Bhi12G000935 (gene) Wax gourd (B227) v1

Overview


Name	Bhi12G000935
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	NAC domain-containing protein
Location	chr12: 32199038 .. 32199241 (+)
RNA-Seq Expression	Bhi12G000935
Synteny	Bhi12G000935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAGATTCATTGCAACAGGCTTTGAAGTTGTTGGTCGACTTTAGGTTTAACCCTACAGACCAAATACTCATGGAGCATTATCTTTACAATAAGATTCATACCCTTCCCTATTCTACACTCGTTGTTTTTTACTGTGATCTCTACGAAGATTTGGAGCCTTGGGAAATTTGGAATTCCTATGGTGGTGTTGATGGCTAA

mRNA sequence

ATGGATTCAGATTCATTGCAACAGGCTTTGAAGTTGTTGGTCGACTTTAGGTTTAACCCTACAGACCAAATACTCATGGAGCATTATCTTTACAATAAGATTCATACCCTTCCCTATTCTACACTCGTTGTTTTTTACTGTGATCTCTACGAAGATTTGGAGCCTTGGGAAATTTGGAATTCCTATGGTGGTGTTGATGGCTAA

Coding sequence (CDS)

ATGGATTCAGATTCATTGCAACAGGCTTTGAAGTTGTTGGTCGACTTTAGGTTTAACCCTACAGACCAAATACTCATGGAGCATTATCTTTACAATAAGATTCATACCCTTCCCTATTCTACACTCGTTGTTTTTTACTGTGATCTCTACGAAGATTTGGAGCCTTGGGAAATTTGGAATTCCTATGGTGGTGTTGATGGCTAA

Protein sequence

MDSDSLQQALKLLVDFRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEIWNSYGGVDG

Homology

[Close]

BLAST of Bhi12G000935 vs. TAIR 10
Match: AT1G61110.1 (NAC domain containing protein 25 )

HSP 1 Score: 41.2 bits (95), Expect = 3.8e-04
Identity = 18/43 (41.86%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 16 FRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEI 59
          FRF+PTD+ L+ HYL  K  ++P    ++   DLY+  +PWE+
Sbjct: 20 FRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYK-FDPWEL 61

[Close]

BLAST of Bhi12G000935 vs. TAIR 10
Match: AT1G52880.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 5.0e-04
Identity = 18/43 (41.86%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 16 FRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEI 59
          FRF+PTD+ L+ HYL  K  ++P    ++   DLY+  +PWE+
Sbjct: 21 FRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYK-FDPWEL 62

[Close]

BLAST of Bhi12G000935 vs. TAIR 10
Match: AT3G15510.1 (NAC domain containing protein 2 )

HSP 1 Score: 40.4 bits (93), Expect = 6.5e-04
Identity = 18/43 (41.86%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 16 FRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEI 59
          FRF+PTD+ L+ HYL  K  + P    ++   DLY+  +PWE+
Sbjct: 21 FRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYK-FDPWEL 62

[Close]

BLAST of Bhi12G000935 vs. TAIR 10
Match: AT5G07680.1 (NAC domain containing protein 80 )

HSP 1 Score: 40.4 bits (93), Expect = 6.5e-04
Identity = 19/43 (44.19%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 16 FRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEI 59
          FRF+PTD+ L+ HYL+ K+  L +S   +   DL    EPWE+
Sbjct: 21 FRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDL-NKAEPWEL 62

[Close]

BLAST of Bhi12G000935 vs. TAIR 10
Match: AT5G07680.2 (NAC domain containing protein 80 )

HSP 1 Score: 40.4 bits (93), Expect = 6.5e-04
Identity = 19/43 (44.19%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 16 FRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEI 59
          FRF+PTD+ L+ HYL+ K+  L +S   +   DL    EPWE+
Sbjct: 7  FRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDL-NKAEPWEL 48

[Close]

BLAST of Bhi12G000935 vs. NCBI nr
Match: XP_038877574.1 (NAC domain-containing protein 96-like [Benincasa hispida])

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MDSDSLQQALKLLVDFRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEIWN 60
          MDS+SLQQALKLLV FRFNPTDQILMEHYLYNKIH+L YSTLVVFYCDLY DLEPW+IWN
Sbjct: 1  MDSNSLQQALKLLVGFRFNPTDQILMEHYLYNKIHSLLYSTLVVFYCDLYGDLEPWKIWN 60

Query: 61 SYGGVDG 68
          SYGGVDG
Sbjct: 61 SYGGVDG 67

[Close]

BLAST of Bhi12G000935 vs. NCBI nr
Match: KAG6571608.1 (NAC domain-containing protein 30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-08
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 4  DSLQQALKLLVDFRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEIWNSYG 63
          DS  ++L L V  +F PTDQ L++ YL  KIH LPY    V YCDLY ++EPWEIW  +G
Sbjct: 2  DSRNRSL-LSVGVKFKPTDQQLLQ-YLNFKIHGLPYFKGAVLYCDLYGEMEPWEIWLRFG 61

Query: 64 GVDG 68
          G++G
Sbjct: 62 GING 63

[Close]

BLAST of Bhi12G000935 vs. NCBI nr
Match: KAE8651260.1 (hypothetical protein Csa_001645, partial [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-07
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 3  SDSLQQALKLLVDFRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEIWNSY 62
          S SL   L   V  +F PTDQ L+ HYL+ KI+  PY    VF  DLY  +EPWEIW S+
Sbjct: 5  SGSLPLPLNHYVGVKFRPTDQQLL-HYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWESF 64

Query: 63 GGVDG 68
          GG+DG
Sbjct: 65 GGIDG 68

[Close]

BLAST of Bhi12G000935 vs. NCBI nr
Match: XP_011652873.2 (NAC transcription factor 56 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.0e-07
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 3  SDSLQQALKLLVDFRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEIWNSY 62
          S SL   L   V  +F PTDQ L+ HYL+ KI+  PY    VF  DLY  +EPWEIW S+
Sbjct: 5  SGSLPLPLNHYVGVKFRPTDQQLL-HYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWESF 64

Query: 63 GGVDG 68
          GG+DG
Sbjct: 65 GGIDG 68

[Close]

BLAST of Bhi12G000935 vs. NCBI nr
Match: XP_022963780.1 (NAC transcription factor 25-like [Cucurbita moschata])

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 12 LLVDFRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEIWNSYGGVDG 68
          L V  RF PTDQ L+++ L+ KIH  PY    V  CDLY D+EPWEIW  +GG DG
Sbjct: 9  LPVGVRFRPTDQQLLQYLLW-KIHDQPYFKRAVLDCDLYGDMEPWEIWLRFGGTDG 63

[Close]

BLAST of Bhi12G000935 vs. ExPASy TrEMBL
Match: A0A0A0LFJ5 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G838730 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-08
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 0


Query: 3  SDSLQQALKLLVDFRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEIWNSY 62
          S SL   L   V  +F PTDQ L+ HYL+ KI+  PY    VF  DLY  +EPWEIW S+
Sbjct: 5  SGSLPLPLNHYVGVKFRPTDQQLL-HYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSF 64

Query: 63 GGVDG 68
          GG+DG
Sbjct: 65 GGIDG 68

[Close]

BLAST of Bhi12G000935 vs. ExPASy TrEMBL
Match: A0A6J1HIZ2 (NAC transcription factor 25-like OS=Cucurbita moschata OX=3662 GN=LOC111463972 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 12 LLVDFRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEIWNSYGGVDG 68
          L V  RF PTDQ L+++ L+ KIH  PY    V  CDLY D+EPWEIW  +GG DG
Sbjct: 9  LPVGVRFRPTDQQLLQYLLW-KIHDQPYFKRAVLDCDLYGDMEPWEIWLRFGGTDG 63

[Close]

BLAST of Bhi12G000935 vs. ExPASy TrEMBL
Match: A0A0A0KXM1 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G296900 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-07
Identity = 36/69 (52.17%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 1  MDSDS--LQQALKLLVDFRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEI 60
          MDS S  L   L   V  +F PTDQ L+ HYL+ KI+  PY    VF  DLY  +EPWEI
Sbjct: 1  MDSSSGYLPLPLNHYVGVKFRPTDQQLL-HYLHCKIYGQPYFQGAVFDFDLYGGVEPWEI 60

Query: 61 WNSYGGVDG 68
          W S+GG+DG
Sbjct: 61 WQSFGGIDG 68

[Close]

BLAST of Bhi12G000935 vs. ExPASy TrEMBL
Match: A0A0A0M0I5 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G652300 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.8e-07
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 14 VDFRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEIWNSYGGVDG 68
          V  +F PTDQ L+ HYL+ KI+  PY    VF  DLY  +EPWEIW S+GG+DG
Sbjct: 46 VGLKFRPTDQQLL-HYLHCKIYGQPYFQGAVFDFDLYGGVEPWEIWQSFGGIDG 98

[Close]

BLAST of Bhi12G000935 vs. ExPASy TrEMBL
Match: A0A6J1HSR6 (NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC111467095 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.9e-07
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 12 LLVDFRFNPTDQILMEHYLYNKIHTLPYSTLVVFYCDLYEDLEPWEIWNSYGGVDG 68
          L V  RF PTD  L++ YL+ KIH  PY    V  CDLY ++EPWEIW  +GG+DG
Sbjct: 9  LPVGVRFKPTDPQLLQ-YLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGIDG 63

The following BLAST results are available for this feature:

BLAST of Bhi12G000935 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G61110.1	3.8e-04	41.86	NAC domain containing protein 25	[more]
AT1G52880.1	5.0e-04	41.86	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein	[more]
AT3G15510.1	6.5e-04	41.86	NAC domain containing protein 2	[more]
AT5G07680.1	6.5e-04	44.19	NAC domain containing protein 80	[more]
AT5G07680.2	6.5e-04	44.19	NAC domain containing protein 80	[more]

BLAST of Bhi12G000935 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi12G000935 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877574.1	2.3e-27	91.04	NAC domain-containing protein 96-like [Benincasa hispida]	[more]
KAG6571608.1	5.4e-08	53.13	NAC domain-containing protein 30, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAE8651260.1	2.0e-07	52.31	hypothetical protein Csa_001645, partial [Cucumis sativus]	[more]
XP_011652873.2	2.0e-07	52.31	NAC transcription factor 56 [Cucumis sativus]	[more]
XP_022963780.1	2.7e-07	55.36	NAC transcription factor 25-like [Cucurbita moschata]	[more]

BLAST of Bhi12G000935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFJ5	9.9e-08	52.31	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G838730 PE=4 SV...	[more]
A0A6J1HIZ2	1.3e-07	55.36	NAC transcription factor 25-like OS=Cucurbita moschata OX=3662 GN=LOC111463972 P...	[more]
A0A0A0KXM1	1.7e-07	52.17	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G296900 PE=4 SV...	[more]
A0A0A0M0I5	3.8e-07	55.56	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G652300 PE=4 SV...	[more]
A0A6J1HSR6	4.9e-07	53.57	NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC11146709...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 15..58 e-value: 6.6E-7 score: 30.3
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 12..67 score: 10.432116
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 7..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M000935	Bhi12M000935	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding