
Sbjct: 121 QLQKQINELQAELAKTQAELVNIHCRQANLVALICKELTQLPPPMSP---LPDHRSLDNN 180

Query: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           FNI ATPQSYQGYTSLF DSNIWDPLWT
Sbjct: 181 FNI-ATPQSYQGYTSLFEDSNIWDPLWT 202

BLAST of CSPI01G12880 vs. NCBI nr
Match: XP_022157927.1 (LOB domain-containing protein 11-like [Momordica charantia])

HSP 1 Score: 323.2 bits (827), Expect = 1.7e-84
Identity = 164/208 (78.85%), Postives = 181/208 (87.02%), Query Frame = 0

Query: 1   MESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPY 60
           ME ++ KS+ TST+L   S SPSPSP PPP++ A VVV+PCAACKILRRRC +KCVLAPY
Sbjct: 1   MECSEAKSNTTSTIL--RSQSPSPSPPPPPSIPAGVVVSPCAACKILRRRCAEKCVLAPY 60

Query: 61  FPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAIC 120
           FPPSDP KFTIAHR+FGASNIIKLL DLP+SQRADAVSSLVYEASARIRDPVYGC GAIC
Sbjct: 61  FPPSDPFKFTIAHRVFGASNIIKLLQDLPESQRADAVSSLVYEASARIRDPVYGCAGAIC 120

Query: 121 QLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNS 180
           QLQKQINELQAELAKTQAELVN+HCHQ +LVALICKELAQTPPP+      P+HR+LDN+
Sbjct: 121 QLQKQINELQAELAKTQAELVNMHCHQASLVALICKELAQTPPPVPP----PDHRSLDNN 180

Query: 181 FNIVATPQSYQGYTSLFGDSNIWDPLWT 209
           FNI ATPQSYQ YT    DSNIW+PLWT
Sbjct: 181 FNI-ATPQSYQNYTPFLEDSNIWEPLWT 201

BLAST of CSPI01G12880 vs. TAIR 10
Match: AT2G28500.1 (LOB domain-containing protein 11 )

HSP 1 Score: 196.8 bits (499), Expect = 1.7e-50
Identity = 109/216 (50.46%), Postives = 139/216 (64.35%), Query Frame = 0

Query: 2   ESTDTKSSPTSTLLLSHSPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYF 61
           E+T   +SP+ T     SP P PSP  PP  Q  VV++PCAACKILRRRC  KCVLAPYF
Sbjct: 23  ETTTPVNSPSPT----SSPPPPPSPQQPP--QPPVVLSPCAACKILRRRCADKCVLAPYF 82

Query: 62  PPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQ 121
           PP+DP KFTIAHR+FGASNIIK L +LP+SQR DAV+S+VYEA AR+RDPVYGC GAI  
Sbjct: 83  PPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYH 142

Query: 122 LQKQINELQAELAKTQAELVNIHCHQTNLVALICK-ELAQTPPPMSSSSLLPEHRALDNS 181
           LQ+Q++ELQA+LAKTQ ELV +   +++L+ LI   E  +          +    + ++ 
Sbjct: 143 LQRQVSELQAQLAKTQVELVGMQLQRSSLLELIYNMEQTKLSVQEQGQQKMSFESSFESG 202

Query: 182 FNIVATPQSYQGYTSLFGDSN--------IWDPLWT 209
              +++P           D+N         WDPLWT
Sbjct: 203 DEFISSPDEESNDLGFLEDNNNNNNSSMSWWDPLWT 232

BLAST of CSPI01G12880 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-49
Identity = 104/190 (54.74%), Postives = 131/190 (68.95%), Query Frame = 0

Query: 19  SPSPSPSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGA 78
           +P  S S SPPP++   VV++PCAACKILRRRC ++CVLAPYFPP+DP KFTIAHR+FGA
Sbjct: 12  TPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGA 71

Query: 79  SNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQA 138
           SNIIK L +LP+SQR DAV+S+VYEA ARIRDPVYGC GAI  LQ+Q++ELQA+LAK Q 
Sbjct: 72  SNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQV 131

Query: 139 ELVNIHCHQTNLVALICKELAQTPPPMSSSSLLPEHRALDNSFNIVATPQSYQGYTSLFG 198
           E+VN+   ++NL+ LI     Q      + S      + D  F      +S    + L+ 
Sbjct: 132 EMVNMQFQRSNLLELIYNMDQQQKQEQDNMSF----ESNDLGF---LEDKSNTNSSMLW- 189

Query: 199 DSNIWDPLWT 209
               WDPLWT
Sbjct: 192 ----WDPLWT 189

BLAST of CSPI01G12880 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 149.1 bits (375), Expect = 4.1e-36
Identity = 75/137 (54.74%), Postives = 97/137 (70.80%), Query Frame = 0

Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCAACK+LRRRC Q CV +PYFP  +P KF   HR+FGASN+ K+L +LP  QR DAVS
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 99  SLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELVNIHCHQ-TNLVAL-ICK 158
           S+VYEA+AR+RDPVYGC GAI  LQ+QI+ LQA+LA  QAE+V++   Q TN     +C 
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFPGHGLCP 131

Query: 159 ELAQTPPPMSSSSLLPE 174
           +   +    SS  + P+
Sbjct: 132 DSPSSSGSPSSKQVSPQ 148

BLAST of CSPI01G12880 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 148.7 bits (374), Expect = 5.3e-36
Identity = 66/105 (62.86%), Postives = 86/105 (81.90%), Query Frame = 0

Query: 39  TPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVS 98
           +PCA+CK+LRRRC + C+ APYFPP DP KF I H++FGASN+ K+L +LP  QRADAV+
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 99  SLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELVNI 144
           SLV+EA+AR+RDPVYGC GAI  LQ Q+++LQ +LA  QAE++ I
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI 111

BLAST of CSPI01G12880 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-34
Identity = 66/118 (55.93%), Postives = 89/118 (75.42%), Query Frame = 0

Query: 24  PSPSPPPTVQAHVVVTPCAACKILRRRCTQKCVLAPYFPPSDPLKFTIAHRIFGASNIIK 83
           P   PP T+     +TPCAACK+LRRRC Q+C  +PYF P +P KF   H++FGASN+ K
Sbjct: 32  PMSGPPGTLN---TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSK 91

Query: 84  LLLDLPDSQRADAVSSLVYEASARIRDPVYGCTGAICQLQKQINELQAELAKTQAELV 142
           +L+++P+SQRADA +SLVYEA+ R+RDPVYGC GAI  LQ+Q+  LQAEL   ++E++
Sbjct: 92  MLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEIL 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SK082.4e-4950.46LOB domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=LBD11 PE=2 S... [more]
Q9LQR02.7e-4854.74LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=... [more]
Q9SHE95.7e-3554.74LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=... [more]
Q8LBW37.5e-3562.86LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S... [more]
Q8L5T51.8e-3355.93LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S... [more]
Match NameE-valueIdentityDescription
A0A1S3CK125.8e-9991.35LOB domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501671 PE=... [more]
A0A5D3CPB02.7e-8893.18LOB domain-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A6J1DVT78.2e-8578.85LOB domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC11102... [more]
A0A0A0LS554.5e-8398.09LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G088450 PE=3 SV... [more]
A0A6J1I3T67.2e-8180.39LOB domain-containing protein 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
XP_004147299.11.2e-11199.04LOB domain-containing protein 1 [Cucumis sativus] >KAE8652739.1 hypothetical pro... [more]
XP_008463550.11.2e-9891.35PREDICTED: LOB domain-containing protein 1-like [Cucumis melo][more]
KAA0051926.15.6e-8893.18LOB domain-containing protein 1-like [Cucumis melo var. makuwa] >TYK12236.1 LOB ... [more]
XP_038895012.12.8e-8781.73LOB domain-containing protein 1-like [Benincasa hispida][more]
XP_022157927.11.7e-8478.85LOB domain-containing protein 11-like [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT2G28500.11.7e-5050.46LOB domain-containing protein 11 [more]
AT1G07900.11.9e-4954.74LOB domain-containing protein 1 [more]
AT1G31320.14.1e-3654.74LOB domain-containing protein 4 [more]
AT2G30130.15.3e-3662.86Lateral organ boundaries (LOB) domain family protein [more]
AT2G40470.11.3e-3455.93LOB domain-containing protein 15 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 119..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR31301:SF137LOB DOMAIN-CONTAINING PROTEIN 1coord: 29..207
NoneNo IPR availablePANTHERPTHR31301LOB DOMAIN-CONTAINING PROTEIN 4-RELATEDcoord: 29..207
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 40..137
e-value: 2.5E-40
score: 137.0
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 39..140
score: 26.332012

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G12880.1CSPI01G12880.1mRNA