Bhi12G000458 (gene) Wax gourd (B227) v1

Overview


Name	Bhi12G000458
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr12: 16220865 .. 16221068 (+)
RNA-Seq Expression	Bhi12G000458
Synteny	Bhi12G000458

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTCGGAGAATATTTCAATTCCACTTACTTCTTCTCAAGACTCAACTTTGGCACCTTCAGCGGCTACAATTTTTGTTCCTAATCCACTATTTGAAGAATGGATTGCAAAAGGCCAAGTATTGATGACCTTGATTAATGGTACTCTTTCCACTGAAGCGTTGGCTTATATTGTTGGTTGTACCTCAGCAAGTCAAACTTGA

mRNA sequence

ATGCCCTCGGAGAATATTTCAATTCCACTTACTTCTTCTCAAGACTCAACTTTGGCACCTTCAGCGGCTACAATTTTTGTTCCTAATCCACTATTTGAAGAATGGATTGCAAAAGGCCAAGTATTGATGACCTTGATTAATGGTACTCTTTCCACTGAAGCGTTGGCTTATATTGTTGGTTGTACCTCAGCAAGTCAAACTTGA

Coding sequence (CDS)

ATGCCCTCGGAGAATATTTCAATTCCACTTACTTCTTCTCAAGACTCAACTTTGGCACCTTCAGCGGCTACAATTTTTGTTCCTAATCCACTATTTGAAGAATGGATTGCAAAAGGCCAAGTATTGATGACCTTGATTAATGGTACTCTTTCCACTGAAGCGTTGGCTTATATTGTTGGTTGTACCTCAGCAAGTCAAACTTGA

Protein sequence

MPSENISIPLTSSQDSTLAPSAATIFVPNPLFEEWIAKGQVLMTLINGTLSTEALAYIVGCTSASQT

Homology

[Close]

BLAST of Bhi12G000458 vs. NCBI nr
Match: TYK17989.1 (uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 5.0e-06
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 2   PSENISIPLT-SSQDSTLAPSAATIFVPNPLFEEWIAKGQVLMTLINGTLSTEALAYIVG 61
           P + IS P T SS  +T   S++T  + NP +E+W AK Q  M LIN TLS EAL Y+VG
Sbjct: 65  PPKTISNPTTASSSATTQTTSSSTTEISNPPYEDWQAKDQAFMFLINATLSVEALTYVVG 124

Query: 62  CTSASQ 67
           C S+SQ
Sbjct: 125 CKSSSQ 130

[Close]

BLAST of Bhi12G000458 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 19  APSAATIFVP--NPLFEEWIAKGQVLMTLINGTLSTEALAYIVGCTSASQ 67
           +PS  +   P  NPL+E+WIAK Q LMT+IN TLS EALAY+VG TS+ Q
Sbjct: 69  SPSTTSTVPPQTNPLYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 118

[Close]

BLAST of Bhi12G000458 vs. NCBI nr
Match: XP_011658579.1 (uncharacterized protein LOC105436058 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 0


Query: 19  APSAATIFVP--NPLFEEWIAKGQVLMTLINGTLSTEALAYIVGCTSASQ 67
           +PS  +   P  NPL+E+WIAK Q LMT+IN TLS EALAY+VG TS+ Q
Sbjct: 69  SPSTTSTVPPQTNPLYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 118

[Close]

BLAST of Bhi12G000458 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-05
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 12  SSQDSTLAPSAATIFVPNPLFEEWIAKGQVLMTLINGTLSTEALAYIVGCTSASQ 67
           SS  ST+ P +      NP +E+WIAK Q LMT+IN TLS EALAY+VG TS+ Q
Sbjct: 72  SSSTSTVPPQS------NPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

[Close]

BLAST of Bhi12G000458 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 2.5e-05
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 12  SSQDSTLAPSAATIFVPNPLFEEWIAKGQVLMTLINGTLSTEALAYIVGCTSASQ 67
           SS  ST+ P +      NP +E+WIAK Q LMT+IN TLS EALAY+VG TS+ Q
Sbjct: 72  SSSTSTVPPQS------NPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

[Close]

BLAST of Bhi12G000458 vs. ExPASy TrEMBL
Match: A0A5D3D3T6 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002980 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 2   PSENISIPLT-SSQDSTLAPSAATIFVPNPLFEEWIAKGQVLMTLINGTLSTEALAYIVG 61
           P + IS P T SS  +T   S++T  + NP +E+W AK Q  M LIN TLS EAL Y+VG
Sbjct: 65  PPKTISNPTTASSSATTQTTSSSTTEISNPPYEDWQAKDQAFMFLINATLSVEALTYVVG 124

Query: 62  CTSASQ 67
           C S+SQ
Sbjct: 125 CKSSSQ 130

[Close]

BLAST of Bhi12G000458 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 12  SSQDSTLAPSAATIFVPNPLFEEWIAKGQVLMTLINGTLSTEALAYIVGCTSASQ 67
           SS  ST+ P +      NP +E+WIAK Q LMT+IN TLS EALAY+VG TS+ Q
Sbjct: 72  SSSTSTVPPQS------NPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

[Close]

BLAST of Bhi12G000458 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 12  SSQDSTLAPSAATIFVPNPLFEEWIAKGQVLMTLINGTLSTEALAYIVGCTSASQ 67
           SS  ST+ P +      NP +E+WIAK Q LMT+IN TLS EALAY+VG TS+ Q
Sbjct: 72  SSSTSTVPPQS------NPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

[Close]

BLAST of Bhi12G000458 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 12  SSQDSTLAPSAATIFVPNPLFEEWIAKGQVLMTLINGTLSTEALAYIVGCTSASQ 67
           SS  ST+ P +      NP +E+WIAK Q LMT+IN TLS EALAY+VG TS+ Q
Sbjct: 72  SSSTSTVPPQS------NPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

[Close]

BLAST of Bhi12G000458 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 12  SSQDSTLAPSAATIFVPNPLFEEWIAKGQVLMTLINGTLSTEALAYIVGCTSASQ 67
           SS  ST+ P +      NP +E+WIAK Q LMT+IN TLS EALAY+VG TS+ Q
Sbjct: 72  SSSTSTVPPQS------NPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQ 120

The following BLAST results are available for this feature:

BLAST of Bhi12G000458 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12G000458 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12G000458 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK17989.1	5.0e-06	51.52	uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]	[more]
KAE8645659.1	1.9e-05	60.00	hypothetical protein Csa_020439 [Cucumis sativus]	[more]
XP_011658579.1	1.9e-05	60.00	uncharacterized protein LOC105436058 [Cucumis sativus]	[more]
XP_008448007.1	2.5e-05	56.36	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	2.5e-05	56.36	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]

BLAST of Bhi12G000458 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D3T6	2.4e-06	51.52	Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3CLI6	1.2e-05	56.36	T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=...	[more]
A0A1S3BI58	1.2e-05	56.36	uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DWT9	1.2e-05	56.36	uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BIR3	1.2e-05	56.36	uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M000458	Bhi12M000458	mRNA