Bhi11G002229 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G002229
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	DNA-directed RNA polymerase subunit
Location	chr11: 72079755 .. 72080192 (-)
RNA-Seq Expression	Bhi11G002229
Synteny	Bhi11G002229

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATGCAAAGTAGGCTGTAGCCCATAAAAGGGTCAATGCCATTAGAGGTTGCAAGCCTGTGAGTGTAAGTAGTGGAACTGAAGGAATATCCTCACTTGAGGAAGAGACTACTGTTATCAATACACTGGAAGGAGATGCATTTGATGACACTGCAACCAAGTCCCGTATAGAAGATTCTGAGGAAGTTCCCCCGGAAATTTTCATGCAAAAGAATTTCTCCTCAGGACAGTTGATGCCATCTGAGGTACTGCCAGTTTATTTTGTGATTGCAGGTCAAGTTTTCCCTTTCCTTATCTTCATATCATTTTTTAATAATAGGTTAAAGATATCCTGAAGCGTTTGTGGAAAAATGAAGCTACTCTCTGTTCCTTTATTAGTGATATTCGTCAGCAGGGACATGGAAATAAGGCAGGCTATTCCATGTTTTTCTTAG

mRNA sequence

ATGGTGGATGCAAAGGTCAATGCCATTAGAGGTTGCAAGCCTGTGAGTGTAAGTAGTGGAACTGAAGGAATATCCTCACTTGAGGAAGAGACTACTGTTATCAATACACTGGAAGGAGATGCATTTGATGACACTGCAACCAAGTCCCGTATAGAAGATTCTGAGGAAGTTCCCCCGGAAATTTTCATGCAAAAGAATTTCTCCTCAGGACAGTTGATGCCATCTGAGGTACTGCCACTACTCTCTGTTCCTTTATTAGTGATATTCGTCAGCAGGGACATGGAAATAAGGCAGGCTATTCCATGTTTTTCTTAG

Coding sequence (CDS)

ATGGTGGATGCAAAGGTCAATGCCATTAGAGGTTGCAAGCCTGTGAGTGTAAGTAGTGGAACTGAAGGAATATCCTCACTTGAGGAAGAGACTACTGTTATCAATACACTGGAAGGAGATGCATTTGATGACACTGCAACCAAGTCCCGTATAGAAGATTCTGAGGAAGTTCCCCCGGAAATTTTCATGCAAAAGAATTTCTCCTCAGGACAGTTGATGCCATCTGAGGTACTGCCACTACTCTCTGTTCCTTTATTAGTGATATTCGTCAGCAGGGACATGGAAATAAGGCAGGCTATTCCATGTTTTTCTTAG

Protein sequence

MVDAKVNAIRGCKPVSVSSGTEGISSLEEETTVINTLEGDAFDDTATKSRIEDSEEVPPEIFMQKNFSSGQLMPSEVLPLLSVPLLVIFVSRDMEIRQAIPCFS

Homology

[Close]

BLAST of Bhi11G002229 vs. NCBI nr
Match: XP_038906281.1 (DNA-directed RNA polymerase I subunit 1 [Benincasa hispida] >XP_038906282.1 DNA-directed RNA polymerase I subunit 1 [Benincasa hispida] >XP_038906283.1 DNA-directed RNA polymerase I subunit 1 [Benincasa hispida] >XP_038906284.1 DNA-directed RNA polymerase I subunit 1 [Benincasa hispida])

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-25
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 0


Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEET-----TVINTLEGDAFDDTATKSRIEDSEEVPP 64
           + NAIRGCKPVSVSSGTEGISSLEEET     TVIN LEGDAFDDTATK+ IEDSEEVPP
Sbjct: 223 RANAIRGCKPVSVSSGTEGISSLEEETTISHPTVINILEGDAFDDTATKAPIEDSEEVPP 282

Query: 65  EIFMQKNFSSGQLMPSEVLPLL 82
           EIFMQKNFSSGQLMPSEV  ++
Sbjct: 283 EIFMQKNFSSGQLMPSEVKDIM 304

[Close]

BLAST of Bhi11G002229 vs. NCBI nr
Match: XP_022154235.1 (DNA-directed RNA polymerase I subunit 1 [Momordica charantia])

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-23
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEE-----TTVINTLEGDAFDDTATKSRIEDSEEVPP 64
           + NAIRGCKPVSV SG EGISSLEEE     TTVINT EGDAFDDTATK+  EDSEEVPP
Sbjct: 215 RANAIRGCKPVSVISGAEGISSLEEETTFSHTTVINTSEGDAFDDTATKAPTEDSEEVPP 274

Query: 65  EIFMQKNFSSGQLMPSEV 78
           E+FMQKNFSSG LMPSEV
Sbjct: 275 EVFMQKNFSSGHLMPSEV 292

[Close]

BLAST of Bhi11G002229 vs. NCBI nr
Match: XP_023538901.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.4 bits (259), Expect = 6.1e-19
Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEE-----TTVINTLEGDAFDDTATKSRIEDSEEVPP 64
           + NAIRGCKP SVSSG EGISS+EEE     TTVIN  E D FDDTATK+ +EDSEEV P
Sbjct: 215 RANAIRGCKPASVSSGAEGISSIEEENTVPQTTVINMSEVDVFDDTATKASVEDSEEVSP 274

Query: 65  EIFMQKNFSSGQLMPSEVLPLL 82
           EIF+ KNFS+G L+PSEV  +L
Sbjct: 275 EIFVPKNFSAGHLLPSEVKHIL 296

[Close]

BLAST of Bhi11G002229 vs. NCBI nr
Match: XP_022938891.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita moschata])

HSP 1 Score: 104.4 bits (259), Expect = 6.1e-19
Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEE-----TTVINTLEGDAFDDTATKSRIEDSEEVPP 64
           + NAIRGCKP SVSSG EGISS+EEE     TTVIN  E D FDDTATK+ +EDSEEV P
Sbjct: 215 RANAIRGCKPASVSSGAEGISSIEEENTVPQTTVINMSEVDVFDDTATKASVEDSEEVSP 274

Query: 65  EIFMQKNFSSGQLMPSEVLPLL 82
           EIF+ KNFS+G L+PSEV  +L
Sbjct: 275 EIFVPKNFSAGHLLPSEVKHIL 296

[Close]

BLAST of Bhi11G002229 vs. NCBI nr
Match: XP_022971295.1 (DNA-directed RNA polymerase I subunit 1 [Cucurbita maxima])

HSP 1 Score: 100.9 bits (250), Expect = 6.8e-18
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEE-----TTVINTLEGDAFDDTATKSRIEDSEEVPP 64
           + NAIRGCKP SVSSG EGISS+EEE     TTVIN  E D FDDTATK+ +EDSEEV P
Sbjct: 215 RANAIRGCKPASVSSGAEGISSIEEENTVPQTTVINMSEVDVFDDTATKASVEDSEEVSP 274

Query: 65  EIFMQKNFSSGQLMPSEVLPLL 82
           EIF+ KNFS+  L+PSEV  +L
Sbjct: 275 EIFVPKNFSTVHLLPSEVKHIL 296

[Close]

BLAST of Bhi11G002229 vs. ExPASy TrEMBL
Match: A0A6J1DJ24 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111021540 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.5e-23
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEE-----TTVINTLEGDAFDDTATKSRIEDSEEVPP 64
           + NAIRGCKPVSV SG EGISSLEEE     TTVINT EGDAFDDTATK+  EDSEEVPP
Sbjct: 215 RANAIRGCKPVSVISGAEGISSLEEETTFSHTTVINTSEGDAFDDTATKAPTEDSEEVPP 274

Query: 65  EIFMQKNFSSGQLMPSEV 78
           E+FMQKNFSSG LMPSEV
Sbjct: 275 EVFMQKNFSSGHLMPSEV 292

[Close]

BLAST of Bhi11G002229 vs. ExPASy TrEMBL
Match: A0A6J1FEE5 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111444963 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.0e-19
Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEE-----TTVINTLEGDAFDDTATKSRIEDSEEVPP 64
           + NAIRGCKP SVSSG EGISS+EEE     TTVIN  E D FDDTATK+ +EDSEEV P
Sbjct: 215 RANAIRGCKPASVSSGAEGISSIEEENTVPQTTVINMSEVDVFDDTATKASVEDSEEVSP 274

Query: 65  EIFMQKNFSSGQLMPSEVLPLL 82
           EIF+ KNFS+G L+PSEV  +L
Sbjct: 275 EIFVPKNFSAGHLLPSEVKHIL 296

[Close]

BLAST of Bhi11G002229 vs. ExPASy TrEMBL
Match: A0A6J1I5C4 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470054 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-18
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEE-----TTVINTLEGDAFDDTATKSRIEDSEEVPP 64
           + NAIRGCKP SVSSG EGISS+EEE     TTVIN  E D FDDTATK+ +EDSEEV P
Sbjct: 215 RANAIRGCKPASVSSGAEGISSIEEENTVPQTTVINMSEVDVFDDTATKASVEDSEEVSP 274

Query: 65  EIFMQKNFSSGQLMPSEVLPLL 82
           EIF+ KNFS+  L+PSEV  +L
Sbjct: 275 EIFVPKNFSTVHLLPSEVKHIL 296

[Close]

BLAST of Bhi11G002229 vs. ExPASy TrEMBL
Match: A0A5A7TQ71 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G00270 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEETTVINTLEGDAFDDTATKSRIEDSEEVPPEIFMQ 64
           + NAIR  KPVSVSSG EG+SSLEEETT              T++ +EDSE+V PEIFMQ
Sbjct: 308 RANAIRRSKPVSVSSGAEGVSSLEEETT--------------TEATVEDSEDVSPEIFMQ 367

Query: 65  KNFSSGQLMPSEVLPLL 82
           KNFSSG L+PSEV  +L
Sbjct: 368 KNFSSGHLLPSEVKDIL 370

[Close]

BLAST of Bhi11G002229 vs. ExPASy TrEMBL
Match: A0A5D3DP64 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005770 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 5   KVNAIRGCKPVSVSSGTEGISSLEEETTVINTLEGDAFDDTATKSRIEDSEEVPPEIFMQ 64
           + NAIR  KPVSVSSG EG+SSLEEETT              T++ +EDSE+V PEIFMQ
Sbjct: 220 RANAIRRSKPVSVSSGAEGVSSLEEETT--------------TEATVEDSEDVSPEIFMQ 279

Query: 65  KNFSSGQLMPSEVLPLL 82
           KNFSSG L+PSEV  +L
Sbjct: 280 KNFSSGHLLPSEVKDIL 282

The following BLAST results are available for this feature:

BLAST of Bhi11G002229 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G002229 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G002229 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906281.1	1.2e-25	82.93	DNA-directed RNA polymerase I subunit 1 [Benincasa hispida] >XP_038906282.1 DNA-...	[more]
XP_022154235.1	3.1e-23	80.77	DNA-directed RNA polymerase I subunit 1 [Momordica charantia]	[more]
XP_023538901.1	6.1e-19	68.29	DNA-directed RNA polymerase I subunit 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022938891.1	6.1e-19	68.29	DNA-directed RNA polymerase I subunit 1 [Cucurbita moschata]	[more]
XP_022971295.1	6.8e-18	67.07	DNA-directed RNA polymerase I subunit 1 [Cucurbita maxima]	[more]

BLAST of Bhi11G002229 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJ24	1.5e-23	80.77	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110215...	[more]
A0A6J1FEE5	3.0e-19	68.29	DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11144496...	[more]
A0A6J1I5C4	3.3e-18	67.07	DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470054 ...	[more]
A0A5A7TQ71	1.6e-12	59.74	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3DP64	1.6e-12	59.74	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M002229	Bhi11M002229	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008270	zinc ion binding