Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCTCTCGCTAGAGTAGGATCACACGCTGATTTTACTTCAGTTCCCAATACAGTCGTCAGGCAGTTATCAGACCATGATGAAACTCAAGAAGATGAAAATTCTTCTGCATCAATAAATAATGAAGTTGAAGATGACGAAGATGATTATGATCCCTTCGCTGATTACAACATCAATGACCCATTTTTAGACTCACAGCCAAATTAG mRNA sequence
ATGAGTTCTCTCGCTAGAGTAGGATCACACGCTGATTTTACTTCAGTTCCCAATACAGTCGTCAGGCAGTTATCAGACCATGATGAAACTCAAGAAGATGAAAATTCTTCTGCATCAATAAATAATGAAGTTGAAGATGACGAAGATGATTATGATCCCTTCGCTGATTACAACATCAATGACCCATTTTTAGACTCACAGCCAAATTAG Coding sequence (CDS)
ATGAGTTCTCTCGCTAGAGTAGGATCACACGCTGATTTTACTTCAGTTCCCAATACAGTCGTCAGGCAGTTATCAGACCATGATGAAACTCAAGAAGATGAAAATTCTTCTGCATCAATAAATAATGAAGTTGAAGATGACGAAGATGATTATGATCCCTTCGCTGATTACAACATCAATGACCCATTTTTAGACTCACAGCCAAATTAG Protein sequence
MSSLARVGSHADFTSVPNTVVRQLSDHDETQEDENSSASINNEVEDDEDDYDPFADYNINDPFLDSQPN
Homology
BLAST of Bhi12G000054 vs. NCBI nr
Match:
KAA0060292.1 (hypothetical protein E6C27_scaffold22G00670 [Cucumis melo var. makuwa] >TYK22042.1 hypothetical protein E5676_scaffold318G00160 [Cucumis melo var. makuwa])
HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 0
Query: 1 MSSLARVGSHADFTSVPNTVVRQLSDHDETQEDENSSASINNEV-EDDEDDYDPFADYNI 60 MSSLA VGS +F V NTV Q+SD D+ Q + NS SINN + EDDEDD++ + DY+I Sbjct: 17 MSSLAGVGSQEEFNFVVNTVAVQISDPDDLQAEANSPISINNVIEEDDEDDFNSYVDYDI 76 Query: 61 NDPFLDSQP 69 NDPFLDSQP Sbjct: 77 NDPFLDSQP 85
BLAST of Bhi12G000054 vs. ExPASy TrEMBL
Match:
A0A5A7UWR6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00160 PE=4 SV=1)
HSP 1 Score: 72.4 bits (176), Expect = 8.3e-10
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 0
Query: 1 MSSLARVGSHADFTSVPNTVVRQLSDHDETQEDENSSASINNEV-EDDEDDYDPFADYNI 60 MSSLA VGS +F V NTV Q+SD D+ Q + NS SINN + EDDEDD++ + DY+I Sbjct: 17 MSSLAGVGSQEEFNFVVNTVAVQISDPDDLQAEANSPISINNVIEEDDEDDFNSYVDYDI 76 Query: 61 NDPFLDSQP 69 NDPFLDSQP Sbjct: 77 NDPFLDSQP 85
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
KAA0060292.1 1.7e-09 60.87 hypothetical protein E6C27_scaffold22G00670 [Cucumis melo var. makuwa] >TYK22042... [more]
Match Name E-value Identity Description
A0A5A7UWR6 8.3e-10 60.87 Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
A T G A G T T C T C T C G C T A G A G T A G G A T C A C A C G C T G A T T T T A C T T C A G T T C C C A A T A C A G T C G T C A G G C A G T T A T C A G A C C A T G A T G A A A C T C A A G A A G A T G A A A A T T C T T C T G C A T C A A T A A A T A A T G A A G T T G A A G A T G A C G A A G A T G A T T A T G A T C C C T T C G C T G A T T A C A A C A T C A A T G A C C C A T T T T T A G A C T C A C A G C C A A A T T A G 20 40 60 80 100 120 140 160 180 200 Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..24
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 39..55
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..69
Relationships
The following mRNA feature(s) are a part of this gene: