Bhi12G001332 (gene) Wax gourd (B227) v1

Overview
NameBhi12G001332
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297
Locationchr12: 49403510 .. 49403822 (-)
RNA-Seq ExpressionBhi12G001332
SyntenyBhi12G001332
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTGGGAGTACAATCGCTAATGACATTGGGACGAGTTGAATGTGATTGGAGTACATCGGAAATGAAGTTTCAAATTGGAGATTGGCGGGTGCACTTGAAGGGGGATCGCAGTCTGATGAAAGCCCAAATCTCTCTAAAATTGATGATGAAACTGGTCAGAGAAGAGGGCCAAGGTATATTGCTCGAATTGAATTCTCTTCTGACCACAATAAGGGAAGACATAGACCAAATAGAGGAAGAACACCAACCAAAAATCAGGAAAATTCTAAAGAGATATCAATCGGTCTTTCAAGAAGTAGAGGGGTTACCTCCA

mRNA sequence

TGTGGGAGTACAATCGCTAATGACATTGGGACGAGTTGAATGTGATTGGAGTACATCGGAAATGAAGTTTCAAATTGGAGATTGGCGGGTGCACTTGAAGGGGGATCGCAGTCTGATGAAAGCCCAAATCTCTCTAAAATTGATGATGAAACTGGTCAGAGAAGAGGGCCAAGGTATATTGCTCGAATTGAATTCTCTTCTGACCACAATAAGGGAAGACATAGACCAAATAGAGGAAGAACACCAACCAAAAATCAGGAAAATTCTAAAGAGATATCAATCGGTCTTTCAAGAAGTAGAGGGGTTACCTCCA

Coding sequence (CDS)

TGTGGGAGTACAATCGCTAATGACATTGGGACGAGTTGAATGTGATTGGAGTACATCGGAAATGAAGTTTCAAATTGGAGATTGGCGGGTGCACTTGAAGGGGGATCGCAGTCTGATGAAAGCCCAAATCTCTCTAAAATTGATGATGAAACTGGTCAGAGAAGAGGGCCAAGGTATATTGCTCGAATTGAATTCTCTTCTGACCACAATAAGGGAAGACATAGACCAAATAGAGGAAGAACACCAACCAAAAATCAGGAAAATTCTAAAGAGATATCAATCGGTCTTTCAAGAAGTAGAGGGGTTACCTCCA

Protein sequence

VGVQSLMTLGRVECDWSTSEMKFQIGDWRVHLKGDRSLMKAQISLKLMMKLVREEGQGILLELNSLLTTIREDIDQIEEEHQPKIRKILKRYQSVFQEVEGLPP
Homology
BLAST of Bhi12G001332 vs. NCBI nr
Match: XP_038904464.1 (uncharacterized protein LOC120090832 [Benincasa hispida])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 0

Query: 1   VGVQSLMTLGRVECDWSTSEMKFQIGDWRVHLKGDRSLMKAQISLKLMMKLVREEGQGIL 60
           +GVQ LMTLGRVECDW TSEM+FQIGDW+VHLKG+R+LMKAQISLK MMKLVREEGQGIL
Sbjct: 522 LGVQWLMTLGRVECDWGTSEMEFQIGDWQVHLKGNRNLMKAQISLKSMMKLVREEGQGIL 581

Query: 61  LELNSLLTTIREDIDQIEEEHQPKIRKILKRYQSVFQEVEGLPP 105
           LEL+SLLTT RED        +PKI++IL++Y SVFQ VE LPP
Sbjct: 582 LELSSLLTTERED------GGRPKIQEILRKYHSVFQAVERLPP 619

BLAST of Bhi12G001332 vs. NCBI nr
Match: XP_017239425.1 (PREDICTED: uncharacterized protein LOC108212210 [Daucus carota subsp. sativus])

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 1   VGVQSLMTLGRVECDWSTSEMKFQIGDWRVHLKGDRSLMKAQISLKLMMKLVREEGQGIL 60
           +GVQ L  LG V  +W T  +KF++GD  V LKGD +L ++ ISLK ++K ++ E QG L
Sbjct: 647 LGVQWLEKLGTVSTNWKTHTLKFRLGDQNVTLKGDPALGRSLISLKALLKTIKREDQGFL 706

Query: 61  LELNSLLTTIREDIDQIEEEHQPKIRKILKRYQSVFQEVEGLPP 105
           +E NSL  +     DQ E    P +++ L++Y++VF    GLPP
Sbjct: 707 VEFNSLARSASPPPDQCEPVVPPFLQQTLQQYKAVFDMPAGLPP 750

BLAST of Bhi12G001332 vs. NCBI nr
Match: XP_031737572.1 (uncharacterized protein LOC116402461 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-12
Identity = 48/108 (44.44%), Postives = 71/108 (65.74%), Query Frame = 0

Query: 1   VGVQSLMTLGRVECDWSTSEMKFQIGDWRVHLKGDRSLMKAQISLKLMMKLVREEGQGIL 60
           +GV  L TLG+V  D+  SEM+F  G+W V L+GDRSL+++Q+SLK MMK   +E QG+L
Sbjct: 189 LGVTWLETLGKVIFDYKLSEMEFSSGEWVVILQGDRSLVRSQVSLKSMMKTFEKEDQGVL 248

Query: 61  LELNSL----LTTIREDIDQIEEEHQPKIRKILKRYQSVFQEVEGLPP 105
           +EL+++        RE I     + QP+I+K+L+ + SVF+    LPP
Sbjct: 249 IELSTVEQWGAGEAREHIANYLSKLQPEIQKVLQSF-SVFEPSNQLPP 295

BLAST of Bhi12G001332 vs. NCBI nr
Match: XP_021867096.1 (uncharacterized protein LOC110805782 [Spinacia oleracea])

HSP 1 Score: 82.0 bits (201), Expect = 3.3e-12
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 0

Query: 1   VGVQSLMTLGRVECDWSTSEMKFQIGDWRVHLKGDRSLMKAQISLKLMMKLVREEGQGIL 60
           +G+Q L  LG V  +W T  M +QIG+  V LKGD SL +++ISLK MMK++R+EG GIL
Sbjct: 548 LGIQWLEKLGPVVTNWKTQVMTYQIGEVPVTLKGDPSLSRSRISLKAMMKVIRKEGGGIL 607

Query: 61  LELNSLLTTIREDIDQIEEEHQPKIRKILKRYQSVFQEVEGLPP 105
           LELN +     E     E      +R++L  +Q +F E +GLPP
Sbjct: 608 LELNQM-----EHRKDGEPTVPDFLREVLDEFQGIFAEPKGLPP 646

BLAST of Bhi12G001332 vs. NCBI nr
Match: XP_038907170.1 (uncharacterized protein LOC120092972 [Benincasa hispida])

HSP 1 Score: 81.6 bits (200), Expect = 4.3e-12
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 0

Query: 1   VGVQSLMTLGRVECDWSTSEMKFQIGDWRVHLKGDRSLMKAQISLKLMMKLVREEG 57
           +GVQ LMTLG+VECDWSTS+M FQ+G+ RVHLK DRSL+K+QISLK MMK + + G
Sbjct: 304 MGVQWLMTLGQVECDWSTSKMDFQVGERRVHLKADRSLVKSQISLKSMMKHMMKAG 359

BLAST of Bhi12G001332 vs. ExPASy TrEMBL
Match: J3SDF5 (Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.6e-11
Identity = 41/108 (37.96%), Postives = 70/108 (64.81%), Query Frame = 0

Query: 1   VGVQSLMTLGRVECDWSTSEMKFQIGDWRVHLKGDRSLMKAQISLKLMMKLVREEGQGIL 60
           +GVQ L TLG V  +W T +M FQ+G     L GD +L ++++SLK M++ +R+EG G+ 
Sbjct: 570 LGVQWLETLGTVVSNWKTQKMSFQLGGVPYTLTGDPTLARSKVSLKAMLRTLRKEGGGLW 629

Query: 61  LELNSL----LTTIREDIDQIEEEHQPKIRKILKRYQSVFQEVEGLPP 105
           LE N +      +IR+   ++E+E  P ++++++R++ VF+   GLPP
Sbjct: 630 LECNQVEAGGAGSIRD--SKVEQEIPPFLQELMRRFEGVFETPVGLPP 675

BLAST of Bhi12G001332 vs. ExPASy TrEMBL
Match: A0A2I0WN12 (Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca001655 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.3e-10
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 0

Query: 1   VGVQSLMTLGRVECDWSTSEMKFQIGDWRVHLKGDRSLMKAQISLKLMMKLVREEGQGIL 60
           +G++ L TLG  + +W T  M+  +   RV L+G+  L +A +SL+ M+K++ EEG G L
Sbjct: 538 LGMKWLQTLGETKVNWGTMVMELMVEGKRVKLRGEPGLSRAGVSLRSMVKIIHEEGGGFL 597

