Bhi11G002315 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G002315
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Sigma factor binding protein 2
Location	chr11: 74773475 .. 74774592 (+)
RNA-Seq Expression	Bhi11G002315
Synteny	Bhi11G002315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCTATGCTCAATTTGGCAAGTATGAGTATTTTTAAATTTTAAATCAAAAATAAAATTAATGGATTTATATATATAATATTTTATATTTAACTTTTTTTCCTCCTTTATTTTCCAAGAAACCTCCTACTTACAATTTTGCAGCCACCAAACACTTTTCTTCCCCTAATAAATGAACCCCTAAAACCGCCTTTTCCTGAATCCAAACTCGAGCTCGAAAAGGATAAGAAAAAATGGATCGGAGTTTAGTGGTAAGTGAGTTGACGACGACGACGATGACAAAGAAGAAAACAACACGAAAAAGAAAATCATGCGAAGAAAAGAAGCAACCCCTAAAAGTTGTGTACATATCCAACCCGATGATGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAGGAACTAACGGGGCGAGATGCGGAGTTTCCCGACCCGAGTAAATTGTATCCGACCTCATGCGAGATCATGAATGAAATTGAGAAGAAAGTAGTAGCAGAAGGAGAGGGAGATGAGCAAGTGTTATTAGTTGATTCAAGCTTGGATGATGATTTTTTGAGTTCATATGAAAGCTTGGAGGATATATTGAGGAGAGATATGATGGAGAACTTGGGGGCCATCTCTACATCTCTGTTCAATCCTTTGGTTTAGTAATTATTGAGGTTTCATCTTTATTCTCACTCTAAACCCTTCATCCAATTTACTTCATCTAATTTACCTATCTTTAAGCTTTAATTTATGTCCAAAAATAAATGAAAACCACAATATTTTGCAATGTGTATGTTTCCTCACACTATAATAATCCCATCTAACTCATAAATTTTAGCTTTCAATGCTTCTCTCTATATTTCTTTCAAGTTACTTCATAATTTCTAGGCTAAATCATTATTTATAAAAATTAAATTTAAAAAAAGAAAAAAGAAAAAAAGAAAAAAATTGAGTTAACCTTGCTCTAATTTTTTTTTTTTATGTATAACAAAAATGTCCTTACCCTTATTCGTTTAATATGCTCTTGATCTTCCAGGAACATTTTAGGAAAGATATCAATTTATACCCCTAAACGATTTAGAGGTTTTGTCAAATTAAACCTTGATCTAATAATTGTATTAACCCAAAC

mRNA sequence

GAGCTATGCTCAATTTGGCAAGTATGAGTATTTTTAAATTTTAAATCAAAAATAAAATTAATGGATTTATATATATAATATTTTATATTTAACTTTTTTTCCTCCTTTATTTTCCAAGAAACCTCCTACTTACAATTTTGCAGCCACCAAACACTTTTCTTCCCCTAATAAATGAACCCCTAAAACCGCCTTTTCCTGAATCCAAACTCGAGCTCGAAAAGGATAAGAAAAAATGGATCGGAGTTTAGTGGTAAGTGAGTTGACGACGACGACGATGACAAAGAAGAAAACAACACGAAAAAGAAAATCATGCGAAGAAAAGAAGCAACCCCTAAAAGTTGTGTACATATCCAACCCGATGATGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAGGAACTAACGGGGCGAGATGCGGAGTTTCCCGACCCGAGTAAATTGTATCCGACCTCATGCGAGATCATGAATGAAATTGAGAAGAAAGTAGTAGCAGAAGGAGAGGGAGATGAGCAAGTGTTATTAGTTGATTCAAGCTTGGATGATGATTTTTTGAGTTCATATGAAAGCTTGGAGGATATATTGAGGAGAGATATGATGGAGAACTTGGGGGCCATCTCTACATCTCTGTTCAATCCTTTGGTTTAGTAATTATTGAGGTTTCATCTTTATTCTCACTCTAAACCCTTCATCCAATTTACTTCATCTAATTTACCTATCTTTAAGCTTTAATTTATGTCCAAAAATAAATGAAAACCACAATATTTTGCAATGTGTATGTTTCCTCACACTATAATAATCCCATCTAACTCATAAATTTTAGCTTTCAATGCTTCTCTCTATATTTCTTTCAAGTTACTTCATAATTTCTAGGCTAAATCATTATTTATAAAAATTAAATTTAAAAAAAGAAAAAAGAAAAAAAGAAAAAAATTGAGTTAACCTTGCTCTAATTTTTTTTTTTTATGTATAACAAAAATGTCCTTACCCTTATTCGTTTAATATGCTCTTGATCTTCCAGGAACATTTTAGGAAAGATATCAATTTATACCCCTAAACGATTTAGAGGTTTTGTCAAATTAAACCTTGATCTAATAATTGTATTAACCCAAAC

Coding sequence (CDS)

ATGGATCGGAGTTTAGTGGTAAGTGAGTTGACGACGACGACGATGACAAAGAAGAAAACAACACGAAAAAGAAAATCATGCGAAGAAAAGAAGCAACCCCTAAAAGTTGTGTACATATCCAACCCGATGATGGTTCATACTAGCGCGTCTGAATTTAGAGCCTTAGTCCAGGAACTAACGGGGCGAGATGCGGAGTTTCCCGACCCGAGTAAATTGTATCCGACCTCATGCGAGATCATGAATGAAATTGAGAAGAAAGTAGTAGCAGAAGGAGAGGGAGATGAGCAAGTGTTATTAGTTGATTCAAGCTTGGATGATGATTTTTTGAGTTCATATGAAAGCTTGGAGGATATATTGAGGAGAGATATGATGGAGAACTTGGGGGCCATCTCTACATCTCTGTTCAATCCTTTGGTTTAG

Protein sequence

MDRSLVVSELTTTTMTKKKTTRKRKSCEEKKQPLKVVYISNPMMVHTSASEFRALVQELTGRDAEFPDPSKLYPTSCEIMNEIEKKVVAEGEGDEQVLLVDSSLDDDFLSSYESLEDILRRDMMENLGAISTSLFNPLV

Homology

[Close]

BLAST of Bhi11G002315 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 61.6 bits (148), Expect = 5.7e-10
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 10 LTTTTMTKKKTTR-KRKSCEEKK------QPLKVVYISNPMMVHTSASEFRALVQELTGR 69
          LTTT++ KKK +   RKS ++KK      +P+KV YISNPM V T AS+FR LVQELTG+
Sbjct: 9  LTTTSLDKKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQ 68

Query: 70 DAEFPDPSKLYPTSCEIMN 82
          DA    P  +Y  S +  N
Sbjct: 69 DAVDLQPEPIYSPSSDDHN 87

[Close]

BLAST of Bhi11G002315 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 52.0 bits (123), Expect = 4.5e-07
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 1  MDRS----LVVSELTTTTMTKKKTTRKRKSCEEKKQPLKVVYISNPMMVHTSASEFRALV 60
          MD+S    L+    ++++ T+    +KRKS    K P+KV YISNPM V T  S+FR LV
Sbjct: 1  MDQSSSTLLINQRKSSSSPTRIPPKQKRKSTTTHK-PIKVRYISNPMRVETCPSKFRELV 60

Query: 61 QELTGRDAEFPDPSKLYPTSCEIMNEIEKKVVAE 91
          QELTG+DA    PS    T+ ++    E ++  E
Sbjct: 61 QELTGQDAADLPPSPTTFTAVDLHRPCESEMNLE 93

[Close]

BLAST of Bhi11G002315 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.0e-09
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 10 LTTTTMTKKKTTR-KRKSCEEKK------QPLKVVYISNPMMVHTSASEFRALVQELTGR 69
          LTTT++ KKK +   RKS ++KK      +P+KV YISNPM V T AS+FR LVQELTG+
Sbjct: 9  LTTTSLDKKKPSPVSRKSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQ 68

Query: 70 DAEFPDPSKLYPTSCEIMN 82
          DA    P  +Y  S +  N
Sbjct: 69 DAVDLQPEPIYSPSSDDHN 87

[Close]

BLAST of Bhi11G002315 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.3e-06
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 1  MDRS----LVVSELTTTTMTKKKTTRKRKSCEEKKQPLKVVYISNPMMVHTSASEFRALV 60
          MD+S    L+    ++++ T+    +KRKS    K P+KV YISNPM V T  S+FR LV
Sbjct: 1  MDQSSSTLLINQRKSSSSPTRIPPKQKRKSTTTHK-PIKVRYISNPMRVETCPSKFRELV 60

Query: 61 QELTGRDAEFPDPSKLYPTSCEIMNEIEKKVVAE 91
          QELTG+DA    PS    T+ ++    E ++  E
Sbjct: 61 QELTGQDAADLPPSPTTFTAVDLHRPCESEMNLE 93

[Close]

BLAST of Bhi11G002315 vs. NCBI nr
Match: XP_008443611.1 (PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo] >KAA0053883.1 sigma factor binding protein 2 [Cucumis melo var. makuwa] >TYK25522.1 sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 8.7e-53
Identity = 119/142 (83.80%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 1   MDRSLVVSELTTTTMTKKKTTRKRKSCEEKKQPLKVVYISNPMMVHTSASEFRALVQELT 60
           MDR+L+VSELTTTT  KKKTTRKRKSCEE KQPLKVVYISNPM VHTSASEFRALVQELT
Sbjct: 1   MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPSKLYPTSCEI-MNEIEKKVVA-EGEGDEQVLLVDSSLDDDF-LSSYESLED 120
           GRDAEFPDPSK YP SCEI MN++EKKVVA +GE DEQ LL+DSS DDDF  SS+ESLED
Sbjct: 61  GRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLED 120

Query: 121 ILRRDMMENLGAISTSLFNPLV 140
           ILRRD+MEN GAISTSL NPLV
Sbjct: 121 ILRRDVMENFGAISTSLINPLV 142

[Close]

BLAST of Bhi11G002315 vs. NCBI nr
Match: XP_011652185.1 (uncharacterized protein LOC105434994 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-51
Identity = 120/144 (83.33%), Postives = 127/144 (88.19%), Query Frame = 0


Query: 1   MDRSLVVSELTTTTMTKKKTTRKRKSCEEKKQPLKVVYISNPMMVHTSASEFRALVQELT 60
           MDRSL+VSELTTT     KTTRKRKSCEE KQPLKVVYISNPM VHTSASEFRALVQELT
Sbjct: 1   MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPSKLYP-TSCEIMN--EIEKKVV-AEGEGDEQVLLVDSSLDDDFL-SSYESL 120
           GRDAEFPDP+K YP +SCEIMN  ++EKKVV AEGE DEQ LL+DSS DDDFL SSYESL
Sbjct: 61  GRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL 120

Query: 121 EDILRRDMMENLGAISTSLFNPLV 140
           EDILRRD+MEN GAISTSLFNPLV
Sbjct: 121 EDILRRDVMENFGAISTSLFNPLV 144

[Close]

BLAST of Bhi11G002315 vs. NCBI nr
Match: KAE8651179.1 (hypothetical protein Csa_002123, partial [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 5.9e-33
Identity = 84/101 (83.17%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 43  MMVHTSASEFRALVQELTGRDAEFPDPSKLYP-TSCEIMN--EIEKKVV-AEGEGDEQVL 102
           M VHTSASEFRALVQELTGRDAEFPDP+K YP +SCEIMN  ++EKKVV AEGE DEQ L
Sbjct: 1   MRVHTSASEFRALVQELTGRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQEL 60

Query: 103 LVDSSLDDDFL-SSYESLEDILRRDMMENLGAISTSLFNPL 139
           L+DSS DDDFL SSYESLEDILRRD+MEN GAISTSLFNPL
Sbjct: 61  LIDSSCDDDFLRSSYESLEDILRRDVMENFGAISTSLFNPL 101

[Close]

BLAST of Bhi11G002315 vs. NCBI nr
Match: XP_022147780.1 (sigma factor binding protein 2, chloroplastic-like [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-24
Identity = 76/140 (54.29%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 1   MDRSLVVSELTTTTMTKKKTTRKRKSCEEKKQPLKVVYISNPMMVHTSASEFRALVQELT 60
           MDR+L+VSE+       KK TRKRK   +K QPLKVVYISNPM VHTSASEFRALVQELT
Sbjct: 1   MDRNLIVSEME----PMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPSKLYPTSCEIMNEIEKKVVAEGEGDEQVLL-----VDSSLDDDFLSSYESL 120
           GRDAEFPDP+K +  S ++  E+  +   EG+ DE+  L     ++ S DD   S YES 
Sbjct: 61  GRDAEFPDPAKFHQASIDV-GEMNLEKNREGDDDEEASLDVATTMEDSNDDFLESPYESF 120

Query: 121 EDILRRDM-MENLGAISTSL 135
           E++L R+M MEN    S S+
Sbjct: 121 EEMLMREMLMENFAVPSRSV 135

[Close]

BLAST of Bhi11G002315 vs. NCBI nr
Match: XP_023539403.1 (uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 90.9 bits (224), Expect = 9.4e-15
Identity = 61/122 (50.00%), Postives = 75/122 (61.48%), Query Frame = 0


Query: 17  KKKTTRKRKSCEEKKQPLKVVYISNPMMVHTSASEFRALVQELTGRDAEFPDPSKLYPTS 76
           +K+  RKRK C+ K QPLKVVYISNPM V  SA+EFR LVQ+LTG+DA    PS     S
Sbjct: 14  RKERRRKRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQQLTGQDAPKFPPS----AS 73

Query: 77  CEIMNEIEKKVVAEGEGDEQVLLV--------DSSLDDDFL-SSYESLEDILRRDMMENL 130
            E      +K+  + + D+Q LL+        DSS  DDFL  SYESLE I  RDM++ L
Sbjct: 74  VETPETNVRKIQDDDDDDDQQLLLHWAAAIMEDSS--DDFLGGSYESLEGIFMRDMVDRL 129

[Close]

BLAST of Bhi11G002315 vs. ExPASy TrEMBL
Match: A0A5D3DPQ4 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006730 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.2e-53
Identity = 119/142 (83.80%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 1   MDRSLVVSELTTTTMTKKKTTRKRKSCEEKKQPLKVVYISNPMMVHTSASEFRALVQELT 60
           MDR+L+VSELTTTT  KKKTTRKRKSCEE KQPLKVVYISNPM VHTSASEFRALVQELT
Sbjct: 1   MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPSKLYPTSCEI-MNEIEKKVVA-EGEGDEQVLLVDSSLDDDF-LSSYESLED 120
           GRDAEFPDPSK YP SCEI MN++EKKVVA +GE DEQ LL+DSS DDDF  SS+ESLED
Sbjct: 61  GRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLED 120

Query: 121 ILRRDMMENLGAISTSLFNPLV 140
           ILRRD+MEN GAISTSL NPLV
Sbjct: 121 ILRRDVMENFGAISTSLINPLV 142

[Close]

BLAST of Bhi11G002315 vs. ExPASy TrEMBL
Match: A0A1S3B8H6 (uncharacterized protein LOC103487167 OS=Cucumis melo OX=3656 GN=LOC103487167 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.2e-53
Identity = 119/142 (83.80%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 1   MDRSLVVSELTTTTMTKKKTTRKRKSCEEKKQPLKVVYISNPMMVHTSASEFRALVQELT 60
           MDR+L+VSELTTTT  KKKTTRKRKSCEE KQPLKVVYISNPM VHTSASEFRALVQELT
Sbjct: 1   MDRTLLVSELTTTTTKKKKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPSKLYPTSCEI-MNEIEKKVVA-EGEGDEQVLLVDSSLDDDF-LSSYESLED 120
           GRDAEFPDPSK YP SCEI MN++EKKVVA +GE DEQ LL+DSS DDDF  SS+ESLED
Sbjct: 61  GRDAEFPDPSKFYPASCEIVMNDLEKKVVADQGEDDEQELLIDSSCDDDFWRSSFESLED 120

Query: 121 ILRRDMMENLGAISTSLFNPLV 140
           ILRRD+MEN GAISTSL NPLV
Sbjct: 121 ILRRDVMENFGAISTSLINPLV 142

[Close]

BLAST of Bhi11G002315 vs. ExPASy TrEMBL
Match: A0A0A0LFH5 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G820480 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.1e-52
Identity = 120/144 (83.33%), Postives = 127/144 (88.19%), Query Frame = 0


Query: 1   MDRSLVVSELTTTTMTKKKTTRKRKSCEEKKQPLKVVYISNPMMVHTSASEFRALVQELT 60
           MDRSL+VSELTTT     KTTRKRKSCEE KQPLKVVYISNPM VHTSASEFRALVQELT
Sbjct: 1   MDRSLLVSELTTTMKKNTKTTRKRKSCEENKQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPSKLYP-TSCEIMN--EIEKKVV-AEGEGDEQVLLVDSSLDDDFL-SSYESL 120
           GRDAEFPDP+K YP +SCEIMN  ++EKKVV AEGE DEQ LL+DSS DDDFL SSYESL
Sbjct: 61  GRDAEFPDPTKFYPASSCEIMNDDDVEKKVVAAEGEEDEQELLIDSSCDDDFLRSSYESL 120

Query: 121 EDILRRDMMENLGAISTSLFNPLV 140
           EDILRRD+MEN GAISTSLFNPLV
Sbjct: 121 EDILRRDVMENFGAISTSLFNPLV 144

[Close]

BLAST of Bhi11G002315 vs. ExPASy TrEMBL
Match: A0A6J1D137 (sigma factor binding protein 2, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016633 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 76/140 (54.29%), Postives = 94/140 (67.14%), Query Frame = 0


Query: 1   MDRSLVVSELTTTTMTKKKTTRKRKSCEEKKQPLKVVYISNPMMVHTSASEFRALVQELT 60
           MDR+L+VSE+       KK TRKRK   +K QPLKVVYISNPM VHTSASEFRALVQELT
Sbjct: 1   MDRNLIVSEME----PMKKETRKRKLSVQKNQPLKVVYISNPMRVHTSASEFRALVQELT 60

Query: 61  GRDAEFPDPSKLYPTSCEIMNEIEKKVVAEGEGDEQVLL-----VDSSLDDDFLSSYESL 120
           GRDAEFPDP+K +  S ++  E+  +   EG+ DE+  L     ++ S DD   S YES 
Sbjct: 61  GRDAEFPDPAKFHQASIDV-GEMNLEKNREGDDDEEASLDVATTMEDSNDDFLESPYESF 120

Query: 121 EDILRRDM-MENLGAISTSL 135
           E++L R+M MEN    S S+
Sbjct: 121 EEMLMREMLMENFAVPSRSV 135

[Close]

BLAST of Bhi11G002315 vs. ExPASy TrEMBL
Match: A0A6J1FKR4 (uncharacterized protein LOC111446639 OS=Cucurbita moschata OX=3662 GN=LOC111446639 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 56/118 (47.46%), Postives = 74/118 (62.71%), Query Frame = 0


Query: 17  KKKTTRKRKSCEEKKQPLKVVYISNPMMVHTSASEFRALVQELTGRDAEFPDPSKLYPTS 76
           +K+  R RK C+ K QPLKVVYISNPM V  SA+EFR LVQELTG+DA    PS    +S
Sbjct: 14  RKERRRNRKPCDRKNQPLKVVYISNPMRVQASAAEFRGLVQELTGQDAPKFPPS---ASS 73

Query: 77  CEIMN-EIEKKVVAEGEGDEQVLLVDSSLDDD---FL-SSYESLEDILRRDMMENLGA 130
             +   E   + + + + DEQ+LL  ++++D    FL  SYES E I  RDM++ L A
Sbjct: 74  ASVQTPETNVRKIQDDDDDEQLLLHWAAMEDSSDGFLGGSYESSEGIFMRDMVDKLAA 128

The following BLAST results are available for this feature:

BLAST of Bhi11G002315 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	5.7e-10	50.63	sigma factor binding protein 1	[more]
AT2G41180.1	4.5e-07	40.43	VQ motif-containing protein	[more]

BLAST of Bhi11G002315 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	8.0e-09	50.63	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	6.3e-06	40.43	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Bhi11G002315 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443611.1	8.7e-53	83.80	PREDICTED: uncharacterized protein LOC103487167 [Cucumis melo] >KAA0053883.1 sig...	[more]
XP_011652185.1	1.3e-51	83.33	uncharacterized protein LOC105434994 [Cucumis sativus]	[more]
KAE8651179.1	5.9e-33	83.17	hypothetical protein Csa_002123, partial [Cucumis sativus]	[more]
XP_022147780.1	3.8e-24	54.29	sigma factor binding protein 2, chloroplastic-like [Momordica charantia]	[more]
XP_023539403.1	9.4e-15	50.00	uncharacterized protein LOC111800056 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Bhi11G002315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPQ4	4.2e-53	83.80	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B8H6	4.2e-53	83.80	uncharacterized protein LOC103487167 OS=Cucumis melo OX=3656 GN=LOC103487167 PE=...	[more]
A0A0A0LFH5	6.1e-52	83.33	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G820480 PE=4 SV=...	[more]
A0A6J1D137	1.8e-24	54.29	sigma factor binding protein 2, chloroplastic-like OS=Momordica charantia OX=367...	[more]
A0A6J1FKR4	1.1e-13	47.46	uncharacterized protein LOC111446639 OS=Cucurbita moschata OX=3662 GN=LOC1114466...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 39..64 e-value: 1.7E-13 score: 49.8
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..133
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 16..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M002315	Bhi11M002315	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity