Bhi11G002201 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G002201
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	squamosa promoter-binding-like protein 9 isoform X1
Location	chr11: 71103075 .. 71103429 (+)
RNA-Seq Expression	Bhi11G002201
Synteny	Bhi11G002201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCACATCCTTGGCAAAGCAACTCTCAGAACAATCCATCTGAACTTCTCTTGCCAGTTTCTGCAAGTGGAACCAGTTTTTCTTGTCCTGGGAATCCTTCTGGAGAATGCATCAATGGAGTTACTGACTCATCCTGTGCTCTCTCTCTTCTGTCTAATCAAACATGGGGCTCCAGAAACCAAACAACGGCGTCGAGGTGAATGCCTTGTTAAATGCTGAAGGTGCACTTGTGGCTCAAACAACAGCTCATGCTACTACCAATCATTTTCCGACCATGTCGTGGGGTTTCAAGGGGAATGAAGCTCCTGCTAGCAGCTCTCTGGACTTGACATCTGATCTGGGTCTCAATCAA

mRNA sequence

ATGTCCCACATCCTTGGCAAAGCAACTCTCAGAACAATCCATCTGAACTTCTCTTGCCAGTTTCTGCAAGTGGAACCAGTTTTTCTTGTCCTGGGAATCCTTCTGGAGAATGCATCAATGGAGTTACTGACTCATCCTAAACCAAACAACGGCGTCGAGGTGAATGCCTTGTTAAATGCTGAAGGTGCACTTGTGGCTCAAACAACAGCTCATGCTACTACCAATCATTTTCCGACCATGTCGTGGGGTTTCAAGGGGAATGAAGCTCCTGCTAGCAGCTCTCTGGACTTGACATCTGATCTGGGTCTCAATCAA

Coding sequence (CDS)

ATGTCCCACATCCTTGGCAAAGCAACTCTCAGAACAATCCATCTGAACTTCTCTTGCCAGTTTCTGCAAGTGGAACCAGTTTTTCTTGTCCTGGGAATCCTTCTGGAGAATGCATCAATGGAGTTACTGACTCATCCTAAACCAAACAACGGCGTCGAGGTGAATGCCTTGTTAAATGCTGAAGGTGCACTTGTGGCTCAAACAACAGCTCATGCTACTACCAATCATTTTCCGACCATGTCGTGGGGTTTCAAGGGGAATGAAGCTCCTGCTAGCAGCTCTCTGGACTTGACATCTGATCTGGGTCTCAATCAA

Protein sequence

MSHILGKATLRTIHLNFSCQFLQVEPVFLVLGILLENASMELLTHPKPNNGVEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLNQ

Homology

[Close]

BLAST of Bhi11G002201 vs. NCBI nr
Match: XP_038905618.1 (squamosa promoter-binding-like protein 17 [Benincasa hispida])

HSP 1 Score: 104.0 bits (258), Expect = 8.1e-19
Identity = 51/54 (94.44%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLNQ 106
           VEVNALLNAEGALVAQTTAH   NHFPTMSWGFKGNEAPASSSLDLTSDLGLNQ
Sbjct: 285 VEVNALLNAEGALVAQTTAHGAANHFPTMSWGFKGNEAPASSSLDLTSDLGLNQ 338

[Close]

BLAST of Bhi11G002201 vs. NCBI nr
Match: KAA0043720.1 (squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa] >TYK25413.1 squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-17
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           VEVNALLNAEG LVAQTT HA TNHFPTMSWGFKGNEAP SS LDLTSDLGLN
Sbjct: 185 VEVNALLNAEGTLVAQTTTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLN 237

[Close]

BLAST of Bhi11G002201 vs. NCBI nr
Match: XP_016899769.1 (PREDICTED: squamosa promoter-binding-like protein 9 isoform X2 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-17
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           VEVNALLNAEG LVAQTT HA TNHFPTMSWGFKGNEAP SS LDLTSDLGLN
Sbjct: 253 VEVNALLNAEGTLVAQTTTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLN 305

[Close]

BLAST of Bhi11G002201 vs. NCBI nr
Match: XP_008443072.1 (PREDICTED: squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-17
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           VEVNALLNAEG LVAQTT HA TNHFPTMSWGFKGNEAP SS LDLTSDLGLN
Sbjct: 286 VEVNALLNAEGTLVAQTTTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLN 338

[Close]

BLAST of Bhi11G002201 vs. NCBI nr
Match: XP_004136576.1 (squamosa promoter-binding-like protein 9 [Cucumis sativus] >KGN59315.1 hypothetical protein Csa_001653 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 8.4e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           +EVNALLNAEG LVAQTTA A TNHFPTMSWGFKGNEAP SS  DLTSDLGLN
Sbjct: 286 IEVNALLNAEGTLVAQTTADAATNHFPTMSWGFKGNEAPTSSFRDLTSDLGLN 338

[Close]

BLAST of Bhi11G002201 vs. ExPASy TrEMBL
Match: A0A5D3DP42 (Squamosa promoter-binding-like protein 9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005550 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           VEVNALLNAEG LVAQTT HA TNHFPTMSWGFKGNEAP SS LDLTSDLGLN
Sbjct: 185 VEVNALLNAEGTLVAQTTTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLN 237

[Close]

BLAST of Bhi11G002201 vs. ExPASy TrEMBL
Match: A0A1S3B7Z5 (squamosa promoter-binding-like protein 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486778 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           VEVNALLNAEG LVAQTT HA TNHFPTMSWGFKGNEAP SS LDLTSDLGLN
Sbjct: 286 VEVNALLNAEGTLVAQTTTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLN 338

[Close]

BLAST of Bhi11G002201 vs. ExPASy TrEMBL
Match: A0A1S4DUW0 (squamosa promoter-binding-like protein 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486778 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 48/53 (90.57%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           VEVNALLNAEG LVAQTT HA TNHFPTMSWGFKGNEAP SS LDLTSDLGLN
Sbjct: 253 VEVNALLNAEGTLVAQTTTHAATNHFPTMSWGFKGNEAPPSSFLDLTSDLGLN 305

[Close]

BLAST of Bhi11G002201 vs. ExPASy TrEMBL
Match: A0A0A0LBC1 (SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G809420 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.1e-16
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 52  VEVNALLNAEGALVAQTTAHATTNHFPTMSWGFKGNEAPASSSLDLTSDLGLN 105
           +EVNALLNAEG LVAQTTA A TNHFPTMSWGFKGNEAP SS  DLTSDLGLN
Sbjct: 286 IEVNALLNAEGTLVAQTTADAATNHFPTMSWGFKGNEAPTSSFRDLTSDLGLN 338

[Close]

BLAST of Bhi11G002201 vs. ExPASy TrEMBL
Match: A0A6J1DZT7 (squamosa promoter-binding-like protein 17 OS=Momordica charantia OX=3673 GN=LOC111025846 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.4e-13
Identity = 45/62 (72.58%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 47  KPNNGVEVNALLNAEGALVAQTTA-HATTNHFPTMSWGFKGNEAPASSSLD--LTSDLGL 106
           + ++ +EVNALLN EGALVAQTTA HA  NHFPT  WGFKGNEA ASSS    LTSDLGL
Sbjct: 147 RTSSALEVNALLNVEGALVAQTTATHAAANHFPTAPWGFKGNEAAASSSSQDHLTSDLGL 206

The following BLAST results are available for this feature:

BLAST of Bhi11G002201 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G002201 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G002201 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905618.1	8.1e-19	94.44	squamosa promoter-binding-like protein 17 [Benincasa hispida]	[more]
KAA0043720.1	4.4e-17	90.57	squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo var. makuwa] >...	[more]
XP_016899769.1	4.4e-17	90.57	PREDICTED: squamosa promoter-binding-like protein 9 isoform X2 [Cucumis melo]	[more]
XP_008443072.1	4.4e-17	90.57	PREDICTED: squamosa promoter-binding-like protein 9 isoform X1 [Cucumis melo]	[more]
XP_004136576.1	8.4e-16	86.79	squamosa promoter-binding-like protein 9 [Cucumis sativus] >KGN59315.1 hypotheti...	[more]

BLAST of Bhi11G002201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DP42	2.2e-17	90.57	Squamosa promoter-binding-like protein 9 isoform X1 OS=Cucumis melo var. makuwa ...	[more]
A0A1S3B7Z5	2.2e-17	90.57	squamosa promoter-binding-like protein 9 isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A1S4DUW0	2.2e-17	90.57	squamosa promoter-binding-like protein 9 isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A0A0LBC1	4.1e-16	86.79	SBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G809420 PE...	[more]
A0A6J1DZT7	9.4e-13	72.58	squamosa promoter-binding-like protein 17 OS=Momordica charantia OX=3673 GN=LOC1...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M002201	Bhi11M002201	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding