CSPI01G05000 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G05000
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	rho GDP-dissociation inhibitor 1-like
Location	Chr1: 3233452 .. 3233820 (-)
RNA-Seq Expression	CSPI01G05000
Synteny	CSPI01G05000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTGGGAAGAAGTTGAGGAGGAAGCAGTGTCTGTCTGCCAGAAAAGTCGATGAGTTCTGGCAGGAAAAGAAGAGTGAGGAATTAGAGGTTGATGATAAAGATGGGTTCACTCTAGGGCCTGTCCTTTCACTCAAGGAACAACTTGATAAGGACAAGGATGGTGAAAGCCTGAGAAGGTGGAAAGAAAAGTTGCTTGGTTGCTTAGAAAGAGTGAACAAAGGGAACCTGAAGTCAAGTTTCATTCCATTGGAATTATTTCTGATGAATTTGTGGAAGTCAATACTCCATTGCCTGTACAGGAAAATCAAAGTGGTCATGTTCTGTTTACTCGTCAAGAGGGATCTTGATATCAACTTTGGTTGA

mRNA sequence

ATGGAGGTTGGGAAGAAGTTGAGGAGGAAGCAGTGTCTGTCTGCCAGAAAAGTCGATGAGTTCTGGCAGGAAAAGAAGAGTGAGGAATTAGAGGTTGATGATAAAGATGGGTTCACTCTAGGGCCTGTCCTTTCACTCAAGGAACAACTTGATAAGGACAAGGATGGTGAAAGCCTGAGAAGGTGGAAAGAAAAGTTGCTTGGTTGCTTAGAAAGAGTGAACAAAGGGAACCTGAAGTCAAGTTTCATTCCATTGGAATTATTTCTGATGAATTTGTGGAAGTCAATACTCCATTGCCTGTACAGGAAAATCAAAGTGGTCATGTTCTGTTTACTCGTCAAGAGGGATCTTGATATCAACTTTGGTTGA

Coding sequence (CDS)

ATGGAGGTTGGGAAGAAGTTGAGGAGGAAGCAGTGTCTGTCTGCCAGAAAAGTCGATGAGTTCTGGCAGGAAAAGAAGAGTGAGGAATTAGAGGTTGATGATAAAGATGGGTTCACTCTAGGGCCTGTCCTTTCACTCAAGGAACAACTTGATAAGGACAAGGATGGTGAAAGCCTGAGAAGGTGGAAAGAAAAGTTGCTTGGTTGCTTAGAAAGAGTGAACAAAGGGAACCTGAAGTCAAGTTTCATTCCATTGGAATTATTTCTGATGAATTTGTGGAAGTCAATACTCCATTGCCTGTACAGGAAAATCAAAGTGGTCATGTTCTGTTTACTCGTCAAGAGGGATCTTGATATCAACTTTGGTTGA

Protein sequence

MEVGKKLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPVLSLKEQLDKDKDGESLRRWKEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMFCLLVKRDLDINFG*

Homology

[Close]

BLAST of CSPI01G05000 vs. ExPASy Swiss-Prot
Match: Q9SFC6 (Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 29  ELEVDDKDGFTLGPVLSLKEQLDKDKDGESLRRWKEKLLGCLERVNKG 77
           E E DD     LGP  ++KE L+KDKD ESLR+WKE+LLG ++  N G
Sbjct: 53  EEEEDDDSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIG 100

[Close]

BLAST of CSPI01G05000 vs. ExPASy TrEMBL
Match: A0A0A0LT43 (PH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G030680 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 2.3e-58
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 3   VGKKLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPVLSLKEQLDKDKDGESLRRW 62
           VGK+LRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGP+LSLKEQLDKDKDGESLRRW
Sbjct: 556 VGKQLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESLRRW 615

Query: 63  KEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMFCLLVKRDLDINFG 122
           KEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMF LLVKRDLDINFG
Sbjct: 616 KEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMFYLLVKRDLDINFG 675

[Close]

BLAST of CSPI01G05000 vs. ExPASy TrEMBL
Match: A0A0A0LC51 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G607630 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.9e-18
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MEVGKKLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPVLSLKEQLDKDKDGESL 60
          MEVGK+L  +    SA KVDEF  EK+SEE EVDDKDGFT GP+LSLKEQL+KDKD ESL
Sbjct: 1  MEVGKRLEEEAGPSSAGKVDEFRHEKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]

BLAST of CSPI01G05000 vs. ExPASy TrEMBL
Match: A0A5A7T594 (Rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G00040 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-18
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MEVGKKLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPVLSLKEQLDKDKDGESL 60
          MEVGK L  +    SA KVDEF +EK+SEE EVDDKDGFT GP+LSLKEQL+KDKD ESL
Sbjct: 1  MEVGKTLEEEAGPSSAGKVDEFRREKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]

BLAST of CSPI01G05000 vs. ExPASy TrEMBL
Match: A0A1S3BI82 (rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489856 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-18
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MEVGKKLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPVLSLKEQLDKDKDGESL 60
          MEVGK L  +    SA KVDEF +EK+SEE EVDDKDGFT GP+LSLKEQL+KDKD ESL
Sbjct: 1  MEVGKTLEEEAGPSSAGKVDEFRREKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]

BLAST of CSPI01G05000 vs. ExPASy TrEMBL
Match: A0A1S3BGS7 (rho GDP-dissociation inhibitor 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489856 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 6.6e-18
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MEVGKKLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPVLSLKEQLDKDKDGESL 60
          MEVGK L  +    SA KVDEF +EK+SEE EVDDKDGFT GP+LSLKEQL+KDKD ESL
Sbjct: 1  MEVGKTLEEEAGPSSAGKVDEFRREKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]

BLAST of CSPI01G05000 vs. NCBI nr
Match: KAE8652489.1 (hypothetical protein Csa_013953 [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 4.2e-59
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MEVGKKLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPVLSLKEQLDKDKDGESLR 60
           MEVGK+LRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGP+LSLKEQLDKDKDGESLR
Sbjct: 1   MEVGKQLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESLR 60

Query: 61  RWKEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMFCLLVKRDLDIN 120
           RWKEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMF LLVKRDLDIN
Sbjct: 61  RWKEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMFYLLVKRDLDIN 120

Query: 121 FG 123
           FG
Sbjct: 121 FG 122

[Close]

BLAST of CSPI01G05000 vs. NCBI nr
Match: XP_011651610.1 (rho GDP-dissociation inhibitor 1 [Cucumis sativus] >KGN58282.1 hypothetical protein Csa_017557 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 8.0e-18
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MEVGKKLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPVLSLKEQLDKDKDGESL 60
          MEVGK+L  +    SA KVDEF  EK+SEE EVDDKDGFT GP+LSLKEQL+KDKD ESL
Sbjct: 1  MEVGKRLEEEAGPSSAGKVDEFRHEKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]

BLAST of CSPI01G05000 vs. NCBI nr
Match: KAA0038008.1 (rho GDP-dissociation inhibitor 1-like isoform X1 [Cucumis melo var. makuwa] >TYK02202.1 rho GDP-dissociation inhibitor 1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-17
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MEVGKKLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPVLSLKEQLDKDKDGESL 60
          MEVGK L  +    SA KVDEF +EK+SEE EVDDKDGFT GP+LSLKEQL+KDKD ESL
Sbjct: 1  MEVGKTLEEEAGPSSAGKVDEFRREKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]

BLAST of CSPI01G05000 vs. NCBI nr
Match: XP_008447395.1 (PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-17
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MEVGKKLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPVLSLKEQLDKDKDGESL 60
          MEVGK L  +    SA KVDEF +EK+SEE EVDDKDGFT GP+LSLKEQL+KDKD ESL
Sbjct: 1  MEVGKTLEEEAGPSSAGKVDEFRREKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]

BLAST of CSPI01G05000 vs. NCBI nr
Match: XP_008447394.1 (PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-17
Identity = 55/72 (76.39%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MEVGKKLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPVLSLKEQLDKDKDGESL 60
          MEVGK L  +    SA KVDEF +EK+SEE EVDDKDGFT GP+LSLKEQL+KDKD ESL
Sbjct: 1  MEVGKTLEEEAGPSSAGKVDEFRREKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]

BLAST of CSPI01G05000 vs. TAIR 10
Match: AT1G62450.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-08
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 27 SEELEVDDKDGFTLGPVLSLKEQLDKDKDGESLRRWKEKLLGCLERVNKG 77
          +E+ E D+     LGP+++LKEQL++DKD ESLRRWKE+LLG ++  + G
Sbjct: 34 TEDDEEDEDKKLELGPMIALKEQLERDKDDESLRRWKEQLLGVVDLEDVG 83

[Close]

BLAST of CSPI01G05000 vs. TAIR 10
Match: AT1G12070.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 4  GKKLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPVLSLKEQLDKDKDGESLRRWK 63
          G+ L RK   S+    +  +E++ ++LE        LGP+++LKEQL+KDKD ESLRRWK
Sbjct: 19 GQGLSRKNSHSSMCPTDDDEEEEDKKLE--------LGPMIALKEQLEKDKDDESLRRWK 78

Query: 64 EKLLGCLERVNKGNLKSSFIPL 86
          E+LLG ++    G      + +
Sbjct: 79 EQLLGSVDLEEVGETPDPLVKI 92

[Close]

BLAST of CSPI01G05000 vs. TAIR 10
Match: AT3G07880.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 29  ELEVDDKDGFTLGPVLSLKEQLDKDKDGESLRRWKEKLLGCLERVNKG 77
           E E DD     LGP  ++KE L+KDKD ESLR+WKE+LLG ++  N G
Sbjct: 53  EEEEDDDSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIG 100

The following BLAST results are available for this feature:

BLAST of CSPI01G05000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFC6	1.5e-06	54.17	Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV...	[more]

BLAST of CSPI01G05000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT43	2.3e-58	97.50	PH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G030680 PE=3 SV=...	[more]
A0A0A0LC51	3.9e-18	76.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G607630 PE=3 SV=1	[more]
A0A5A7T594	6.6e-18	76.39	Rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BI82	6.6e-18	76.39	rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S3BGS7	6.6e-18	76.39	rho GDP-dissociation inhibitor 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of CSPI01G05000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652489.1	4.2e-59	97.54	hypothetical protein Csa_013953 [Cucumis sativus]	[more]
XP_011651610.1	8.0e-18	76.39	rho GDP-dissociation inhibitor 1 [Cucumis sativus] >KGN58282.1 hypothetical prot...	[more]
KAA0038008.1	1.4e-17	76.39	rho GDP-dissociation inhibitor 1-like isoform X1 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008447395.1	1.4e-17	76.39	PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X2 [Cucumis melo]	[more]
XP_008447394.1	1.4e-17	76.39	PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X1 [Cucumis melo]	[more]

BLAST of CSPI01G05000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62450.1	3.6e-08	52.00	Immunoglobulin E-set superfamily protein	[more]
AT1G12070.1	1.0e-07	39.02	Immunoglobulin E-set superfamily protein	[more]
AT3G07880.1	1.0e-07	54.17	Immunoglobulin E-set superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024792	Rho GDP-dissociation inhibitor domain superfamily	GENE3D	2.70.50.30	Coagulation Factor XIII, subunit A, domain 1	coord: 36..92 e-value: 4.5E-7 score: 31.9
IPR000406	Rho protein GDP-dissociation inhibitor	PFAM	PF02115	Rho_GDI	coord: 24..71 e-value: 1.5E-10 score: 41.2
IPR000406	Rho protein GDP-dissociation inhibitor	PANTHER	PTHR10980	RHO GDP-DISSOCIATION INHIBITOR	coord: 16..74
None	No IPR available	PANTHER	PTHR10980:SF49	RHO GDP-DISSOCIATION INHIBITOR 1-LIKE	coord: 16..74
IPR014756	Immunoglobulin E-set	SUPERFAMILY	81296	E set domains	coord: 18..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G05000.1	CSPI01G05000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0007266	Rho protein signal transduction
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016020	membrane
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005094	Rho GDP-dissociation inhibitor activity