Bhi12G002266 (gene) Wax gourd (B227) v1

Overview


Name	Bhi12G002266
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	upstream activation factor subunit spp27-like
Location	chr12: 79951437 .. 79953416 (-)
RNA-Seq Expression	Bhi12G002266
Synteny	Bhi12G002266

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCATTTCTATTGGGCGGCCAATTCCGTCAGCTCATTCTGCGCTCGAGTTTCCATTTCTTCAACCTCGATCGAGCATAGGCGGCGAAAACCCCTGCACTCACCGTCGTCTTTCTCGGAGCAAAATGGCCTCAGGTCGCAATGGCACCAGGTTCTTCAGAGGTTGCAGAACCCTCTTTGATTCTCTCAAATCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTGCCAAGGGGAAGCTAAAAGCCTCAAATACCGCCGTTTCGGGCCAAAAATCGGTAGCCGGACCAAAGAAAGTGGTGAATCGTTCGACGGGAATTTTTAAGTCCTTCCCAGTTTCTCCGGCTCTCGCTGGCTTCCTTGGCATGTCCGAGACTTCGCGTTCCGAAGCCGTCAAACAAATATGGGCCTACATCAAGCTGAATAACCTCCAGGTTACTTTGATTTCTCTATTGTTCTTACTTATATAGCCTTTGTTTTTTTTAGTATCGTTGTTCTAGTTCCTTGTTTCCTGCCATCTCTTCGTTTGCCTAGTTAATGTCTTCTTGATTGTAAGTTAGCTTAGTGCTTGAGATTTTGGGTGTTGTGTTCGTTTCGTAAAGTATTAAATGTTAGTCCTCTGTGAGCCGATTCTCTCTTTCAGTCTTCATTTGCTGAATCAAAGGTCTCTGAAATGGGAGTTCTGAATTTGAAAATTAGGTGAAATTATAGGTGAACCCTCACCATGTTATAGTCCATGAATCAAATTATCTTTAGACTAGAGGGATTAAATCCATACCTGTTCCCAAGTTTCAATTGCCTCGAGTAATCAGCCGACTATTCTGGCCATGAATGGATTTATTCAGCAATGTCGTTTAAAGGATTGAATGCTACTGTGTGACATTTTCTTTTCACGTGGATTTGGGTTTGATCTCTGCTCTGAAAAAGTTAGCTACTACATAGAGCTGGGAACACCTACCAAAATCCCCCTGATGTCCAATTTTTGGGTATATACTTTCATTGAAGTTCATGAAAGGCTAAACCAGGATATGCCGTCTCTTACCAAATGAAATGGGAATGTTGGCCATGCGTTTCTGAAGGGTGTGTGGTGAATTTTCAGATGCACAGATCATCTAGCAAAAGAAGCTTCAGCTTCTCTCACCTTGCCCTATCATGTGATGTTTCTTTTGAAACACCCTAGAAGTGAACTACTTTAGCTTGTCATTGCTCATCAATTGAAATTGTGGTTGAATGGGAATGAAAATGATAGTAAATGTGTCACTATATTGTTGATGTTGAGTAGTTGGAACTGTAGTTGTCTCATGTTCTGCCACACCCAAACCAATCCAGTCAGAATTTATCTAATGGGGCATGTCATGCTACTATCCTATTAATGGTGTTAACTGTAAAGATCAAGTGTTAATCCTCATTGTATATGAGCTGAAACTAGAATTTAACATAGTATTACTTTTCTTTTGGGAGTTTGGAAGATTTTGCTGATTGATACATATATATATACATACACATTTTGGTGTGCAGAGCCCAGCTGACAAGAGGCAGATCAATTGTGATGAAAAGCTGAAGGCTATATTTGATGGAAGAGAGAAGGTGGGATTCTTAGAGATTGGAAAATTGCTAACCCCTCATTTTGTGAAATCTAGTTAACCTTAAACTTCCAGTGCATGCACTGGCTTAGTTGTTCTAACTGTTCTTTCTCAACCTGTCTTCCAAATCCTTGATGTTGTTTTCTTATGTTGTGTTTTTTTTGGTTAATCCTATGACTTCACCTTTACTCTTTTGTTTGTAAAGGGGGTATGCTATTCCAAACAAACTTTGGATAAGGAAATAGAAGTAGTGATGCTTGTGTGCTTAAAATTGCTATTCCTAGTCTCATTATTTCAAAGGTAAATGCATATTTATCAATAGGTTAAATGGTAAATGTAATTGCCAAATTGAGGCTGGAGGCTTGATTCACATTCCTGCAATTGTTTGTACCAAAC

mRNA sequence

CCCATTTCTATTGGGCGGCCAATTCCGTCAGCTCATTCTGCGCTCGAGTTTCCATTTCTTCAACCTCGATCGAGCATAGGCGGCGAAAACCCCTGCACTCACCGTCGTCTTTCTCGGAGCAAAATGGCCTCAGGTCGCAATGGCACCAGGTTCTTCAGAGGTTGCAGAACCCTCTTTGATTCTCTCAAATCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTGCCAAGGGGAAGCTAAAAGCCTCAAATACCGCCGTTTCGGGCCAAAAATCGGTAGCCGGACCAAAGAAAGTGGTGAATCGTTCGACGGGAATTTTTAAGTCCTTCCCAGTTTCTCCGGCTCTCGCTGGCTTCCTTGGCATGTCCGAGACTTCGCGTTCCGAAGCCGTCAAACAAATATGGGCCTACATCAAGCTGAATAACCTCCAGAGCCCAGCTGACAAGAGGCAGATCAATTGTGATGAAAAGCTGAAGGCTATATTTGATGGAAGAGAGAAGGTGGGATTCTTAGAGATTGGAAAATTGCTAACCCCTCATTTTGTGAAATCTAGTTAACCTTAAACTTCCAGTGCATGCACTGGCTTAGTTGTTCTAACTGTTCTTTCTCAACCTGTCTTCCAAATCCTTGATGTTGTTTTCTTATGTTGTGTTTTTTTTGGTTAATCCTATGACTTCACCTTTACTCTTTTGTTTGTAAAGGGGGTATGCTATTCCAAACAAACTTTGGATAAGGAAATAGAAGTAGTGATGCTTGTGTGCTTAAAATTGCTATTCCTAGTCTCATTATTTCAAAGGTAAATGCATATTTATCAATAGGTTAAATGGTAAATGTAATTGCCAAATTGAGGCTGGAGGCTTGATTCACATTCCTGCAATTGTTTGTACCAAAC

Coding sequence (CDS)

ATGGCCTCAGGTCGCAATGGCACCAGGTTCTTCAGAGGTTGCAGAACCCTCTTTGATTCTCTCAAATCCACCACTCAAGCTTACTCTTCTACTCCTGCGGTCTCTGCCAAGGGGAAGCTAAAAGCCTCAAATACCGCCGTTTCGGGCCAAAAATCGGTAGCCGGACCAAAGAAAGTGGTGAATCGTTCGACGGGAATTTTTAAGTCCTTCCCAGTTTCTCCGGCTCTCGCTGGCTTCCTTGGCATGTCCGAGACTTCGCGTTCCGAAGCCGTCAAACAAATATGGGCCTACATCAAGCTGAATAACCTCCAGAGCCCAGCTGACAAGAGGCAGATCAATTGTGATGAAAAGCTGAAGGCTATATTTGATGGAAGAGAGAAGGTGGGATTCTTAGAGATTGGAAAATTGCTAACCCCTCATTTTGTGAAATCTAGTTAA

Protein sequence

MASGRNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKVVNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLKAIFDGREKVGFLEIGKLLTPHFVKSS

Homology

[Close]

