Bhi12G000936 (gene) Wax gourd (B227) v1

Overview


Name	Bhi12G000936
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	ethylene-responsive transcription factor LEP
Location	chr12: 32324395 .. 32324595 (-)
RNA-Seq Expression	Bhi12G000936
Synteny	Bhi12G000936

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCACAGGCTAACGTTGGATTTGAATGCTTTGATCAGTCGTCGACTGGAATCGGGTCGTGTTTGGGATTGGATTCGAGCGGTGAATACATGCATAACCGGATGTTCGGTTCAATGTCGGCTGTTCCCGACGCCGGCGCCGATGATTTTGAGTCTCCGGCGGCTAATTTCTATTTCCCTCCGTCTTCAGATTATTAA

mRNA sequence

ATGGAATCACAGGCTAACGTTGGATTTGAATGCTTTGATCAGTCGTCGACTGGAATCGGGTCGTGTTTGGGATTGGATTCGAGCGGTGAATACATGCATAACCGGATGTTCGGTTCAATGTCGGCTGTTCCCGACGCCGGCGCCGATGATTTTGAGTCTCCGGCGGCTAATTTCTATTTCCCTCCGTCTTCAGATTATTAA

Coding sequence (CDS)

ATGGAATCACAGGCTAACGTTGGATTTGAATGCTTTGATCAGTCGTCGACTGGAATCGGGTCGTGTTTGGGATTGGATTCGAGCGGTGAATACATGCATAACCGGATGTTCGGTTCAATGTCGGCTGTTCCCGACGCCGGCGCCGATGATTTTGAGTCTCCGGCGGCTAATTTCTATTTCCCTCCGTCTTCAGATTATTAA

Protein sequence

MESQANVGFECFDQSSTGIGSCLGLDSSGEYMHNRMFGSMSAVPDAGADDFESPAANFYFPPSSDY

Homology

[Close]

BLAST of Bhi12G000936 vs. NCBI nr
Match: KAA0066104.1 (ethylene-responsive transcription factor LEP [Cucumis melo var. makuwa] >TYK15143.1 ethylene-responsive transcription factor LEP [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-17
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1   MESQANVGFECFDQSSTGIGSCLGLDSSGEYMHNRMFGSMSAVPDAGADDFESPAANFYF 60
           MESQ NVGFECFDQSS G+GSCLG DSSG+YM+N M GSM+ V DAG  D +SPAANFY 
Sbjct: 164 MESQ-NVGFECFDQSSIGMGSCLGFDSSGDYMYNPMLGSMATVSDAGTGDLQSPAANFYL 223

Query: 61  PPSSDY 67
           P SS+Y
Sbjct: 224 PQSSEY 228

[Close]

BLAST of Bhi12G000936 vs. NCBI nr
Match: XP_004151396.2 (ethylene-responsive transcription factor LEP-like [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-17
Identity = 49/66 (74.24%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1   MESQANVGFECFDQSSTGIGSCLGLDSSGEYMHNRMFGSMSAVPDAGADDFESPAANFYF 60
           MESQ NVGFECFDQSS GIGSCLG DSS +Y++N M GSM  V D GA DFESPA NFY 
Sbjct: 184 MESQ-NVGFECFDQSSIGIGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYL 243

Query: 61  PPSSDY 67
           P SSDY
Sbjct: 244 PQSSDY 248

[Close]

BLAST of Bhi12G000936 vs. NCBI nr
Match: KAE8648382.1 (hypothetical protein Csa_023201, partial [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-17
Identity = 49/66 (74.24%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 1   MESQANVGFECFDQSSTGIGSCLGLDSSGEYMHNRMFGSMSAVPDAGADDFESPAANFYF 60
           MESQ NVGFECFDQSS GIGSCLG DSS +Y++N M GSM  V D GA DFESPA NFY 
Sbjct: 177 MESQ-NVGFECFDQSSIGIGSCLGFDSSSDYIYNPMLGSMPTVSDVGAGDFESPAGNFYL 236

Query: 61  PPSSDY 67
           P SSDY
Sbjct: 237 PQSSDY 241

[Close]

BLAST of Bhi12G000936 vs. NCBI nr
Match: XP_008437672.1 (PREDICTED: ethylene-responsive transcription factor LEP [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-17
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1   MESQANVGFECFDQSSTGIGSCLGLDSSGEYMHNRMFGSMSAVPDAGADDFESPAANFYF 60
           MESQ NVGFECFDQSS G+GSCLG DSSG+YM+N M GSM+ V DAG  D +SPAANFY 
Sbjct: 163 MESQ-NVGFECFDQSSIGMGSCLGFDSSGDYMYNPMLGSMATVSDAGTGDLQSPAANFYL 222

Query: 61  PPSSDY 67
           P SS+Y
Sbjct: 223 PQSSEY 227

[Close]

BLAST of Bhi12G000936 vs. NCBI nr
Match: XP_022990620.1 (ethylene-responsive transcription factor LEP-like [Cucurbita maxima])

HSP 1 Score: 85.9 bits (211), Expect = 1.4e-13
Identity = 45/63 (71.43%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 1   MESQANVGFECFDQSSTGIGSCLGLDSSGEYMHNRMFGSMSAVPDAGADDFESPAANFYF 60
           ME Q N GFE FDQSST IGSC G DSS EY+H  +F SM AV DAGA DF SPAANFYF
Sbjct: 161 MELQ-NSGFEYFDQSSTEIGSCFGFDSSSEYVHGPIFSSMPAVSDAGAGDFPSPAANFYF 220

Query: 61  PPS 64
           P S
Sbjct: 221 PQS 222

[Close]

BLAST of Bhi12G000936 vs. ExPASy TrEMBL
Match: A0A5A7VFL7 (Ethylene-responsive transcription factor LEP OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00060 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.9e-18
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1   MESQANVGFECFDQSSTGIGSCLGLDSSGEYMHNRMFGSMSAVPDAGADDFESPAANFYF 60
           MESQ NVGFECFDQSS G+GSCLG DSSG+YM+N M GSM+ V DAG  D +SPAANFY 
Sbjct: 164 MESQ-NVGFECFDQSSIGMGSCLGFDSSGDYMYNPMLGSMATVSDAGTGDLQSPAANFYL 223

Query: 61  PPSSDY 67
           P SS+Y
Sbjct: 224 PQSSEY 228

[Close]

BLAST of Bhi12G000936 vs. ExPASy TrEMBL
Match: A0A1S3AU89 (ethylene-responsive transcription factor LEP OS=Cucumis melo OX=3656 GN=LOC103483013 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.9e-18
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1   MESQANVGFECFDQSSTGIGSCLGLDSSGEYMHNRMFGSMSAVPDAGADDFESPAANFYF 60
           MESQ NVGFECFDQSS G+GSCLG DSSG+YM+N M GSM+ V DAG  D +SPAANFY 
Sbjct: 163 MESQ-NVGFECFDQSSIGMGSCLGFDSSGDYMYNPMLGSMATVSDAGTGDLQSPAANFYL 222

Query: 61  PPSSDY 67
           P SS+Y
Sbjct: 223 PQSSEY 227

[Close]

BLAST of Bhi12G000936 vs. ExPASy TrEMBL
Match: A0A6J1JQK9 (ethylene-responsive transcription factor LEP-like OS=Cucurbita maxima OX=3661 GN=LOC111487448 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.0e-14
Identity = 45/63 (71.43%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 1   MESQANVGFECFDQSSTGIGSCLGLDSSGEYMHNRMFGSMSAVPDAGADDFESPAANFYF 60
           ME Q N GFE FDQSST IGSC G DSS EY+H  +F SM AV DAGA DF SPAANFYF
Sbjct: 161 MELQ-NSGFEYFDQSSTEIGSCFGFDSSSEYVHGPIFSSMPAVSDAGAGDFPSPAANFYF 220

Query: 61  PPS 64
           P S
Sbjct: 221 PQS 222

[Close]

BLAST of Bhi12G000936 vs. ExPASy TrEMBL
Match: A0A6J1HKV8 (ethylene-responsive transcription factor LEP-like OS=Cucurbita moschata OX=3662 GN=LOC111463929 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.9e-12
Identity = 42/63 (66.67%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 1   MESQANVGFECFDQSSTGIGSCLGLDSSGEYMHNRMFGSMSAVPDAGADDFESPAANFYF 60
           ME Q N GFE F+QS T IGSC G DSS EY+H  +F SM AV DAGA +F SPAANFYF
Sbjct: 165 MELQ-NSGFEYFNQSPTEIGSCFGFDSSSEYVHGPIFSSMPAVSDAGAGEFPSPAANFYF 224

Query: 61  PPS 64
           P S
Sbjct: 225 PQS 226

[Close]

BLAST of Bhi12G000936 vs. ExPASy TrEMBL
Match: A0A6J1CKI8 (ethylene-responsive transcription factor LEP OS=Momordica charantia OX=3673 GN=LOC111011985 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.9e-09
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 1   MESQANVGFECFDQSSTGIGSCLGLDSSGEYMHNRMFGSMSAVPDAGADDFESPAANFYF 60
           ME+Q N+G E  DQSS GIGS  G DS GEY+ + +FG+M AV DA A DFESP ANFYF
Sbjct: 166 METQ-NIGLESLDQSSMGIGSYFGFDSGGEYVQSPIFGTMPAVSDALASDFESP-ANFYF 223

The following BLAST results are available for this feature:

BLAST of Bhi12G000936 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12G000936 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12G000936 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066104.1	1.6e-17	72.73	ethylene-responsive transcription factor LEP [Cucumis melo var. makuwa] >TYK1514...	[more]
XP_004151396.2	1.6e-17	74.24	ethylene-responsive transcription factor LEP-like [Cucumis sativus]	[more]
KAE8648382.1	1.6e-17	74.24	hypothetical protein Csa_023201, partial [Cucumis sativus]	[more]
XP_008437672.1	1.6e-17	72.73	PREDICTED: ethylene-responsive transcription factor LEP [Cucumis melo]	[more]
XP_022990620.1	1.4e-13	71.43	ethylene-responsive transcription factor LEP-like [Cucurbita maxima]	[more]

BLAST of Bhi12G000936 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VFL7	7.9e-18	72.73	Ethylene-responsive transcription factor LEP OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3AU89	7.9e-18	72.73	ethylene-responsive transcription factor LEP OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A6J1JQK9	7.0e-14	71.43	ethylene-responsive transcription factor LEP-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1HKV8	2.9e-12	66.67	ethylene-responsive transcription factor LEP-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1CKI8	3.9e-09	63.33	ethylene-responsive transcription factor LEP OS=Momordica charantia OX=3673 GN=L...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M000936	Bhi12M000936	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity