CSPI01G06170 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G06170
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr1: 3877464 .. 3877790 (+)
RNA-Seq ExpressionCSPI01G06170
SyntenyCSPI01G06170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTAGCCACTTCCTTCCCACCGGCATGTTTCACAAACTCAGTTGGAGTAAGAAAGCTTCCATGGCATACACATACTATGCAGACTTGCCCTTTCATGTACTTGTACAAAAACCCTTCTACCTTCCTTCCGTTCGGCCCATCCCCGATTGTTGACACGCTTGGCATCGTTCTCATCACGTCCATCCCCTTATCCCCTTCCATCAATACCTTGGAAATTCTCGCTCTTTTTGCTGCATTTGTTGGTGGTTTTTCGGTTTTCCTTGATGCCATTGTTTGTGAGTTCACTACTGGCTCTCTGTCATTTGACTCCAGTGATGATTGA

mRNA sequence

ATGGGGTTAGCCACTTCCTTCCCACCGGCATGTTTCACAAACTCAGTTGGAGTAAGAAAGCTTCCATGGCATACACATACTATGCAGACTTGCCCTTTCATGTACTTGTACAAAAACCCTTCTACCTTCCTTCCGTTCGGCCCATCCCCGATTGTTGACACGCTTGGCATCGTTCTCATCACGTCCATCCCCTTATCCCCTTCCATCAATACCTTGGAAATTCTCGCTCTTTTTGCTGCATTTGTTGGTGGTTTTTCGGTTTTCCTTGATGCCATTGTTTGTGAGTTCACTACTGGCTCTCTGTCATTTGACTCCAGTGATGATTGA

Coding sequence (CDS)

ATGGGGTTAGCCACTTCCTTCCCACCGGCATGTTTCACAAACTCAGTTGGAGTAAGAAAGCTTCCATGGCATACACATACTATGCAGACTTGCCCTTTCATGTACTTGTACAAAAACCCTTCTACCTTCCTTCCGTTCGGCCCATCCCCGATTGTTGACACGCTTGGCATCGTTCTCATCACGTCCATCCCCTTATCCCCTTCCATCAATACCTTGGAAATTCTCGCTCTTTTTGCTGCATTTGTTGGTGGTTTTTCGGTTTTCCTTGATGCCATTGTTTGTGAGTTCACTACTGGCTCTCTGTCATTTGACTCCAGTGATGATTGA

Protein sequence

MGLATSFPPACFTNSVGVRKLPWHTHTMQTCPFMYLYKNPSTFLPFGPSPIVDTLGIVLITSIPLSPSINTLEILALFAAFVGGFSVFLDAIVCEFTTGSLSFDSSDD*
Homology
BLAST of CSPI01G06170 vs. ExPASy TrEMBL
Match: A0A2P5DB81 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_079190 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.3e-19
Identity = 50/81 (61.73%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1  MGLATSFPPACFTNSVGVRKLPWHTHTMQTCPFMYLYKNPSTFLPFGPSPIVDTLGIVLI 60
          +G  TS PPAC TNS G RKLPW T TM TCP +YLYKNPS  LP GPSP+V TLGI+LI
Sbjct: 4  IGFVTSLPPACLTNSAGERKLPWQTQTMLTCPLVYLYKNPSILLPLGPSPVVVTLGILLI 63

Query: 61 TSIPLSPSINTLEILALFAAF 82
          TS  LS      E+L+ F  F
Sbjct: 64 TSTQLSNVFLPFEVLSFFNGF 84

BLAST of CSPI01G06170 vs. ExPASy TrEMBL
Match: A0A2P5D8Q6 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_258780 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.3e-19
Identity = 49/81 (60.49%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1  MGLATSFPPACFTNSVGVRKLPWHTHTMQTCPFMYLYKNPSTFLPFGPSPIVDTLGIVLI 60
          +G  TS PPAC TNS G RKLPW T TM TCP +YLYKNPS  LP GPSP+V TLGI+ I
Sbjct: 4  IGFVTSLPPACLTNSAGERKLPWQTQTMLTCPLVYLYKNPSILLPLGPSPVVVTLGILFI 63

Query: 61 TSIPLSPSINTLEILALFAAF 82
          TS  LS +    E+L+ F  F
Sbjct: 64 TSTQLSKAFLPFEVLSFFNGF 84

BLAST of CSPI01G06170 vs. ExPASy TrEMBL
Match: A0A446QNW3 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_4Av1G021280 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.2e-08
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 1  MGLATSFPPACFTNSVGVRKLPWHTHTMQT-CPFMYLYKNPSTFLPFGPSPIVDTLGIVL 60
          +G ATS PPAC TNS GVRKLPWHTHT+ T    +Y Y+ PS   P G SP+V T GI  
Sbjct: 4  IGWATSPPPACATNSAGVRKLPWHTHTILTSSALLYWYRKPSILSPLG-SPLVYTTGIFR 63

Query: 61 ITSIPL 66
            S  L
Sbjct: 64 TMSATL 68

BLAST of CSPI01G06170 vs. ExPASy TrEMBL
Match: A0A3B6HQJ9 (Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.2e-08
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 1  MGLATSFPPACFTNSVGVRKLPWHTHTMQT-CPFMYLYKNPSTFLPFGPSPIVDTLGIVL 60
          +G ATS PPAC TNS GVRKLPWHTHT+ T    +Y Y+ PS   P G SP+V T GI  
Sbjct: 4  IGWATSPPPACATNSAGVRKLPWHTHTILTSSALLYWYRKPSILSPLG-SPLVYTTGIFR 63

Query: 61 ITSIPL 66
            S  L
Sbjct: 64 TMSATL 68

BLAST of CSPI01G06170 vs. ExPASy TrEMBL
Match: T1LXQ4 (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.2e-08
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 1  MGLATSFPPACFTNSVGVRKLPWHTHTMQT-CPFMYLYKNPSTFLPFGPSPIVDTLGIVL 60
          +G ATS PPAC TNS GVRKLPWHTHT+ T    +Y Y+ PS   P G SP+V T GI  
Sbjct: 4  IGWATSPPPACATNSAGVRKLPWHTHTILTSSALLYWYRKPSILSPLG-SPLVYTTGIFR 63

Query: 61 ITSIPL 66
            S  L
Sbjct: 64 TMSATL 68

BLAST of CSPI01G06170 vs. NCBI nr
Match: PON70545.1 (hypothetical protein PanWU01x14_079190 [Parasponia andersonii])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 50/81 (61.73%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1  MGLATSFPPACFTNSVGVRKLPWHTHTMQTCPFMYLYKNPSTFLPFGPSPIVDTLGIVLI 60
          +G  TS PPAC TNS G RKLPW T TM TCP +YLYKNPS  LP GPSP+V TLGI+LI
Sbjct: 4  IGFVTSLPPACLTNSAGERKLPWQTQTMLTCPLVYLYKNPSILLPLGPSPVVVTLGILLI 63

Query: 61 TSIPLSPSINTLEILALFAAF 82
          TS  LS      E+L+ F  F
Sbjct: 64 TSTQLSNVFLPFEVLSFFNGF 84

BLAST of CSPI01G06170 vs. NCBI nr
Match: PON69687.1 (hypothetical protein TorRG33x02_258780 [Trema orientale])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 49/81 (60.49%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1  MGLATSFPPACFTNSVGVRKLPWHTHTMQTCPFMYLYKNPSTFLPFGPSPIVDTLGIVLI 60
          +G  TS PPAC TNS G RKLPW T TM TCP +YLYKNPS  LP GPSP+V TLGI+ I
Sbjct: 4  IGFVTSLPPACLTNSAGERKLPWQTQTMLTCPLVYLYKNPSILLPLGPSPVVVTLGILFI 63

Query: 61 TSIPLSPSINTLEILALFAAF 82
          TS  LS +    E+L+ F  F
Sbjct: 64 TSTQLSKAFLPFEVLSFFNGF 84

BLAST of CSPI01G06170 vs. NCBI nr
Match: KAF3502924.1 (hypothetical protein F2Q69_00039652 [Brassica cretica])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 0

Query: 2   GLATSFPPACFTNSVGVRKLPWHTHTMQT-CPFMYLYKNPSTFLPFGPSPIVDTLGI 58
           G ATS PPAC TNS GVRKLPWHTHT+ T  PF+YLY+NPS FLP GPSP+VDT G+
Sbjct: 175 GRATSRPPACLTNSAGVRKLPWHTHTILTSSPFLYLYRNPSIFLPLGPSPVVDTHGM 231

BLAST of CSPI01G06170 vs. NCBI nr
Match: KAF7041590.1 (hypothetical protein CFC21_051367 [Triticum aestivum])

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-08
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 1  MGLATSFPPACFTNSVGVRKLPWHTHTMQT-CPFMYLYKNPSTFLPFGPSPIVDTLGIVL 60
          +G ATS PPAC TNS GVRKLPWHTHT+ T    +Y Y+ PS   P G SP+V T GI  
Sbjct: 4  IGWATSPPPACATNSAGVRKLPWHTHTILTSSALLYWYRKPSILSPLG-SPLVYTTGIFR 63

Query: 61 ITSIPL 66
            S  L
Sbjct: 64 TMSATL 68

BLAST of CSPI01G06170 vs. NCBI nr
Match: VAH88187.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-08
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 0

Query: 1  MGLATSFPPACFTNSVGVRKLPWHTHTMQT-CPFMYLYKNPSTFLPFGPSPIVDTLGIVL 60
          +G ATS PPAC TNS GVRKLPWHTHT+ T    +Y Y+ PS   P G SP+V T GI  
Sbjct: 4  IGWATSPPPACATNSAGVRKLPWHTHTILTSSALLYWYRKPSILSPLG-SPLVYTTGIFR 63

Query: 61 ITSIPL 66
            S  L
Sbjct: 64 TMSATL 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5DB815.3e-1961.73Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_079190 PE... [more]
A0A2P5D8Q65.3e-1960.49Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_258780 PE=4 SV... [more]
A0A446QNW34.2e-0856.06Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_4Av1G... [more]
A0A3B6HQJ94.2e-0856.06Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1[more]
T1LXQ44.2e-0856.06Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
PON70545.11.1e-1861.73hypothetical protein PanWU01x14_079190 [Parasponia andersonii][more]
PON69687.11.1e-1860.49hypothetical protein TorRG33x02_258780 [Trema orientale][more]
KAF3502924.11.9e-1573.68hypothetical protein F2Q69_00039652 [Brassica cretica][more]
KAF7041590.18.7e-0856.06hypothetical protein CFC21_051367 [Triticum aestivum][more]
VAH88187.18.7e-0856.06unnamed protein product [Triticum turgidum subsp. durum][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G06170.1CSPI01G06170.1mRNA