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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. GTGCTCAAAAAAGACCAAAACAAGCAATTGTTAAAGTCATAACTGAAATTGATGTCAAAGAAGAACATAATCTTCCTACTGAAGTTGACTGTAATCATAGCATTGCACTGAAAGTGGATCTACGGGCAATTACTTTTTTTGAAGCCAAAAAGTGGAGACAATTATGCAAATATACTTGCCTCAATCAAGGAAATGAGAACACAACCACCGCAACGAGA mRNA sequence GTGCTCAAAAAAGACCAAAACAAGCAATTGTTAAAGTCATAACTGAAATTGATGTCAAAGAAGAACATAATCTTCCTACTGAAGTTGACTGTAATCATAGCATTGCACTGAAAGTGGATCTACGGGCAATTACTTTTTTTGAAGCCAAAAAGTGGAGACAATTATGCAAATATACTTGCCTCAATCAAGGAAATGAGAACACAACCACCGCAACGAGA Coding sequence (CDS) GTGCTCAAAAAAGACCAAAACAAGCAATTGTTAAAGTCATAACTGAAATTGATGTCAAAGAAGAACATAATCTTCCTACTGAAGTTGACTGTAATCATAGCATTGCACTGAAAGTGGATCTACGGGCAATTACTTTTTTTGAAGCCAAAAAGTGGAGACAATTATGCAAATATACTTGCCTCAATCAAGGAAATGAGAACACAACCACCGCAACGAGA Protein sequence AQKRPKQAIVKVITEIDVKEEHNLPTEVDCNHSIALKVDLRAITFFEAKKWRQLCKYTCLNQGNENTTTATR
Homology
BLAST of Bhi12G000074 vs. NCBI nr
Match: KAA0055398.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ99330.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05 Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 0 Query: 9 IVKVITEIDVKEEHNLPTEVDCNHSIALKVDLRAITFFEAKKWRQLCKYTCLNQGNENT 68 I K+I +ID +EE + TE D + S ALK+DL+ + EA+KWRQLCKY N+G +T Sbjct: 7 IWKLIFDIDSREEQGIMTEEDSSRS-ALKIDLQNLMLLEARKWRQLCKYAWFNEGGGST 64
BLAST of Bhi12G000074 vs. ExPASy TrEMBL
Match: A0A5D3BHR2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005450 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 1.3e-05 Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 0 Query: 9 IVKVITEIDVKEEHNLPTEVDCNHSIALKVDLRAITFFEAKKWRQLCKYTCLNQGNENT 68 I K+I +ID +EE + TE D + S ALK+DL+ + EA+KWRQLCKY N+G +T Sbjct: 7 IWKLIFDIDSREEQGIMTEEDSSRS-ALKIDLQNLMLLEARKWRQLCKYAWFNEGGGST 64
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAA0055398.1 | 2.7e-05 | 49.15 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYJ993... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3BHR2 | 1.3e-05 | 49.15 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Relationships
The following mRNA feature(s) are a part of this gene:
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