Bhi11G002226 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G002226
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Arabinogalactan peptide 23
Location	chr11: 72026709 .. 72027258 (+)
RNA-Seq Expression	Bhi11G002226
Synteny	Bhi11G002226

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCAGTTCAAGCTCAATCATTGCAAAGAATTAAGAAGATCATTGCTTTTTCTAAGCGGGTCTCTTCTTTCTCTACAAACCTCTAACTTTCTCAGTTTCTTCTTTCTTTATCACCATGGACATGAAGAAGGTGACCTGTGCCGTCCTCGTCTCCGCTGCCGTCATGAGTGCTACTATGGCCTCTGGTGAAGGCCCCGCTCCAGCACCTGGCCTGTCCTCCGACGCGGCAGCTGCTGCTTTACCAGCTGTTGGAGCTTTCATTGGTGCTTCTCTTGCATCTTTCTTTGCCTATTACTTGTAAGAAGCTAAGTAAAGAATAGGAAGGCATAGGGAGGAATGAAGGGAAAAAAATATTATGTAAACATGGGAAAGAGAAACTCTGGTTAGTGGTTGGTGTGTGGCTTGGAAGGAAAAAAAAGTATTGTTTATTTGAATTTGGTTTGAGAATTTAATGAACAAAATCTTTGTTGAATTATATATGTTTACCCTTTTTGTCATGAATTTATATATCTAATTATTATGGCTTATTGATGTCTATATTTATATATTA

mRNA sequence

GCTCAGTTCAAGCTCAATCATTGCAAAGAATTAAGAAGATCATTGCTTTTTCTAAGCGGGTCTCTTCTTTCTCTACAAACCTCTAACTTTCTCAGTTTCTTCTTTCTTTATCACCATGGACATGAAGAAGGTGACCTGTGCCGTCCTCGTCTCCGCTGCCGTCATGAGTGCTACTATGGCCTCTGGTGAAGGCCCCGCTCCAGCACCTGGCCTGTCCTCCGACGCGGCAGCTGCTGCTTTACCAGCTGTTGGAGCTTTCATTGGTGCTTCTCTTGCATCTTTCTTTGCCTATTACTTGTAAGAAGCTAAGTAAAGAATAGGAAGGCATAGGGAGGAATGAAGGGAAAAAAATATTATGTAAACATGGGAAAGAGAAACTCTGGTTAGTGGTTGGTGTGTGGCTTGGAAGGAAAAAAAAGTATTGTTTATTTGAATTTGGTTTGAGAATTTAATGAACAAAATCTTTGTTGAATTATATATGTTTACCCTTTTTGTCATGAATTTATATATCTAATTATTATGGCTTATTGATGTCTATATTTATATATTA

Coding sequence (CDS)

ATGGACATGAAGAAGGTGACCTGTGCCGTCCTCGTCTCCGCTGCCGTCATGAGTGCTACTATGGCCTCTGGTGAAGGCCCCGCTCCAGCACCTGGCCTGTCCTCCGACGCGGCAGCTGCTGCTTTACCAGCTGTTGGAGCTTTCATTGGTGCTTCTCTTGCATCTTTCTTTGCCTATTACTTGTAA

Protein sequence

MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYYL

Homology

[Close]

BLAST of Bhi11G002226 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-09
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          M+MKK+ C VL +AA M+A MA+ E  APAPG +S AA+AALPA+G+ +GASL S F+YY
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPAS-AASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Bhi11G002226 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 2.3e-08
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          M+MKK+ C V+ +AA M+A MA+  G APAPG ++  A+ A+PA+G+ +GASL S FAYY
Sbjct: 1  MEMKKIACGVVFAAASMTAVMAAEVG-APAPGPAASGASVAVPALGSLVGASLVSLFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Bhi11G002226 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 3.0e-08
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          M+MKK+ C VL +AA M+A MA+ E  APAPG +S AA+AALPA+G+ +GASL S F+YY
Sbjct: 1  MEMKKIACGVLFAAASMTAVMAAEEVGAPAPGPAS-AASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Bhi11G002226 vs. NCBI nr
Match: XP_038906349.1 (arabinogalactan protein 23 [Benincasa hispida])

HSP 1 Score: 105.5 bits (262), Expect = 1.6e-19
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY
Sbjct: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of Bhi11G002226 vs. NCBI nr
Match: KAA0043704.1 (Arabinogalactan peptide 23 [Cucumis melo var. makuwa] >TYK25430.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 7.8e-14
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          MDMKKVTCAVLV+AA +SATMA+ EGPAPAP LSSD A AALPAVGAFIGASL SFFAYY
Sbjct: 1  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSD-ATAALPAVGAFIGASLVSFFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Bhi11G002226 vs. NCBI nr
Match: KAG7027762.1 (hypothetical protein SDJN02_08939, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.7 bits (182), Expect = 3.1e-10
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          M MKKVTCA+L +AA +SA +AS E PA APG SSDAAAAA+PAVGAFIGAS+A+ FAYY
Sbjct: 1  MAMKKVTCALLFAAATVSAVVASAEAPALAPGPSSDAAAAAVPAVGAFIGASVATLFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of Bhi11G002226 vs. NCBI nr
Match: KAG6596222.1 (putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 42/61 (68.85%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          M + K+TCA+L +AA ++A +AS E PA APG SSDAAAAA+PAVGAFIGAS+AS FAYY
Sbjct: 1  MAINKLTCALLFAAATVTAVVASTEAPALAPGPSSDAAAAAVPAVGAFIGASVASLFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of Bhi11G002226 vs. NCBI nr
Match: XP_022746067.1 (arabinogalactan peptide 23-like [Durio zibethinus])

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          MDMKK++CAV+V+AA MSA MAS + PA APG +S AA+A LP +G+ +GASL SFFAY+
Sbjct: 1  MDMKKISCAVIVAAASMSAVMASTDAPAAAPGPASSAASATLPVLGSLVGASLVSFFAYH 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of Bhi11G002226 vs. ExPASy TrEMBL
Match: A0A5D3DQ83 (Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005730 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.8e-14
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          MDMKKVTCAVLV+AA +SATMA+ EGPAPAP LSSD A AALPAVGAFIGASL SFFAYY
Sbjct: 1  MDMKKVTCAVLVAAAAVSATMATSEGPAPAPSLSSD-ATAALPAVGAFIGASLVSFFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of Bhi11G002226 vs. ExPASy TrEMBL
Match: A0A6P5Z0H7 (arabinogalactan peptide 23-like OS=Durio zibethinus OX=66656 GN=LOC111296195 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.1e-09
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          MDMKK++CAV+V+AA MSA MAS + PA APG +S AA+A LP +G+ +GASL SFFAY+
Sbjct: 1  MDMKKISCAVIVAAASMSAVMASTDAPAAAPGPASSAASATLPVLGSLVGASLVSFFAYH 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of Bhi11G002226 vs. ExPASy TrEMBL
Match: A0A059DIY4 (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02403 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          MDMKK++CAVLV+AA MSA +AS + PAPAPG SS  A+AALP  G+ +GAS+ SFFAYY
Sbjct: 34 MDMKKISCAVLVAAASMSAVLASDDSPAPAPGPSS-GASAALPVFGSLVGASVVSFFAYY 93

Query: 61 L 62
          L
Sbjct: 94 L 93

[Close]

BLAST of Bhi11G002226 vs. ExPASy TrEMBL
Match: A0A6P6APJ2 (arabinogalactan peptide 23-like OS=Durio zibethinus OX=66656 GN=LOC111311539 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          MDMKK++CAV+V AA MSA MAS + PA APG +S AA++ LP +G+ +GASL SFFAYY
Sbjct: 1  MDMKKISCAVIVVAASMSAVMASTDAPAAAPGPASSAASSPLPVLGSLVGASLVSFFAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of Bhi11G002226 vs. ExPASy TrEMBL
Match: A0A1R3GYJ0 (Arabinogalactan peptide 23-like protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22445 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1  MDMKKVTCAVLVSAAVMSATMASGEGPAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 60
          MDMKK++CAV+V+AA MSA +A+G+ PA APG +SD AA+ALP +G+ +GASL SF AYY
Sbjct: 1  MDMKKISCAVIVAAASMSAALAAGDAPAAAPGPASD-AASALPVIGSVVGASLVSFLAYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

The following BLAST results are available for this feature:

BLAST of Bhi11G002226 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	2.1e-09	60.66	arabinogalactan protein 23	[more]
AT2G41905.1	2.3e-08	54.10	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

BLAST of Bhi11G002226 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	3.0e-08	60.66	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of Bhi11G002226 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906349.1	1.6e-19	100.00	arabinogalactan protein 23 [Benincasa hispida]	[more]
KAA0043704.1	7.8e-14	85.25	Arabinogalactan peptide 23 [Cucumis melo var. makuwa] >TYK25430.1 Arabinogalacta...	[more]
KAG7027762.1	3.1e-10	73.77	hypothetical protein SDJN02_08939, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6596222.1	1.3e-08	68.85	putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cu...	[more]
XP_022746067.1	1.7e-08	63.93	arabinogalactan peptide 23-like [Durio zibethinus]	[more]

BLAST of Bhi11G002226 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DQ83	3.8e-14	85.25	Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6P5Z0H7	8.1e-09	63.93	arabinogalactan peptide 23-like OS=Durio zibethinus OX=66656 GN=LOC111296195 PE=...	[more]
A0A059DIY4	1.1e-08	67.21	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02...	[more]
A0A6P6APJ2	1.4e-08	63.93	arabinogalactan peptide 23-like OS=Durio zibethinus OX=66656 GN=LOC111311539 PE=...	[more]
A0A1R3GYJ0	1.8e-08	63.93	Arabinogalactan peptide 23-like protein OS=Corchorus capsularis OX=210143 GN=CCA...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672:SF2	ARABINOGALACTAN PROTEIN 23	coord: 1..61
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M002226	Bhi11M002226	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane