Bhi11G001658 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G001658
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr11: 56078088 .. 56078682 (+)
RNA-Seq Expression	Bhi11G001658
Synteny	Bhi11G001658

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTTGGGACAATAGAAGACTCTATGCATTTGTCTAACGAGGTCTTTTTGGGTTATCCTTATTCCCAAGCTAATCCTCTATTAGTTCCGTGTTCAATGTCGAGTGGGGAGCTTTTAGGTGGTTGGTCGTGCGACTGGGCAGTTTTAGGGTCAGTGGGCATTAAAAGGGTGGAAGTGGAGATCCCTAGTGAGGAGTTGAGTTCTAAAAGGAAAAGAACGGGAGGAAGGAAAGTGGTCGAGGAAGGGAGTAATAGGATGGAGCGTGAGCTGAGGAAACTTGAAAGTTCAGTGAGTTACAAAAGGAGGAAGGATTTTATGGAAGTAGGTAGTATTTTTTCTCAATGTTGAAAATTGTTTCTTGGAATGTTAGAGGGTGAAGGGAAGGAAGAAGGAGAGATTAATAAAGGAAGTTCTTGGGCAAGAAAACCCGGATATTGTGGTTTTATCGGAGACTAAGCATTGTGATTTTAAGCTTCAACTTATTAGTAGTATCTGGAAGTCTAGAAAGGTGGAATGGAAGAATATTGACTCCTTAGGGGGGAGGGTCGGAGGCATATTGGTTATGTGGACAGTAGAACTCTGTCAGCCTTAG

mRNA sequence

ATGAGTGTTGGGACAATAGAAGACTCTATGCATTTGTCTAACGAGGTCTTTTTGGGTTATCCTTATTCCCAAGCTAATCCTCTATTAGTTCCGTGTTCAATGTCGAGTGGGGAGCTTTTAGGTGGTTGGTCGTGCGACTGGGCAGTTTTAGGGTCAGTGGGCATTAAAAGGGTGGAAGTGGAGATCCCTAGTGAGGAGTTGAGTTCTAAAAGGAAAAGAACGGGAGGAAGGAAAGTGGTCGAGGAAGGGAGTAATAGGATGGAGCGTGAGCTGAGGAAACTTGAAAGTTCAGTGAGTTACAAAAGGAGGAAGGATTTTATGGAAAGGGTGAAGGGAAGGAAGAAGGAGAGATTAATAAAGGAAGTTCTTGGGCAAGAAAACCCGGATATTGTGGTTTTATCGGAGACTAAGCATTGTGATTTTAAGCTTCAACTTATTAGTAGTATCTGGAAGTCTAGAAAGGTGGAATGGAAGAATATTGACTCCTTAGGGGGGAGGGTCGGAGGCATATTGGTTATGTGGACAGTAGAACTCTGTCAGCCTTAG

Coding sequence (CDS)

ATGAGTGTTGGGACAATAGAAGACTCTATGCATTTGTCTAACGAGGTCTTTTTGGGTTATCCTTATTCCCAAGCTAATCCTCTATTAGTTCCGTGTTCAATGTCGAGTGGGGAGCTTTTAGGTGGTTGGTCGTGCGACTGGGCAGTTTTAGGGTCAGTGGGCATTAAAAGGGTGGAAGTGGAGATCCCTAGTGAGGAGTTGAGTTCTAAAAGGAAAAGAACGGGAGGAAGGAAAGTGGTCGAGGAAGGGAGTAATAGGATGGAGCGTGAGCTGAGGAAACTTGAAAGTTCAGTGAGTTACAAAAGGAGGAAGGATTTTATGGAAAGGGTGAAGGGAAGGAAGAAGGAGAGATTAATAAAGGAAGTTCTTGGGCAAGAAAACCCGGATATTGTGGTTTTATCGGAGACTAAGCATTGTGATTTTAAGCTTCAACTTATTAGTAGTATCTGGAAGTCTAGAAAGGTGGAATGGAAGAATATTGACTCCTTAGGGGGGAGGGTCGGAGGCATATTGGTTATGTGGACAGTAGAACTCTGTCAGCCTTAG

Protein sequence

MSVGTIEDSMHLSNEVFLGYPYSQANPLLVPCSMSSGELLGGWSCDWAVLGSVGIKRVEVEIPSEELSSKRKRTGGRKVVEEGSNRMERELRKLESSVSYKRRKDFMERVKGRKKERLIKEVLGQENPDIVVLSETKHCDFKLQLISSIWKSRKVEWKNIDSLGGRVGGILVMWTVELCQP

Homology

[Close]

BLAST of Bhi11G001658 vs. NCBI nr
Match: RVW43928.1 (hypothetical protein CK203_072334 [Vitis vinifera])

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-07
Identity = 49/123 (39.84%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 59  EVEIPSEELSSKRKRTGG------RKVVEEGSNRMERELRKLESSVSYKRRKDFME-RVK 118
           EVEI  E LS  + RTG       RK  +  S R EREL++LE SVSYK  +D  +    
Sbjct: 313 EVEI-LELLSKLKLRTGSNSLRKRRKKKKSCSTRFERELKRLECSVSYKGTQDIQKIWAN 372

Query: 119 GRKKERLIKEVLGQENPDIVVLSETKHCDFKLQLISSIWKSRKVEWKNIDSLGGRVGGIL 175
              K +LIK V+  +  D+V L ETK  D   QL++S+   R + W ++D+  G  GG+L
Sbjct: 373 DCDKRKLIKGVVRNQKADLVCLLETKVKDVSTQLVNSVGVGRFLNWDSVDA-RGTAGGLL 432

[Close]

BLAST of Bhi11G001658 vs. NCBI nr
Match: RVW92935.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 65.9 bits (159), Expect = 4.2e-07
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 48  AVLGSVGIKRVEVEIPSEELSSKRKRTGG------RKVVEEGSNRMERELRKLESSVSYK 107
           +VLG + ++  EVEI +  L   + RTG       RK  +  + R EREL++LE SVSY 
Sbjct: 670 SVLG-MPVEGHEVEILA-LLKKLKLRTGNNSLCKRRKKKKSCTTRFERELKRLECSVSYG 729

Query: 108 RRKDFMER--VKGRKKERLIKEVLGQENPDIVVLSETKHCDFKLQLISSIWKSRKVEWKN 167
                 +R  +   +K +LIK V+  + PD+V L ETK  D  LQL+ S+   R + W +
Sbjct: 730 ETSGITKRSGINDCEKRKLIKGVVRNQKPDLVCLLETKVKDVSLQLVKSVGVGRFLNWAS 789

Query: 168 IDSLGGRVGGILVMW 175
           +D+ G   GG+L+ W
Sbjct: 790 VDARGA-AGGLLLFW 801

[Close]

BLAST of Bhi11G001658 vs. NCBI nr
Match: RVW67638.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-07
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 0


Query: 59  EVEIPSEELSSKRKRTGG------RKVVEEGSNRMERELRKLESSVSYKRRKDFMER--V 118
           EVEI  E LS  + RTG       RK  +  S R EREL++LE SVSYK      +R  +
Sbjct: 7   EVEI-LELLSKLKLRTGSNSLGKRRKKKKSCSTRFERELKRLECSVSYKGTSGISKRSGL 66

Query: 119 KGRKKERLIKEVLGQENPDIVVLSETKHCDFKLQLISSIWKSRKVEWKNIDSLGGRVGGI 175
               K +LIK V+  +  D+V L ETK  D   QL+ S+   R + W ++D+  G  GG+
Sbjct: 67  NDCDKRKLIKGVVRNQKADLVCLLETKVKDISTQLVKSVGVGRFLNWASVDA-RGMAGGL 126

[Close]

BLAST of Bhi11G001658 vs. NCBI nr
Match: RVW52321.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 5.5e-07
Identity = 49/124 (39.52%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 59  EVEIPSEELSSKRKRTGG------RKVVEEGSNRMERELRKLESSVSYKRRKDFMER--V 118
           EVEI  E LS  + RTG       RK  +  S R EREL++LE SVSYK      +R  +
Sbjct: 485 EVEI-LELLSKLKLRTGSNSLRKRRKKKKSCSTRFERELKRLECSVSYKGTSGISKRSGL 544

Query: 119 KGRKKERLIKEVLGQENPDIVVLSETKHCDFKLQLISSIWKSRKVEWKNIDSLGGRVGGI 175
               K +LIK V+  +  D+V L ETK  D   QL++S+   R + W ++D+  G  GG+
Sbjct: 545 NDCDKRKLIKGVVRNQKADLVCLLETKVKDVSTQLVNSVGVGRFLNWASVDA-RGTAGGL 604

[Close]

BLAST of Bhi11G001658 vs. NCBI nr
Match: RVW53829.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 7.2e-07
Identity = 50/135 (37.04%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 48  AVLGSVGIKRVEVEIPSEELSSKRKRTGG------RKVVEEGSNRMERELRKLESSVSYK 107
           +VLG + ++  EVEI +  L   + RTG       RK  +  + R EREL++LE SVSY 
Sbjct: 649 SVLG-MPVEGHEVEILA-LLKKLKLRTGNNSLCKRRKKKKSCTTRFERELKRLECSVSYG 708

Query: 108 RRKDFMER--VKGRKKERLIKEVLGQENPDIVVLSETKHCDFKLQLISSIWKSRKVEWKN 167
                 +R  +    K +LIK V+  + PD+V L ETK  D  LQL+ S+   R + W +
Sbjct: 709 ETSGITKRSGINDCAKRKLIKGVVRNQKPDLVCLLETKVKDVSLQLVKSVGVGRFLNWAS 768

Query: 168 IDSLGGRVGGILVMW 175
           +D+ G   GG+L+ W
Sbjct: 769 VDARGA-AGGLLLFW 780

[Close]

BLAST of Bhi11G001658 vs. ExPASy TrEMBL
Match: A0A0A0LY03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G673520 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-13
Identity = 61/159 (38.36%), Postives = 84/159 (52.83%), Query Frame = 0


Query: 33  SMSSGELLGGWSCD--WAVLGSVGIKRVE----------VEIPSEELSSKRKRTGGRKVV 92
           S + G LLG    D  W +L S  IK VE          +++  EE   K KR       
Sbjct: 401 SKTLGALLGEVKNDERWDILVSTDIKGVEAKEGKNGKDDIKLSVEEGGVKLKR------- 460

Query: 93  EEGSNRMERELRKLESSVSYKRRKDFMERVKGRKKERLIKEVLGQENPDIVVLSETKHCD 152
           +EGS+ + REL+KL+S               G+ K RL+KEVL QENPD+V+  ETK  +
Sbjct: 461 KEGSDNLSRELKKLDS--------------LGQTKRRLVKEVLRQENPDVVISMETKRSE 520

Query: 153 FKLQLISSIWKSRKVEWKNIDSLGGRVGGILVMWTVELC 180
           F    I+SIWK R+VEW+ +++  G   GIL +W + LC
Sbjct: 521 FCSWRIASIWKRRRVEWEVLEA-KGLSSGILALWNLRLC 537

[Close]

BLAST of Bhi11G001658 vs. ExPASy TrEMBL
Match: A0A0A0LEI5 (CorC_HlyC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G769670 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 29/58 (50.00%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 107 MERVKGRKKERLIKEVLGQENPDIVVLSETKHCDFKLQLISSIWKSRKVEWKNIDSLG 165
           ++R+ G  K RLIKE+  QEN DIV+L ET   DF  Q I  +WKSR+V+W++++S+G
Sbjct: 35  VKRLNGWDKRRLIKEIFRQENLDIVILMETNGGDFDFQFIGGLWKSRRVDWESLNSIG 92

[Close]

BLAST of Bhi11G001658 vs. ExPASy TrEMBL
Match: A0A438I889 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_720 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-07
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 48  AVLGSVGIKRVEVEIPSEELSSKRKRTGG------RKVVEEGSNRMERELRKLESSVSYK 107
           +VLG + ++  EVEI +  L   + RTG       RK  +  + R EREL++LE SVSY 
Sbjct: 670 SVLG-MPVEGHEVEILA-LLKKLKLRTGNNSLCKRRKKKKSCTTRFERELKRLECSVSYG 729

Query: 108 RRKDFMER--VKGRKKERLIKEVLGQENPDIVVLSETKHCDFKLQLISSIWKSRKVEWKN 167
                 +R  +   +K +LIK V+  + PD+V L ETK  D  LQL+ S+   R + W +
Sbjct: 730 ETSGITKRSGINDCEKRKLIKGVVRNQKPDLVCLLETKVKDVSLQLVKSVGVGRFLNWAS 789

Query: 168 IDSLGGRVGGILVMW 175
           +D+ G   GG+L+ W
Sbjct: 790 VDARGA-AGGLLLFW 801

[Close]

BLAST of Bhi11G001658 vs. ExPASy TrEMBL
Match: A0A2N9FZ73 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20450 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-07
Identity = 40/120 (33.33%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 55  IKRVEVEIPSEELSSKRKRTGGRKVVEEGSNRMERELRKLESSVSYKRRKDFMERVKGRK 114
           ++++E   P ++     +++G      + +NR +RELR L SSV+Y  R+   +R K  +
Sbjct: 440 LQKIEARRPQQKQKVPSQKSG-----TQSANRGQRELRGLHSSVNYDVRRGLNDRDKRLR 499

Query: 115 KERLIKEVLGQENPDIVVLSETKHCDFKLQLISSIWKSRKVEWKNIDSLGGRVGGILVMW 174
              LIK        D++ L ETK  +F  Q+I S+W ++ V+W ++ S  G  GGIL+MW
Sbjct: 500 MRNLIK----LWKADVICLQETKMAEFNRQVIQSLWGNQHVDWTSLGS-NGAAGGILLMW 549

[Close]

BLAST of Bhi11G001658 vs. ExPASy TrEMBL
Match: A0A438KFB2 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_712 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-07
Identity = 50/135 (37.04%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 48  AVLGSVGIKRVEVEIPSEELSSKRKRTGG------RKVVEEGSNRMERELRKLESSVSYK 107
           +VLG + ++  EVEI +  L   + RTG       RK  +  + R EREL++LE SVSY 
Sbjct: 651 SVLG-MPVEGHEVEILA-LLKKLKLRTGNNSLCKRRKKKKSCTTRFERELKRLECSVSYG 710

Query: 108 RRKDFMER--VKGRKKERLIKEVLGQENPDIVVLSETKHCDFKLQLISSIWKSRKVEWKN 167
                 +R  +    K +LIK V+  + PD+V L ETK  D  LQL+ S+   R + W +
Sbjct: 711 ETSGITKRSGINDCAKRKLIKGVVRNQKPDLVCLLETKVKDVSLQLVKSVGVGRFLNWAS 770

Query: 168 IDSLGGRVGGILVMW 175
           +D+ G   GG+L+ W
Sbjct: 771 VDARGA-AGGLLLFW 782

The following BLAST results are available for this feature:

BLAST of Bhi11G001658 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G001658 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G001658 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW43928.1	4.2e-07	39.84	hypothetical protein CK203_072334 [Vitis vinifera]	[more]
RVW92935.1	4.2e-07	37.04	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW67638.1	5.5e-07	39.52	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW52321.1	5.5e-07	39.52	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW53829.1	7.2e-07	37.04	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]

BLAST of Bhi11G001658 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY03	1.9e-13	38.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G673520 PE=4 SV=1	[more]
A0A0A0LEI5	1.6e-07	50.00	CorC_HlyC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G769670 P...	[more]
A0A438I889	2.0e-07	37.04	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_720 P...	[more]
A0A2N9FZ73	2.7e-07	33.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20450 PE=4 SV=1	[more]
A0A438KFB2	3.5e-07	37.04	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 77..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M001658	Bhi11M001658	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0097159	organic cyclic compound binding