Query: 61  LELNSLLTTIREDIDQIEEEHQPK-IRKILKRYQSVFQEVEGLPP 105
           +EL SL     ED  + EE+H P  ++  L+ ++ VFQ   GLPP
Sbjct: 598 VELQSL-----EDQQEGEEKHIPALVQPFLQEFEDVFQPPVGLPP 637

BLAST of Bhi12G001332 vs. ExPASy TrEMBL
Match: A0A087HF90 (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA2G041600 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.8e-09
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 0

Query: 1   VGVQSLMTLGRVECDWSTSEMKFQIGDWRVHLKGDRSLMKAQISLKLMMKLVREEGQGIL 60
           +G+Q L +LG ++C+W   ++ F +G+  V L+GD SL  + IS+K + K +  EGQG++
Sbjct: 252 LGIQWLASLGDMKCNWKLQKLSFMVGEKEVELRGDPSLCCSPISMKGLWKALDREGQGVI 311

Query: 61  LELNSLLTTIREDIDQIEEEHQPKI-RKILKRYQSVFQEVEGLPP 105
           +E   L T       Q  E   P + + ++  + SVF+E +GLPP
Sbjct: 312 IEFGGLQTE-----GQRRERAVPGVLQGVISEFASVFEEPQGLPP 351

BLAST of Bhi12G001332 vs. ExPASy TrEMBL
Match: A0A087FY99 (Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AAs54367U000800 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.8e-09
Identity = 37/105 (35.24%), Postives = 62/105 (59.05%), Query Frame = 0

Query: 1   VGVQSLMTLGRVECDWSTSEMKFQIGDWRVHLKGDRSLMKAQISLKLMMKLVREEGQGIL 60
           +G+Q L +LG ++C+W   ++ F +G+  V L+GD SL  + IS+K + K +  EGQG++
Sbjct: 315 LGIQWLASLGDMKCNWKLQKLSFMVGEEEVELRGDPSLCCSPISMKGLWKALDREGQGVI 374

Query: 61  LELNSLLTTIREDIDQIEEEHQPKI-RKILKRYQSVFQEVEGLPP 105
           +E   L T       Q  E   P + + ++  + SVF+E +GLPP
Sbjct: 375 IEFGGLQTE-----GQRRERAVPGVLQGVISEFASVFEEPQGLPP 414

BLAST of Bhi12G001332 vs. ExPASy TrEMBL
Match: A0A5A7TH70 (DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001860 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.1e-09
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 0

Query: 1   VGVQSLMTLGRVECDWSTSEMKFQIGDWRVHLKGDRSLMKAQISLKLMMKLVREEGQGIL 60
           +G+Q L T G +E  W +  M F +G  +V LKGD SL KA+ SLK + K   EE +G L
Sbjct: 428 LGMQWLSTTGFMEIHWPSMTMVFMVGSSQVILKGDPSLTKAECSLKTISKTWEEEDRGFL 487

Query: 61  LELNSLLTTIREDI-----DQIEEEHQPKIRKILKRYQSVFQEVEGLPP 105
           +E   +      ++     ++ EE + PKIR +L + + +F+  +GLPP
Sbjct: 488 IEFQKIEIEAGSEVESEKEEEGEESNLPKIRNLLAKNRIIFELPKGLPP 536

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038904464.11.3e-3275.00uncharacterized protein LOC120090832 [Benincasa hispida][more]
XP_017239425.11.1e-1242.31PREDICTED: uncharacterized protein LOC108212210 [Daucus carota subsp. sativus][more]
XP_031737572.12.5e-1244.44uncharacterized protein LOC116402461 [Cucumis sativus][more]
XP_021867096.13.3e-1245.19uncharacterized protein LOC110805782 [Spinacia oleracea][more]
XP_038907170.14.3e-1269.64uncharacterized protein LOC120092972 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
J3SDF56.6e-1137.96Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 ... [more]
A0A2I0WN124.3e-1039.05Putative mitochondrial protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca0016... [more]
A0A087HF904.8e-0935.24Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AA2G041600 PE=4 SV=1[more]
A0A087FY994.8e-0935.24Uncharacterized protein OS=Arabis alpina OX=50452 GN=AALP_AAs54367U000800 PE=4 S... [more]
A0A5A7TH708.1e-0936.70DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 ... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 60..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M001332Bhi12M001332mRNA