BLAST of Bhi12G002266 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-30
Identity = 74/140 (52.86%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 11  FRGCRTLFDSLKSTTQAYSST-----PAVSAKGKLKASNTAVSGQKSVAGPKKVVNRSTG 70
           FRG R+L       T +  S      PA   K K K    A S       P K   RSTG
Sbjct: 9   FRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSD-----SPAKKTPRSTG 68

Query: 71  IFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLKAIFDGR 130
           IFK  PVSP LA FLG  ETSR++A+K IW YIK ++LQ+PADKR+I CDE LK IF+G+
Sbjct: 69  IFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGK 128

Query: 131 EKVGFLEIGKLLTPHFVKSS 146
           +KVGFLEI KLL+PHFVK++
Sbjct: 129 DKVGFLEISKLLSPHFVKTA 143

[Close]

BLAST of Bhi12G002266 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 8.5e-25
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 58  KVVNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEK 117
           K   + TGI K  PVS  LA F+G +E SR+ AVK+IW YIKLNNLQ+P +KR+I CDE+
Sbjct: 22  KTGRQGTGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQ 81

Query: 118 LKAIFDGREKVGFLEIGKLLTPHFVKSS 146
           LK IF G++ VGFLEI KLL+ HF KS+
Sbjct: 82  LKTIFSGKDTVGFLEISKLLSQHFPKSA 109

[Close]

BLAST of Bhi12G002266 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-24
Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 0


Query: 59  VVNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKL 118
           V     GIFK+ PVS  LA F G  E +R  A+K++W Y+KL+NLQ+PA+K++I+CD+KL
Sbjct: 26  VAGEGKGIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKL 85

Query: 119 KAIFDGREKVGFLEIGKLLTPHFVKS 145
           K IFDG++KVG  EI KLL+PHF KS
Sbjct: 86  KTIFDGKDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of Bhi12G002266 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-21
Identity = 58/135 (42.96%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 8   TRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKVVNRSTGIF 67
           T  FR   T   SL+     ++S PA   +  ++A  +A    +  A  K+V     GI 
Sbjct: 16  TTSFRNPSTPLSSLR-----FASHPAAKLR-LVRAVTSATESSEPTATNKRV---PRGIM 75

Query: 68  KSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLKAIFDGREK 127
           K  PVSP +   + + E +R++A+K+IWAYIK ++LQ P +KR+I CDEKLK IF+GR++
Sbjct: 76  KPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDR 135

Query: 128 VGFLEIGKLLTPHFV 143
           VGFLEI KL+ PHF+
Sbjct: 136 VGFLEIAKLIGPHFL 141

[Close]

BLAST of Bhi12G002266 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 97.4 bits (241), Expect = 9.8e-21
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 65  GIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLKAIFDG 124
           GI K  PVS A+   +G+ E  R++A+K+IWAYIK ++LQ P +KR I CDEKLK IF+G
Sbjct: 67  GIMKPRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEG 126

Query: 125 REKVGFLEIGKLLTPHFV 143
           +E+VGFLEI KL+ PHF+
Sbjct: 127 KERVGFLEIAKLIGPHFL 144

[Close]

BLAST of Bhi12G002266 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-10
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 25  TQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKVVNR---STGIFKSFPVSPALAGFLG 84
           T+   +T   + +GK  A  T    +    G K+  N+   +  + K   +SP LA FLG
Sbjct: 73  TKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDPANNPLNKPMKLSPKLAEFLG 132

Query: 85  MSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLKAIFD 124
           + + SR + VK++W YIK ++LQ P DKR I CD+KLK++F+
Sbjct: 133 LEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174

[Close]

BLAST of Bhi12G002266 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-10
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 72  VSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLKAIFDGREKVGFL 131
           +S  L  FLG  E  R++ VK IW YIK ++LQ+P D+R+I CDEK++ IF   +K+   
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFG--KKMTMF 185

Query: 132 EIGKLLTPH 141
            + KLLT H
Sbjct: 186 SMNKLLTKH 192

[Close]

BLAST of Bhi12G002266 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-09
Identity = 45/132 (34.09%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 15  RTLFDSLK-STTQAYSSTP--AVSAKGKLKASNTAVSGQKSVAGPKKVVNRSTGIFKSFP 74
           R+L D LK + T A   T    VS +   +  N + +    V   K  V++S    +   
Sbjct: 66  RSLEDLLKENATLAIELTKEITVSKRSSGEEKNDSETKGTHVEKKKGTVSKSPISTRKVT 125

Query: 75  VSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLKAIFDGREKVGFL 134
           +S +LA  LG  E +R+E V+++WAYIK +NLQ+P +K++I CDEKL+ I    +     
Sbjct: 126 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELILG--KSTNMF 185

Query: 135 EIGKLLTPHFVK 144
           E+ K+L  H  +
Sbjct: 186 EMHKILASHMTE 195

[Close]

BLAST of Bhi12G002266 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.1e-06
Identity = 25/68 (36.76%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 70  FPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLKAIFDGREKVG 129
           + +S A A  LG+ E +R + V  +W YIK + LQ   +KR INCD+ L+ +F+  +++ 
Sbjct: 206 YKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA-DRLY 265

Query: 130 FLEIGKLL 138
           F  I +L+
Sbjct: 266 FPRIPELM 272

[Close]

BLAST of Bhi12G002266 vs. NCBI nr
Match: XP_038906873.1 (upstream activation factor subunit spp27-like [Benincasa hispida])

HSP 1 Score: 282.7 bits (722), Expect = 1.8e-72
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MASGRNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKVV 60
           MASGRNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKVV
Sbjct: 1   MASGRNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKVV 60

Query: 61  NRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLKA 120
           NRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLKA
Sbjct: 61  NRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLKA 120

Query: 121 IFDGREKVGFLEIGKLLTPHFVKSS 146
           IFDGREKVGFLEIGKLLTPHFVKSS
Sbjct: 121 IFDGREKVGFLEIGKLLTPHFVKSS 145

[Close]

BLAST of Bhi12G002266 vs. NCBI nr
Match: XP_023000110.1 (upstream activation factor subunit spp27-like [Cucurbita maxima])

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 118/146 (80.82%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60
           MASG  NGTR FRGCRTL DSLKSTTQAYSS  AVS KG+LKAS  A S +KS AG KK 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120
            NRS GIFKS  VSPALAGFLGMSE+SRSEAVKQIW+YIKLN+LQ+PA+KRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFDGREKVGFLEIGKLLTPHFVKSS 146
           AIFDGRE VG LEIGKLL+PHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

[Close]

BLAST of Bhi12G002266 vs. NCBI nr
Match: KAG6593744.1 (hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 117/146 (80.14%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60
           MASG  NGTR FRGCRTL DSLKSTTQAYSS  AVS KG++KAS  A S +KS AG KK 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGEIKASGAAASRKKSEAGEKKE 60

Query: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120
            NRS GI KS  VSPALAGFLGMSE+SR+EAVKQIW+YIKLNNLQ+PA+KRQINCDEKLK
Sbjct: 61  GNRSGGILKSVQVSPALAGFLGMSESSRAEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 120

Query: 121 AIFDGREKVGFLEIGKLLTPHFVKSS 146
           AIFDGRE VGFLEIGKLL+PHFVKSS
Sbjct: 121 AIFDGRENVGFLEIGKLLSPHFVKSS 146

[Close]

BLAST of Bhi12G002266 vs. NCBI nr
Match: XP_023514456.1 (upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-53
Identity = 118/146 (80.82%), Postives = 124/146 (84.93%), Query Frame = 0


Query: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60
           MASG  NGTR FRGCRTL DSLKSTTQAYSS  AVS KGKLKAS  A S + S AG KK 
Sbjct: 56  MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGKLKASGAAASRKNSEAGEKKE 115

Query: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120
           VNRS GIFKS  VSPALAGFLGMSE+SR EAVKQIW+YIKLNNLQ+PA+KRQINCDEKLK
Sbjct: 116 VNRSGGIFKSVQVSPALAGFLGMSESSRPEAVKQIWSYIKLNNLQNPANKRQINCDEKLK 175

Query: 121 AIFDGREKVGFLEIGKLLTPHFVKSS 146
           AIFDGRE VG LEIGKLL+ HFVKSS
Sbjct: 176 AIFDGRENVGILEIGKLLSAHFVKSS 201

[Close]

BLAST of Bhi12G002266 vs. NCBI nr
Match: XP_023000111.1 (upstream activation factor subunit spp27-like [Cucurbita maxima])

HSP 1 Score: 219.2 bits (557), Expect = 2.4e-53
Identity = 117/146 (80.14%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60
           MASG  NGTR FRGCRTL DSLKSTTQAYSS  AVS KG+LKAS  A + +KS AG KK 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60

Query: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120
            NRS GIFKS  VSPALAGFLGMSE+SRSEAVKQIW+YIKLN+LQ+PA+KRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFDGREKVGFLEIGKLLTPHFVKSS 146
           AIFDGRE VG LEIGKLL+PHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

[Close]

BLAST of Bhi12G002266 vs. ExPASy TrEMBL
Match: A0A6J1KHF5 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494404 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.2e-54
Identity = 118/146 (80.82%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60
           MASG  NGTR FRGCRTL DSLKSTTQAYSS  AVS KG+LKAS  A S +KS AG KK 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAASRKKSEAGEKKE 60

Query: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120
            NRS GIFKS  VSPALAGFLGMSE+SRSEAVKQIW+YIKLN+LQ+PA+KRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFDGREKVGFLEIGKLLTPHFVKSS 146
           AIFDGRE VG LEIGKLL+PHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

[Close]

BLAST of Bhi12G002266 vs. ExPASy TrEMBL
Match: A0A6J1KEZ2 (upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC111494406 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53
Identity = 117/146 (80.14%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60
           MASG  NGTR FRGCRTL DSLKSTTQAYSS  AVS KG+LKAS  A + +KS AG KK 
Sbjct: 1   MASGLNNGTRLFRGCRTLLDSLKSTTQAYSSAAAVSPKGELKASGAAATRKKSEAGEKKE 60

Query: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120
            NRS GIFKS  VSPALAGFLGMSE+SRSEAVKQIW+YIKLN+LQ+PA+KRQINCDEKLK
Sbjct: 61  GNRSGGIFKSVQVSPALAGFLGMSESSRSEAVKQIWSYIKLNDLQNPANKRQINCDEKLK 120

Query: 121 AIFDGREKVGFLEIGKLLTPHFVKSS 146
           AIFDGRE VG LEIGKLL+PHFVKSS
Sbjct: 121 AIFDGRENVGILEIGKLLSPHFVKSS 146

[Close]

BLAST of Bhi12G002266 vs. ExPASy TrEMBL
Match: A0A5D3DMJ2 (Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00610 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.5e-50
Identity = 108/145 (74.48%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60
           MASG  NGTRFFRGC+TL DSLK TTQAYSSTPAVS+K KLK  + AVSGQKS A PK+ 
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120
            N S GI KS  VSP LAGFLG SE SR++A+KQIW+YIKLNNLQ+  DKRQINCD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFDGREKVGFLEIGKLLTPHFVKS 145
           AIF GREKVG LEI K L+PHFVKS
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKS 145

[Close]

BLAST of Bhi12G002266 vs. ExPASy TrEMBL
Match: A0A1S3CBA0 (protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.5e-50
Identity = 108/145 (74.48%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60
           MASG  NGTRFFRGC+TL DSLK TTQAYSSTPAVS+K KLK  + AVSGQKS A PK+ 
Sbjct: 1   MASGLSNGTRFFRGCKTLLDSLKPTTQAYSSTPAVSSKSKLKPPSAAVSGQKSKAAPKRQ 60

Query: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120
            N S GI KS  VSP LAGFLG SE SR++A+KQIW+YIKLNNLQ+  DKRQINCD KLK
Sbjct: 61  TNSSGGIMKSLKVSPTLAGFLGQSEISRADAIKQIWSYIKLNNLQNQTDKRQINCDAKLK 120

Query: 121 AIFDGREKVGFLEIGKLLTPHFVKS 145
           AIF GREKVG LEI K L+PHFVKS
Sbjct: 121 AIFGGREKVGMLEISKFLSPHFVKS 145

[Close]

BLAST of Bhi12G002266 vs. ExPASy TrEMBL
Match: A0A0A0KCY9 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.3e-48
Identity = 107/145 (73.79%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 1   MASG-RNGTRFFRGCRTLFDSLKSTTQAYSSTPAVSAKGKLKASNTAVSGQKSVAGPKKV 60
           MASG  NGTRFF+GCRTL DSLKSTTQAYSSTP VS+K  LK S  AVSGQKS   PKKV
Sbjct: 1   MASGLSNGTRFFKGCRTLLDSLKSTTQAYSSTPGVSSKSTLKPSTAAVSGQKSKPAPKKV 60

Query: 61  VNRSTGIFKSFPVSPALAGFLGMSETSRSEAVKQIWAYIKLNNLQSPADKRQINCDEKLK 120
            N S G+ K+  VSP LAGFLG SE +R+EAVKQIW YIKLNNLQ+P DKRQI CD KLK
Sbjct: 61  ANPSGGLLKTQKVSPTLAGFLGQSEIARTEAVKQIWVYIKLNNLQNPTDKRQIICDAKLK 120

Query: 121 AIFDGREKVGFLEIGKLLTPHFVKS 145
           AIF GREKVG LEI K L+ HFVKS
Sbjct: 121 AIFGGREKVGMLEIPKFLSIHFVKS 145

The following BLAST results are available for this feature:

BLAST of Bhi12G002266 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	1.0e-30	52.86	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	8.5e-25	60.23	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	4.2e-24	56.98	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	4.4e-21	42.96	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	9.8e-21	57.69	SWIB/MDM2 domain superfamily protein	[more]

BLAST of Bhi12G002266 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	3.4e-10	37.25	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q05024	7.6e-10	46.38	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q08747	1.7e-09	34.09	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q9P7S3	5.1e-06	36.76	SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]

BLAST of Bhi12G002266 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906873.1	1.8e-72	100.00	upstream activation factor subunit spp27-like [Benincasa hispida]	[more]
XP_023000110.1	1.1e-53	80.82	upstream activation factor subunit spp27-like [Cucurbita maxima]	[more]
KAG6593744.1	1.1e-53	80.14	hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023514456.1	1.8e-53	80.82	upstream activation factor subunit UAF30-like [Cucurbita pepo subsp. pepo]	[more]
XP_023000111.1	2.4e-53	80.14	upstream activation factor subunit spp27-like [Cucurbita maxima]	[more]

BLAST of Bhi12G002266 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KHF5	5.2e-54	80.82	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1KEZ2	1.2e-53	80.14	upstream activation factor subunit spp27-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5D3DMJ2	4.5e-50	74.48	Protein TRI1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00...	[more]
A0A1S3CBA0	4.5e-50	74.48	protein TRI1-like OS=Cucumis melo OX=3656 GN=LOC103499003 PE=4 SV=1	[more]
A0A0A0KCY9	7.3e-48	73.79	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G078570 PE=4 S...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 66..145 e-value: 1.1E-29 score: 114.6
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 69..141 e-value: 1.9E-30 score: 104.5
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 65..143 score: 21.937849
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 60..145 e-value: 3.0E-28 score: 99.6
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 63..143
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 2..144
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 2..144
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 70..141 e-value: 4.72134E-36 score: 116.874

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M002266	Bhi12M002266	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus