Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCAGACAAATATGTGCAACCAGCAATTCCTCGCTTTGATGGTCATTATGATCATTAGAGCATGTTGATGGAGAATTTCTTACGGTCCAAAGAGTACTGGACCATTGTTGAAGCAGGAGTGAATGAACCAGCTACTGGAGTTGTCTTGTCAGAAGTTGACCAAAAGAAGCTAGAGGAACGAAAATTGAAGGATCTCAAGGCAAAGAATTATTTATTTCAAGCCATTGATCGTACCATCTTGGAGACCATTTCGCAAAAGGATACATGCAAGCAAATTTGGGACTCCATGAAGAAAAAGTATCAAGACACAACGAGGGTGAAAAGACAGCAGCTCCAAGCTCTTCGCAAAGAGTTCGAGATTCTTAAAATGAAGCAAAGTGAGTCCGTGGATGGGTATTTGTCACGGGCCTTGGATATAGAAAACAAAATGCATATCTATGGAGAAAAGATTGAAGATGTAGTTGTGGTTGAAAAGATTCTTCGATCGATGGATTCTAAATTTGTATATGTGGTTTGTTCAATTGAGGAATCAAAAAATATTGATACATTATCAATTGATGAATTACAAAGTTCTTTACTT
mRNA sequence
ATGGCCTCAGACAAATATGTGCAACCAGCAATTCCTCGCTTTGATGAGTACTGGACCATTGTTGAAGCAGGAGTGAATGAACCAGCTACTGGAGTTGTCTTGTCAGAAGTTGACCAAAAGAAGCTAGAGGAACGAAAATTGAAGGATCTCAAGGCAAAGAATTATTTATTTCAAGCCATTGATCGTACCATCTTGGAGACCATTTCGCAAAAGGATACATGCAAGCAAATTTGGGACTCCATGAAGAAAAAGTATCAAGACACAACGAGGGTGAAAAGACAGCAGCTCCAAGCTCTTCGCAAAGAGTTCGAGATTCTTAAAATGAAGCAAAGTGAGTCCGTGGATGGGTATTTGTCACGGGCCTTGGATATAGAAAACAAAATGCATATCTATGGAGAAAAGATTGAAGATGTAGTTGTGGTTGAAAAGATTCTTCGATCGATGGATTCTAAATTTGTATATGTGGTTTGTTCAATTGAGGAATCAAAAAATATTGATACATTATCAATTGATGAATTACAAAGTTCTTTACTT
Coding sequence (CDS)
ATGGCCTCAGACAAATATGTGCAACCAGCAATTCCTCGCTTTGATGAGTACTGGACCATTGTTGAAGCAGGAGTGAATGAACCAGCTACTGGAGTTGTCTTGTCAGAAGTTGACCAAAAGAAGCTAGAGGAACGAAAATTGAAGGATCTCAAGGCAAAGAATTATTTATTTCAAGCCATTGATCGTACCATCTTGGAGACCATTTCGCAAAAGGATACATGCAAGCAAATTTGGGACTCCATGAAGAAAAAGTATCAAGACACAACGAGGGTGAAAAGACAGCAGCTCCAAGCTCTTCGCAAAGAGTTCGAGATTCTTAAAATGAAGCAAAGTGAGTCCGTGGATGGGTATTTGTCACGGGCCTTGGATATAGAAAACAAAATGCATATCTATGGAGAAAAGATTGAAGATGTAGTTGTGGTTGAAAAGATTCTTCGATCGATGGATTCTAAATTTGTATATGTGGTTTGTTCAATTGAGGAATCAAAAAATATTGATACATTATCAATTGATGAATTACAAAGTTCTTTACTT
Protein sequence
MASDKYVQPAIPRFDEYWTIVEAGVNEPATGVVLSEVDQKKLEERKLKDLKAKNYLFQAIDRTILETISQKDTCKQIWDSMKKKYQDTTRVKRQQLQALRKEFEILKMKQSESVDGYLSRALDIENKMHIYGEKIEDVVVVEKILRSMDSKFVYVVCSIEESKNIDTLSIDELQSSLL
Homology
BLAST of Bhi12G002301 vs. TAIR 10
Match:
AT3G21000.1 (Gag-Pol-related retrotransposon family protein )
HSP 1 Score: 43.9 bits (102), Expect = 1.6e-04
Identity = 35/163 (21.47%), Postives = 71/163 (43.56%), Query Frame = 0
Query: 18 WTIVEAGV-----NEPATGVVLSEVDQKKLEERKLKDLKAKNYLFQAIDRTILETISQKD 77
W +V GV P + + K + +KD KA L ++ ++
Sbjct: 34 WDVVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKALQILQSSLTDSVFRKTLSAS 93
Query: 78 TCKQIWDSMKKKYQDTT--RVKRQQLQALRKEFEILKMKQSESVDGYLSRALDIENKMHI 137
+ K +WD ++K + T R+++ ++ L K+ E LKM ES YL +AL+I ++
Sbjct: 94 SAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLKMVDKESGSSYLDKALEILERLGR 153
Query: 138 YGEKIEDVVVVEKILRSMDSKFVYVVCSIEESKNIDTLSIDEL 174
+ D + + + ++ F + +EE ++ ++ L
Sbjct: 154 AKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKSL 196
BLAST of Bhi12G002301 vs. NCBI nr
Match:
TXG72705.1 (hypothetical protein EZV62_001284 [Acer yangbiense])
HSP 1 Score: 242.7 bits (618), Expect = 2.5e-60
Identity = 132/195 (67.69%), Postives = 149/195 (76.41%), Query Frame = 0
Query: 1 MASDKYVQPAIPRFD-----------------EYWTIVEAGVNEPATGVVLSEVDQKKLE 60
M ++ +VQP+IPRFD EYW IVE G+ EPA VL+E QKKL+
Sbjct: 1 MYNNNFVQPSIPRFDGQYDHWSMLMENFLRSKEYWIIVETGIKEPAQDEVLTEAQQKKLD 60
Query: 61 ERKLKDLKAKNYLFQAIDRTILETISQKDTCKQIWDSMKKKYQDTTRVKRQQLQALRKEF 120
E KLKDLKAKNYLFQAIDR ILETI QKDT KQIWDSMK+KY +TRVKRQQLQALRK+F
Sbjct: 61 ELKLKDLKAKNYLFQAIDRAILETILQKDTSKQIWDSMKRKYAGSTRVKRQQLQALRKDF 120
Query: 121 EILKMKQSESVDGYLSRALDIENKMHIYGEKIEDVVVVEKILRSMDSKFVYVVCSIEESK 179
EIL MK+ ESVD Y SR L I NKM I+G +++DV V+EKILRSM KF YVVCSIEESK
Sbjct: 121 EILHMKEGESVDEYFSRTLTIVNKMRIHGGQMDDVAVIEKILRSMSPKFAYVVCSIEESK 180
BLAST of Bhi12G002301 vs. NCBI nr
Match:
PRQ21321.1 (putative RNA-directed DNA polymerase [Rosa chinensis])
HSP 1 Score: 234.2 bits (596), Expect = 8.8e-58
Identity = 126/190 (66.32%), Postives = 146/190 (76.84%), Query Frame = 0
Query: 6 YVQPAIPRFD-----------------EYWTIVEAGVNEPATGVVLSEVDQKKLEERKLK 65
+VQP+IP+FD EYW +VE V EPA GV +EV QKKLEE KLK
Sbjct: 7 FVQPSIPKFDGHYDHWSMLMENFMRSKEYWCVVENEVREPAAGVAQTEVQQKKLEELKLK 66
Query: 66 DLKAKNYLFQAIDRTILETISQKDTCKQIWDSMKKKYQDTTRVKRQQLQALRKEFEILKM 125
DLKAKNYLFQAIDR +LETI QKDT KQIWD+MK+KYQ +TRVKRQQLQALRKEFE+L M
Sbjct: 67 DLKAKNYLFQAIDRDLLETILQKDTSKQIWDAMKQKYQRSTRVKRQQLQALRKEFEVLHM 126
Query: 126 KQSESVDGYLSRALDIENKMHIYGEKIEDVVVVEKILRSMDSKFVYVVCSIEESKNIDTL 179
K+ ESVD Y SR L I NKM ++G K+E+V VVEK+LRSM SKF YVVCSIEESKN++ +
Sbjct: 127 KEGESVDEYFSRTLSIANKMSVHGGKLENVAVVEKVLRSMTSKFDYVVCSIEESKNVEEM 186
BLAST of Bhi12G002301 vs. NCBI nr
Match:
XP_008245036.1 (PREDICTED: uncharacterized protein LOC103343139 [Prunus mume])
HSP 1 Score: 233.4 bits (594), Expect = 1.5e-57
Identity = 128/196 (65.31%), Postives = 150/196 (76.53%), Query Frame = 0
Query: 1 MASDK----YVQPAIPRFD-----------------EYWTIVEAGVNEPATGVVLSEVDQ 60
MASDK YVQPAIP FD EYWT+VE G+ EP +GVVL+E+ Q
Sbjct: 1 MASDKVTDNYVQPAIPCFDGHYDHWSMLMENFLRSKEYWTLVETGIVEPESGVVLTELQQ 60
Query: 61 KKLEERKLKDLKAKNYLFQAIDRTILETISQKDTCKQIWDSMKKKYQDTTRVKRQQLQAL 120
KKL+E KLKDLKAKNYLFQAID +ILETI QKDT KQIWDSMKKKYQ +T+VKR LQAL
Sbjct: 61 KKLDESKLKDLKAKNYLFQAIDCSILETILQKDTSKQIWDSMKKKYQGSTKVKRSMLQAL 120
Query: 121 RKEFEILKMKQSESVDGYLSRALDIENKMHIYGEKIEDVVVVEKILRSMDSKFVYVVCSI 176
RK+FE L+MKQ ESV+ Y S+A+ I NKM I+GEK+EDV +VEKILRSM +KF YVVCSI
Sbjct: 121 RKDFETLQMKQGESVNDYFSKAMAIANKMSIHGEKMEDVTIVEKILRSMTTKFDYVVCSI 180
BLAST of Bhi12G002301 vs. NCBI nr
Match:
MCI13496.1 (resistance-like protein [Trifolium medium])
HSP 1 Score: 231.1 bits (588), Expect = 7.5e-57
Identity = 124/190 (65.26%), Postives = 143/190 (75.26%), Query Frame = 0
Query: 6 YVQPAIPRFD-----------------EYWTIVEAGVNEPATGVVLSEVDQKKLEERKLK 65
+VQPAIPRFD EYWT+VE G+ EPA+ L+E +K L++++LK
Sbjct: 1 FVQPAIPRFDGHYDHWSMLMENFLKSKEYWTLVETGITEPASETALTEAQKKTLDDQRLK 60
Query: 66 DLKAKNYLFQAIDRTILETISQKDTCKQIWDSMKKKYQDTTRVKRQQLQALRKEFEILKM 125
DLKAKNYLFQA DR +LETI +KDT K IWDSMKKKYQ T RVKR QLQALRKEFEIL M
Sbjct: 61 DLKAKNYLFQAXDRAVLETILKKDTAKDIWDSMKKKYQGTARVKRAQLQALRKEFEILHM 120
Query: 126 KQSESVDGYLSRALDIENKMHIYGEKIEDVVVVEKILRSMDSKFVYVVCSIEESKNIDTL 179
K+ ESV+ Y SR L I NKM I G+K+EDV V+EKILRSM KF YVVCSIEES +ID+L
Sbjct: 121 KEGESVNDYFSRTLSIANKMRINGDKLEDVAVIEKILRSMTRKFDYVVCSIEESNDIDSL 180
BLAST of Bhi12G002301 vs. NCBI nr
Match:
XP_027152457.1 (uncharacterized protein LOC113752541 [Coffea eugenioides] >XP_027157388.1 uncharacterized protein LOC113758911 [Coffea eugenioides])
HSP 1 Score: 227.3 bits (578), Expect = 1.1e-55
Identity = 122/195 (62.56%), Postives = 143/195 (73.33%), Query Frame = 0
Query: 1 MASDKYVQPAIPRFD-----------------EYWTIVEAGVNEPATGVVLSEVDQKKLE 60
MA D +VQPAIPRFD EYW ++E+GV EP G +LSEV + +LE
Sbjct: 1 MAIDNFVQPAIPRFDGHYDHWSMLMENFLRSKEYWQVIESGVAEPTIGEILSEVQKMELE 60
Query: 61 ERKLKDLKAKNYLFQAIDRTILETISQKDTCKQIWDSMKKKYQDTTRVKRQQLQALRKEF 120
KLKDLKAKNYLFQAIDRTILETI KDT KQ+WDSMKKKYQ + +R QLQALR EF
Sbjct: 61 ALKLKDLKAKNYLFQAIDRTILETILSKDTSKQVWDSMKKKYQGNAKAQRVQLQALRTEF 120
Query: 121 EILKMKQSESVDGYLSRALDIENKMHIYGEKIEDVVVVEKILRSMDSKFVYVVCSIEESK 179
E L+MK SESV Y +R + I NKM I+GE ++D +VEKILRSM +KF +VVC IEESK
Sbjct: 121 ETLRMKSSESVTDYFARTMAIANKMRIHGENLKDATIVEKILRSMTTKFNFVVCCIEESK 180
BLAST of Bhi12G002301 vs. ExPASy TrEMBL
Match:
A0A5C7IU47 (Integrase catalytic domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_001284 PE=4 SV=1)
HSP 1 Score: 242.7 bits (618), Expect = 1.2e-60
Identity = 132/195 (67.69%), Postives = 149/195 (76.41%), Query Frame = 0
Query: 1 MASDKYVQPAIPRFD-----------------EYWTIVEAGVNEPATGVVLSEVDQKKLE 60
M ++ +VQP+IPRFD EYW IVE G+ EPA VL+E QKKL+
Sbjct: 1 MYNNNFVQPSIPRFDGQYDHWSMLMENFLRSKEYWIIVETGIKEPAQDEVLTEAQQKKLD 60
Query: 61 ERKLKDLKAKNYLFQAIDRTILETISQKDTCKQIWDSMKKKYQDTTRVKRQQLQALRKEF 120
E KLKDLKAKNYLFQAIDR ILETI QKDT KQIWDSMK+KY +TRVKRQQLQALRK+F
Sbjct: 61 ELKLKDLKAKNYLFQAIDRAILETILQKDTSKQIWDSMKRKYAGSTRVKRQQLQALRKDF 120
Query: 121 EILKMKQSESVDGYLSRALDIENKMHIYGEKIEDVVVVEKILRSMDSKFVYVVCSIEESK 179
EIL MK+ ESVD Y SR L I NKM I+G +++DV V+EKILRSM KF YVVCSIEESK
Sbjct: 121 EILHMKEGESVDEYFSRTLTIVNKMRIHGGQMDDVAVIEKILRSMSPKFAYVVCSIEESK 180
BLAST of Bhi12G002301 vs. ExPASy TrEMBL
Match:
A0A2P6PHB2 (Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0237911 PE=4 SV=1)
HSP 1 Score: 234.2 bits (596), Expect = 4.3e-58
Identity = 126/190 (66.32%), Postives = 146/190 (76.84%), Query Frame = 0
Query: 6 YVQPAIPRFD-----------------EYWTIVEAGVNEPATGVVLSEVDQKKLEERKLK 65
+VQP+IP+FD EYW +VE V EPA GV +EV QKKLEE KLK
Sbjct: 7 FVQPSIPKFDGHYDHWSMLMENFMRSKEYWCVVENEVREPAAGVAQTEVQQKKLEELKLK 66
Query: 66 DLKAKNYLFQAIDRTILETISQKDTCKQIWDSMKKKYQDTTRVKRQQLQALRKEFEILKM 125
DLKAKNYLFQAIDR +LETI QKDT KQIWD+MK+KYQ +TRVKRQQLQALRKEFE+L M
Sbjct: 67 DLKAKNYLFQAIDRDLLETILQKDTSKQIWDAMKQKYQRSTRVKRQQLQALRKEFEVLHM 126
Query: 126 KQSESVDGYLSRALDIENKMHIYGEKIEDVVVVEKILRSMDSKFVYVVCSIEESKNIDTL 179
K+ ESVD Y SR L I NKM ++G K+E+V VVEK+LRSM SKF YVVCSIEESKN++ +
Sbjct: 127 KEGESVDEYFSRTLSIANKMSVHGGKLENVAVVEKVLRSMTSKFDYVVCSIEESKNVEEM 186
BLAST of Bhi12G002301 vs. ExPASy TrEMBL
Match:
A0A392PQB8 (Resistance-like protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1)
HSP 1 Score: 231.1 bits (588), Expect = 3.6e-57
Identity = 124/190 (65.26%), Postives = 143/190 (75.26%), Query Frame = 0
Query: 6 YVQPAIPRFD-----------------EYWTIVEAGVNEPATGVVLSEVDQKKLEERKLK 65
+VQPAIPRFD EYWT+VE G+ EPA+ L+E +K L++++LK
Sbjct: 1 FVQPAIPRFDGHYDHWSMLMENFLKSKEYWTLVETGITEPASETALTEAQKKTLDDQRLK 60
Query: 66 DLKAKNYLFQAIDRTILETISQKDTCKQIWDSMKKKYQDTTRVKRQQLQALRKEFEILKM 125
DLKAKNYLFQA DR +LETI +KDT K IWDSMKKKYQ T RVKR QLQALRKEFEIL M
Sbjct: 61 DLKAKNYLFQAXDRAVLETILKKDTAKDIWDSMKKKYQGTARVKRAQLQALRKEFEILHM 120
Query: 126 KQSESVDGYLSRALDIENKMHIYGEKIEDVVVVEKILRSMDSKFVYVVCSIEESKNIDTL 179
K+ ESV+ Y SR L I NKM I G+K+EDV V+EKILRSM KF YVVCSIEES +ID+L
Sbjct: 121 KEGESVNDYFSRTLSIANKMRINGDKLEDVAVIEKILRSMTRKFDYVVCSIEESNDIDSL 180
BLAST of Bhi12G002301 vs. ExPASy TrEMBL
Match:
A0A2N9FH80 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14337 PE=4 SV=1)
HSP 1 Score: 228.4 bits (581), Expect = 2.3e-56
Identity = 119/194 (61.34%), Postives = 146/194 (75.26%), Query Frame = 0
Query: 2 ASDKYVQPAIPRFD-----------------EYWTIVEAGVNEPATGVVLSEVDQKKLEE 61
A + +VQPAIP+FD EYW++VE G+ A GV L+E QK + +
Sbjct: 3 AENNFVQPAIPKFDGHYDHWSMLMENFLRSKEYWSLVETGIPAAAEGVELTEAQQKSIAD 62
Query: 62 RKLKDLKAKNYLFQAIDRTILETISQKDTCKQIWDSMKKKYQDTTRVKRQQLQALRKEFE 121
+KLKDLK KNYLFQAIDRTI+ETI +DT K IWDSMK+KYQ +TRVKR QLQALRKEFE
Sbjct: 63 QKLKDLKVKNYLFQAIDRTIMETILNRDTAKHIWDSMKQKYQGSTRVKRAQLQALRKEFE 122
Query: 122 ILKMKQSESVDGYLSRALDIENKMHIYGEKIEDVVVVEKILRSMDSKFVYVVCSIEESKN 179
+L+MK+ ESVD Y +R L I NKM I+GE ++ VV++EKILRSM S+F YVVCS+EES N
Sbjct: 123 VLQMKEGESVDAYFARTLIIANKMKIHGENMQQVVIIEKILRSMTSRFDYVVCSVEESNN 182
BLAST of Bhi12G002301 vs. ExPASy TrEMBL
Match:
A0A438G9J8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2628 PE=4 SV=1)
HSP 1 Score: 226.1 bits (575), Expect = 1.2e-55
Identity = 122/195 (62.56%), Postives = 143/195 (73.33%), Query Frame = 0
Query: 1 MASDKYVQPAIPRFD-----------------EYWTIVEAGVNEPATGVVLSEVDQKKLE 60
MAS+ +VQPAIPRFD EYW +V G+ EPAT +++ + +E
Sbjct: 1 MASENFVQPAIPRFDGHYDYWSMLMENFLRSKEYWQVVSKGIAEPATNSPMTDAQKTNIE 60
Query: 61 ERKLKDLKAKNYLFQAIDRTILETISQKDTCKQIWDSMKKKYQDTTRVKRQQLQALRKEF 120
R+LKDLK KNYLFQAIDR+ILETI KDT +QIWDSMKKKYQ +TR KRQQLQALR EF
Sbjct: 61 GRRLKDLKTKNYLFQAIDRSILETILCKDTSQQIWDSMKKKYQGSTRTKRQQLQALRSEF 120
Query: 121 EILKMKQSESVDGYLSRALDIENKMHIYGEKIEDVVVVEKILRSMDSKFVYVVCSIEESK 179
E+L+MK ESV Y SR + I NKM I+GEK+EDV V+EKILRSM KF YVVCSIEESK
Sbjct: 121 EMLRMKPGESVSDYFSRTMAIINKMRIHGEKMEDVTVIEKILRSMTPKFNYVVCSIEESK 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
AT3G21000.1 | 1.6e-04 | 21.47 | Gag-Pol-related retrotransposon family protein | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
TXG72705.1 | 2.5e-60 | 67.69 | hypothetical protein EZV62_001284 [Acer yangbiense] | [more] |
PRQ21321.1 | 8.8e-58 | 66.32 | putative RNA-directed DNA polymerase [Rosa chinensis] | [more] |
XP_008245036.1 | 1.5e-57 | 65.31 | PREDICTED: uncharacterized protein LOC103343139 [Prunus mume] | [more] |
MCI13496.1 | 7.5e-57 | 65.26 | resistance-like protein [Trifolium medium] | [more] |
XP_027152457.1 | 1.1e-55 | 62.56 | uncharacterized protein LOC113752541 [Coffea eugenioides] >XP_027157388.1 unchar... | [more] |
Match Name | E-value | Identity | Description | |
A0A5C7IU47 | 1.2e-60 | 67.69 | Integrase catalytic domain-containing protein OS=Acer yangbiense OX=1000413 GN=E... | [more] |
A0A2P6PHB2 | 4.3e-58 | 66.32 | Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7... | [more] |
A0A392PQB8 | 3.6e-57 | 65.26 | Resistance-like protein (Fragment) OS=Trifolium medium OX=97028 PE=4 SV=1 | [more] |
A0A2N9FH80 | 2.3e-56 | 61.34 | Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... | [more] |
A0A438G9J8 | 1.2e-55 | 62.56 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |