Bhi11G002299 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G002299
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr11: 74200076 .. 74200354 (+)
RNA-Seq Expression	Bhi11G002299
Synteny	Bhi11G002299

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGAATGCTATACAACTTCTTTCCTACAGATTTCTACTACCCTCGTCAACCACCACCGCCTCCTAAGTCCGTTCAAATCTCCGCCAAGCCGCTGCCGTCTGCGATTGTTCCTTCGTCGAGCAAAACAGTTGAAGATGATCGAGAAGCTGACCGGTCACTTGACAAACTCAAAGCATCGTTATCGTCGTCGTCCATGACCGTCGACAAGAAGGTGGTCGGCGCTTCAACTTCCATGGCGTTTCTTCCTCCTCCCTCTTATATCCTCAAGCAATGA

mRNA sequence

ATGGCGGGAATGCTATACAACTTCTTTCCTACAGATTTCTACTACCCTCGTCAACCACCACCGCCTCCTAAGTCCGTTCAAATCTCCGCCAAGCCGCTGCCGTCTGCGATTGTTCCTTCGTCGAGCAAAACAGTTGAAGATGATCGAGAAGCTGACCGGTCACTTGACAAACTCAAAGCATCGTTATCGTCGTCGTCCATGACCGTCGACAAGAAGGTGGTCGGCGCTTCAACTTCCATGGCGTTTCTTCCTCCTCCCTCTTATATCCTCAAGCAATGA

Coding sequence (CDS)

ATGGCGGGAATGCTATACAACTTCTTTCCTACAGATTTCTACTACCCTCGTCAACCACCACCGCCTCCTAAGTCCGTTCAAATCTCCGCCAAGCCGCTGCCGTCTGCGATTGTTCCTTCGTCGAGCAAAACAGTTGAAGATGATCGAGAAGCTGACCGGTCACTTGACAAACTCAAAGCATCGTTATCGTCGTCGTCCATGACCGTCGACAAGAAGGTGGTCGGCGCTTCAACTTCCATGGCGTTTCTTCCTCCTCCCTCTTATATCCTCAAGCAATGA

Protein sequence

MAGMLYNFFPTDFYYPRQPPPPPKSVQISAKPLPSAIVPSSSKTVEDDREADRSLDKLKASLSSSSMTVDKKVVGASTSMAFLPPPSYILKQ

Homology

[Close]

BLAST of Bhi11G002299 vs. NCBI nr
Match: WP_217833416.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 102.8 bits (255), Expect = 1.6e-18
Identity = 59/75 (78.67%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 20 PPPPKSVQISAKPLPSAIVPSSSKTVEDDREADRSLDKLKA--SLSSSSMTVDKKVVGAS 79
          P PP SVQISA+PLPS +VP   KTVEDDREAD SLDK KA  SL SSSM +D KVVGAS
Sbjct: 5  PSPPNSVQISAEPLPSTVVPPPRKTVEDDREADWSLDKPKASPSLLSSSMAIDTKVVGAS 64

Query: 80 TSMAFLPPPSYILKQ 93
          TSMAFLPPPSYILKQ
Sbjct: 65 TSMAFLPPPSYILKQ 79

[Close]

BLAST of Bhi11G002299 vs. NCBI nr
Match: KAA0053873.1 (hypothetical protein E6C27_scaffold135G002660 [Cucumis melo var. makuwa] >TYK25531.1 hypothetical protein E5676_scaffold352G006830 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-17
Identity = 58/92 (63.04%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 1  MAGMLYNFFPTDFYYPRQPPPPPKSVQISAKPLPSAIVPSSSKTVEDDREADRSLDKLKA 60
          MAGM  NFFPTDFYYPR     P   QI+AKPL        SKTVEDDRE +R    L+ 
Sbjct: 1  MAGMPCNFFPTDFYYPRS--AQPHFAQIAAKPL--------SKTVEDDREVER----LEK 60

Query: 61 SLSSSSMTVDKKVVGASTSMAFLPPPSYILKQ 93
          +LS SS+ ++KK+VGASTSMAFLPPPSYILKQ
Sbjct: 61 ALSLSSVAIEKKMVGASTSMAFLPPPSYILKQ 78

[Close]

BLAST of Bhi11G002299 vs. NCBI nr
Match: KAG6580888.1 (hypothetical protein SDJN03_20890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 51/95 (53.68%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 1  MAGMLYNFFPTDFYYPRQPPPPPKSVQISAKPLPSAIVPSSS----KTVEDDREADRSLD 60
          MAGM YNFFPTDFYYPR PPPPP        P P+++   ++    +TVED++  ++S+D
Sbjct: 1  MAGMQYNFFPTDFYYPRPPPPPP--------PPPNSVKMLTTLPLRRTVEDEK-GEQSVD 60

Query: 61 KLKASLSSSSMTVDKKVVGASTSMAFLPPPSYILK 92
          + KA  S +SM ++K VVGAS S AFLPPPS+ILK
Sbjct: 61 EPKA--SPASMAMNKTVVGASISTAFLPPPSHILK 84

[Close]

BLAST of Bhi11G002299 vs. ExPASy TrEMBL
Match: A0A5A7UD60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006830 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 58/92 (63.04%), Postives = 66/92 (71.74%), Query Frame = 0


Query: 1  MAGMLYNFFPTDFYYPRQPPPPPKSVQISAKPLPSAIVPSSSKTVEDDREADRSLDKLKA 60
          MAGM  NFFPTDFYYPR     P   QI+AKPL        SKTVEDDRE +R    L+ 
Sbjct: 1  MAGMPCNFFPTDFYYPRS--AQPHFAQIAAKPL--------SKTVEDDREVER----LEK 60

Query: 61 SLSSSSMTVDKKVVGASTSMAFLPPPSYILKQ 93
          +LS SS+ ++KK+VGASTSMAFLPPPSYILKQ
Sbjct: 61 ALSLSSVAIEKKMVGASTSMAFLPPPSYILKQ 78

The following BLAST results are available for this feature:

BLAST of Bhi11G002299 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G002299 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G002299 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833416.1	1.6e-18	78.67	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
KAA0053873.1	8.7e-17	63.04	hypothetical protein E6C27_scaffold135G002660 [Cucumis melo var. makuwa] >TYK255...	[more]
KAG6580888.1	1.3e-12	53.68	hypothetical protein SDJN03_20890, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Bhi11G002299 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UD60	4.2e-17	63.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M002299	Bhi11M002299	mRNA