Bhi11G000015 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G000015
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	chr11: 381917 .. 385716 (-)
RNA-Seq Expression	Bhi11G000015
Synteny	Bhi11G000015

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATTTTTGTAAATAAAAAAAAAAAAAAAAAAGACACAAAAATGAACATATGAATTAAAGGAAAAATGGAATACAAAATATCCATCGCCTTATCCACATTCTTCCGCCCTACGAAATCGCAACAATGGCGACGCTCGAATCTGCAATTCCAATAATCTCTCAGTACATTTCTTCTTCTTCCTCGAAATTGCGCTTAAATAAACTTCCCTCTGCCATTAAGCTTCGAATTTCCTTCTCCTCCCCTCTCCGTCCCCTCAATCCCACAACCGCCATTTCCCCTCTCTCCCTCCATCTATCGCGAAATCACGGCGGCGGCGGCGGCAGCCGACTATGTTCTGCAGTGCAAGAGGTAAGTTTGGAGGAAGCTTCAGAGCAAAATGAGGATGTGAATCAGAAGAAAAAGTTATATATCTTCAATTTACCTTGGTCTTTCTCTGTCGTTGATATTAAGGAGCTCTTTGGACAATGCGGAACTGTCACTGATGTTGAGGTTCGTCTTATTCTTTTCTTTCTTTTTTGTTCCCTAATAATGTTTAGGGTCGAGGATAACTCAATTGACATAGAAATATGTTGGAATCACAAAGTCCATTCTTCGAATTGTATACTCAAAAAGATAAAAATCTAAAACTAATTGTATACACCCTCTTTCAGATTTTGTTCAAACAAAGTATTAAGTAAGAGACCCTTCATTCTGATTATCTTTAAACATCATATATGCTTTATTAAAGTAAATGCACATACGGTTTTCAAAAAGAATTTTTATCTAAAAGTCTAAATTAATTCATTTACGAAAGTTTAAGAGTTTAATTAATACAAATATAAATTTTACATGAGACTTTTCCCAACAGAACATAATGGAAGGTAAAAATTGATACATTAACAAAGGTTGAGAATTTAAATGGATACAACTCCTAAAATTTATGGATATAAATTGGTATTTTTTATGTTTATGTACCTGATGAATTTGTGTTGGAATGTGTTAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGTAGGTTTTCTTCAACCTATTTCTGTTCACTTTCTGTTTGCTTATTTGCCCCAATGAATTCTTATTCTTTTTTTTTACTGTTATTCTACCAATTATTTGATTGGTTTGGTTCTGAAATTGAAATGCACAATTTCAATATCACTTTGGTATGTATATAACCACTTTGAGAATCCTCAAGAGTTTTTCCTTTTTGGATATTTTTAAGTTTCGGGGTTGGGATTGAAGAAACTAGAGTTTGAACTCATTCCTTTTACTTTTTTTTTCTTACATGTTTGCATGCCACTCGACCAACTTAGAGTGGTTGAAAGTGCATCACAATTTGTTAAAATGTCCATTCATGAGCATAGGTCTCACTTATCACAAATCCACGTTCGGAAAAAGTTATGAAATTGCAAAATTTTAATAATAGGCGTGAATTTATATCTTTACAAAAATCGAATGTAACTTGAAATCGCACTTAGGATCTCATCAATTCGAGATGGATGCAAATTCGCGGTCGCAAATGGGCTTTAAGGAGAATTTAATATCAATTGGTGTTTTATGACCTAAGCAAATGATTAATTTTCATTATCATTAGAATCTGAGTCACTTGACATTAGTGGCAGTGCAACTAAATTTGGGTCATCCAAGAGAGAGAAGAAAAAACTAGACTCATATGGTTATTTCTTAAAAGCCCAAGGTATTATAACTACTTCCTACTATGACATACATTTCAGTCATTTTGCTTTATATTGGTTCTAAACATACGTAACATAACTACTGCCTGTTGACTATTGTGACAGACATATCTAGGTCTTGTTCATGGTAACTATAACATGCTAATATGTTCCATGAAAACATATATTTGTGCAGGAAATATCAGGAAGAGTTATAAAAGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCACCTCCAAAGCCTCCAGGTCCCCCTCCTGTAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCCAGCAATCTCAGAGAGTTCTTTTCTGAAAACTTTAATCCAGTTGCAGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAGATCTGCTGGATATGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCCTTGGAGGGAAAGGTAATTTATTTCCTGAGATCTGACAAGAATGTTACTAGAAATATAAATATATTAGTAATTAGTTAGGAGAGTTCGTTATAGAATTTGGCTATAAATAGAGATTAGGAGAATGAGTAAAGGAGGCAATATTTTAGAGTATGAATCACAGCATGAGAGTATTCTCAAGATTGAGAGCGTGGAAGTGTAACACCTGAATTTAGGAGGGACACATGAATTAACCAAGATCACATCTGAATGAGAAGGATCCTAGGGATTTGAAAGTATGGTTAAGAAAAACTTAAAAGAATTGAAAGTTACTATGTATACCAATAATGTGCATCTTCCTTTTTGGTGGTTCAATGATGTGAACTTCAAAGTTAAACACGCTTAGCTTAAAGCAATCCTATGTTAGGTAACCTCCTGAAAATTTTCTTAGGAAACATGTGAGTGAGAAAAAAGCATGTCGAAAGGATCTCTGTTGATTTGTGAGCATAGTCTTTACTCTTAGAAGCAGTTCAAGACAACCAAGGATGACGTTGTGAGATCGTGGGGGATACAAGGAAATATTGAGACTATTTGGTTTTAATTCAGATTATGAATCCTTCGCCTAGAATGTTCCAATAAGTGCTTTGAACACCTGATTAATCTTGTAATTCGTTATCGTTTATCTTTTAATATATTCAGGTTCTATAGAACTTGTTAATTGACGAAGTTTTGTGCAACTAAGAACTTGTTTGGAATGAATTTTCAAATGCTTAAAAGCGCCTTTTTTTAAGTACTTGAAAAGTTATTCTAAGCAGACCTTGAGTGTTAGATGCACGAATTATTCACGTTTGAATCAACACTCACGAAAAACGAAAACCTGAATTACTGCTTTTTTTAGGTATCATTTGTTGAAAACCTGAAAAATAACTCAGTACCATGATACATTTTAGCCTCTAATGCAAGTGGAATGTTCTATTTCATTCCTTCCTTGCATATTTGAAATGCTGTACTCTCTCCCTCCACAGGAATTGATGGGGAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAACGAATCAGAAACCCCAAAAGAAGACAATGTTGAAAGCCAACCTGAAGAATCATAGATCCACTCAGATTCAACATCAAATTCATCACTTGGTAGAAAACTCAGAACCAAGATTTTGTTTGAGATTCCAACTACCCTTATGAGATTTGCTGGCTGGTGTGATCTGTACATCTTACAGCTGTTTTTGTAGTATACTTGTAGTATCGTAACATTATCTGTCATCTAAAATTTCTGAATCAAGTCCTTATGGACTCTTTTGATCTCAAAAAAATTCTTCTCTTGGTGTAGCATAAAGTAGTTAACAAAATTTGTCTGATGATATTTTGTTGTTTTAAAGTTACATAGAAGGAACGTGTCATTATCACAATCAAATTCATTTTGTTTTACCTACCAAAACTTCAACCTAATGCCATTGAAATTGGCCAATCCCATTGCAATGGATAAAATAAATGCATAAACAAGCAAAATAAGTAAAGCCGTGATGGATGACGTGGACAGGGTATCGACTGATAAGTTAACTAGTCCAGTGAGCAAGTTTG

mRNA sequence

CTATTTTTGTAAATAAAAAAAAAAAAAAAAAAGACACAAAAATGAACATATGAATTAAAGGAAAAATGGAATACAAAATATCCATCGCCTTATCCACATTCTTCCGCCCTACGAAATCGCAACAATGGCGACGCTCGAATCTGCAATTCCAATAATCTCTCAGTACATTTCTTCTTCTTCCTCGAAATTGCGCTTAAATAAACTTCCCTCTGCCATTAAGCTTCGAATTTCCTTCTCCTCCCCTCTCCGTCCCCTCAATCCCACAACCGCCATTTCCCCTCTCTCCCTCCATCTATCGCGAAATCACGGCGGCGGCGGCGGCAGCCGACTATGTTCTGCAGTGCAAGAGGTAAGTTTGGAGGAAGCTTCAGAGCAAAATGAGGATGTGAATCAGAAGAAAAAGTTATATATCTTCAATTTACCTTGGTCTTTCTCTGTCGTTGATATTAAGGAGCTCTTTGGACAATGCGGAACTGTCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGAAATATCAGGAAGAGTTATAAAAGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCACCTCCAAAGCCTCCAGGTCCCCCTCCTGTAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCCAGCAATCTCAGAGAGTTCTTTTCTGAAAACTTTAATCCAGTTGCAGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAGATCTGCTGGATATGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCCTTGGAGGGAAAGGAATTGATGGGGAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAACGAATCAGAAACCCCAAAAGAAGACAATGTTGAAAGCCAACCTGAAGAATCATAGATCCACTCAGATTCAACATCAAATTCATCACTTGGTAGAAAACTCAGAACCAAGATTTTGTTTGAGATTCCAACTACCCTTATGAGATTTGCTGGCTGGTGTGATCTGTACATCTTACAGCTGTTTTTGTAGTATACTTGTAGTATCGTAACATTATCTGTCATCTAAAATTTCTGAATCAAGTCCTTATGGACTCTTTTGATCTCAAAAAAATTCTTCTCTTGGTGTAGCATAAAGTAGTTAACAAAATTTGTCTGATGATATTTTGTTGTTTTAAAGTTACATAGAAGGAACGTGTCATTATCACAATCAAATTCATTTTGTTTTACCTACCAAAACTTCAACCTAATGCCATTGAAATTGGCCAATCCCATTGCAATGGATAAAATAAATGCATAAACAAGCAAAATAAGTAAAGCCGTGATGGATGACGTGGACAGGGTATCGACTGATAAGTTAACTAGTCCAGTGAGCAAGTTTG

Coding sequence (CDS)

ATGGCGACGCTCGAATCTGCAATTCCAATAATCTCTCAGTACATTTCTTCTTCTTCCTCGAAATTGCGCTTAAATAAACTTCCCTCTGCCATTAAGCTTCGAATTTCCTTCTCCTCCCCTCTCCGTCCCCTCAATCCCACAACCGCCATTTCCCCTCTCTCCCTCCATCTATCGCGAAATCACGGCGGCGGCGGCGGCAGCCGACTATGTTCTGCAGTGCAAGAGGTAAGTTTGGAGGAAGCTTCAGAGCAAAATGAGGATGTGAATCAGAAGAAAAAGTTATATATCTTCAATTTACCTTGGTCTTTCTCTGTCGTTGATATTAAGGAGCTCTTTGGACAATGCGGAACTGTCACTGATGTTGAGATTATAAAGCAGAAAAATGGAAGGAGCAGGGGATTTGCCTTTGTGACTATGGCTTCACCAGATGAAGCTCAAGCTGCTATTCAGAAATTTGACTCTCAAGAAATATCAGGAAGAGTTATAAAAGTAGAGTTTGCAAAGAGATTGAAGAAACCTCCACCTCCAAAGCCTCCAGGTCCCCCTCCTGTAGAGACAGTGAATAAACTTTATGTATCAAATCTTGCATGGAAAGTGAGATCCAGCAATCTCAGAGAGTTCTTTTCTGAAAACTTTAATCCAGTTGCAGCCAGGGTTGTCTTCGATAGCCCCTCTGGAAGATCTGCTGGATATGGTTTTGTTTCTTTTGCTACTCGAGAGGAAGCAGAAACTGCACTTTCTTCCTTGGAGGGAAAGGAATTGATGGGGAGACCCCTTCGCCTGAAATTCAGTGAAAGAAATGTCAACGAATCAGAAACCCCAAAAGAAGACAATGTTGAAAGCCAACCTGAAGAATCATAG

Protein sequence

MATLESAIPIISQYISSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSRNHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES

Homology

[Close]

BLAST of Bhi11G000015 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 265.4 bits (677), Expect = 5.3e-71
Identity = 160/293 (54.61%), Postives = 205/293 (69.97%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSKLRL-NKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSR 60
           MA LE+++ I S   SSSSSK  L +K  S++KL     + L    P+      SL    
Sbjct: 1   MAVLEASLSIFSFSSSSSSSKPYLFSKRSSSLKL-----TALSLRIPSNLSPVFSLRSGS 60

Query: 61  NHGGGGGSRLC-------SAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELF 120
           ++     S LC       SA +E S EE +E+ ++ N K+KL++FNLPWS SV DI ELF
Sbjct: 61  DNSRRLVSVLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELF 120

Query: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180
           GQCGTV +VEII+QK+G++RGFAFVTMAS +EAQAAI KFD+ ++SGR+I V FA+R KK
Sbjct: 121 GQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKK 180

Query: 181 PPPPKP---PGPPPVETVNKLYVSNLAWKVRSSNLREFF-SENFNPVAARVVFDSPSGRS 240
           P P  P   P P P +T +KLYVSNLAWK RS++LRE F + +FNPV+ARVVF  P GRS
Sbjct: 181 PTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRS 240

Query: 241 AGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVES 282
           +GYGFVSFATREEAE A++ L GKE+MGRP+ LKFS R+ +ESE    D+VE+
Sbjct: 241 SGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSASESE--DGDSVEA 286

[Close]

BLAST of Bhi11G000015 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.2e-35
Identity = 89/231 (38.53%), Postives = 135/231 (58.44%), Query Frame = 0


Query: 67  SRLCSAVQEVSLEEASEQN------EDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTD 126
           S   +  QE  LE +S  +      E+   K +L   N+PW+ +  DI+ LF + G+V D
Sbjct: 63  SYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVID 122

Query: 127 VEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPG 186
           +E+   K  R+RG  F+ MASP+EA  A++  +S E  GR +KV++AK  KK        
Sbjct: 123 IEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRET 182

Query: 187 PPPVETVNKLYVSNLAWKVRSSNLREFF-SENFNPVAARVVFDSPSGRSAGYGFVSFATR 246
           P PV T N L+V+NLA++ R+ +L+EFF ++  N V+  V+F     RS+GYGFVSF T+
Sbjct: 183 PSPVPTFN-LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTK 242

Query: 247 EEAETALSSLEGKELMGRPLRL----KFSERNVNESETPKEDNVESQPEES 287
           ++AE AL   +GK+ +GRP+RL    +F +    E   P E+  E +P +S
Sbjct: 243 KQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQS 292

[Close]

BLAST of Bhi11G000015 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 145.2 bits (365), Expect = 8.1e-35
Identity = 82/201 (40.80%), Postives = 124/201 (61.69%), Query Frame = 0


Query: 91  KKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQ 150
           K +L   N+PW+ +  DI+ LF + G+V D+E+   K  R+RG  F+ MASP+EA  A++
Sbjct: 33  KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 92

Query: 151 KFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPVETVNKLYVSNLAWKVRSSNLREFF-S 210
             +S E  GR +KV++AK  KK        P PV T N L+V+NLA++ R+ +L+EFF +
Sbjct: 93  SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDA 152

Query: 211 ENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRL----KFSE 270
           +  N V+  V+F     RS+GYGFVSF T+++AE AL   +GK+ +GRP+RL    +F +
Sbjct: 153 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 212

Query: 271 RNVNESETPKEDNVESQPEES 287
               E   P E+  E +P +S
Sbjct: 213 LQAKEGLQPPEEEAEEEPSQS 232

[Close]

BLAST of Bhi11G000015 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 130.6 bits (327), Expect = 2.1e-30
Identity = 76/224 (33.93%), Postives = 125/224 (55.80%), Query Frame = 0


Query: 75  EVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQK-NGRSRG 134
           E  +EE  +  +   ++ +LY+ NLP++ +  ++ ++FG+ GTV DV+I+  K   RSRG
Sbjct: 99  EEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRG 158

Query: 135 FAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPP---------- 194
           F FVTM S +EA+ A+Q F+S +I GR +KV F        P  P G             
Sbjct: 159 FGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNF--------PEVPRGGENEVMRTKIRDN 218

Query: 195 ----VETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATR 254
               V++ +K+Y  NL W + S  L++ F +    + A+V+++  +GRS G+GF+SF + 
Sbjct: 219 NRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESA 278

Query: 255 EEAETALSSLEGKELMGRPLRLKF-SERNVNESETPKEDNVESQ 283
           E  ++AL+++ G E+ GR LRL   SER       P  +  E++
Sbjct: 279 ENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETE 314

[Close]

BLAST of Bhi11G000015 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 126.7 bits (317), Expect = 3.0e-29
Identity = 74/174 (42.53%), Postives = 104/174 (59.77%), Query Frame = 0


Query: 93  KLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKN-GRSRGFAFVTMASPDEAQAAIQK 152
           KLY  NLP++     + ++         VE++  ++ G+SRGFAFVTM++ ++    I  
Sbjct: 86  KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145

Query: 153 FDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPVETVNKLYVSNLAWKVRSSNLREFFSEN 212
            D  E  GR +KV FA    KP P K P  P  ET +KL+V NL+W V S +L   F E 
Sbjct: 146 LDGTEYLGRALKVNFA---DKPKPNKEPLYP--ETEHKLFVGNLSWTVTSESLAGAFREC 205

Query: 213 FNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSE 266
            + V ARVVFD  +GRS GYGFV ++++ E ETAL SL+G EL GR +R+  ++
Sbjct: 206 GDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254

[Close]

BLAST of Bhi11G000015 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.9e-30
Identity = 94/297 (31.65%), Postives = 159/297 (53.54%), Query Frame = 0


Query: 6   SAIPIISQYISSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSRNHGGGG 65
           S + + +Q    S   L L+   +    +I+ S+ L+   P +++   S+ LS       
Sbjct: 18  SLLYLFTQKPKFSVDHLSLSTYNTHFNFKIN-STKLKAHFPISSLYRSSIFLSTCASVSD 77

Query: 66  GSRLCSAVQEVSLEEASEQNEDVNQKK-----------KLYIFNLPWSFSVVDIKELFGQ 125
           G  +     E  +  ++E+ E++ +K+           +LY+ NLP+S +   + E+F +
Sbjct: 78  GVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAE 137

Query: 126 CGTVTDVEIIKQK-NGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEF------A 185
            GTV +VEI+  +   RSRGFAFVTM S +EA+ AI+ FD  ++ GR +KV F       
Sbjct: 138 AGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGG 197

Query: 186 KRLKKPPPPKPPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGR 245
           +R       +      V++ +KLYV+NL+W + S  LR+ F++    ++A+V++D  SGR
Sbjct: 198 EREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGR 257

Query: 246 SAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPE 285
           S G+GF++F++ E   +AL ++   EL GRPLRL  + +    S  P    VE+ PE
Sbjct: 258 SRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSSPPV---VETSPE 310

[Close]

BLAST of Bhi11G000015 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.9e-29
Identity = 76/224 (33.93%), Postives = 125/224 (55.80%), Query Frame = 0


Query: 75  EVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQK-NGRSRG 134
           E  +EE  +  +   ++ +LY+ NLP++ +  ++ ++FG+ GTV DV+I+  K   RSRG
Sbjct: 99  EEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRG 158

Query: 135 FAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPP---------- 194
           F FVTM S +EA+ A+Q F+S +I GR +KV F        P  P G             
Sbjct: 159 FGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNF--------PEVPRGGENEVMRTKIRDN 218

Query: 195 ----VETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATR 254
               V++ +K+Y  NL W + S  L++ F +    + A+V+++  +GRS G+GF+SF + 
Sbjct: 219 NRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESA 278

Query: 255 EEAETALSSLEGKELMGRPLRLKF-SERNVNESETPKEDNVESQ 283
           E  ++AL+++ G E+ GR LRL   SER       P  +  E++
Sbjct: 279 ENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETE 314

[Close]

BLAST of Bhi11G000015 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.8e-29
Identity = 96/275 (34.91%), Postives = 147/275 (53.45%), Query Frame = 0


Query: 16  SSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSRNHGGGGGSRLCSA--- 75
           SS+SS   L+  P  + L        +P + TT++S  SL  S  +     S  C +   
Sbjct: 3   SSASSLHFLSLTPQTLPLP-------KPTSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRF 62

Query: 76  VQEVSL------EEASEQNEDVNQKK------KLYIFNLPWSFSVVDIKELFGQCGTVTD 135
           V++V+L      E+  + ++ V +++      K+++ NLP+S     + ELF + G V  
Sbjct: 63  VRKVTLSDFDQIEDVEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEM 122

Query: 136 VEIIKQK-NGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPK-- 195
           VE+I  K  GRSRGF FVTM+S +E +AA Q+F+  E+ GR ++V        PPP K  
Sbjct: 123 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRE 182

Query: 196 -------PPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAG 255
                    G    ++ N++YV NLAW V    L   FSE    V A+VV+D  SGRS G
Sbjct: 183 NSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRG 242

Query: 256 YGFVSFATREEAETALSSLEGKELMGRPLRLKFSE 266
           +GFV++++ EE   A+ SL+G +L GR +R+  +E
Sbjct: 243 FGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265

[Close]

BLAST of Bhi11G000015 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.6e-27
Identity = 67/193 (34.72%), Postives = 118/193 (61.14%), Query Frame = 0


Query: 75  EVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTDVEIIKQKN-GRSRG 134
           EV  +E  E+ ++  +  KL++ NLP+      +  LF Q G V   E+I  ++  +SRG
Sbjct: 119 EVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRG 178

Query: 135 FAFVTMASPDEAQAAIQKFDSQEISGRVIKV-EFAKRLKKPPPPKPPGPPPVETVNKLYV 194
           F FVTM++ +EA+ A++ ++  +++GR++ V + A+R ++P  P    P   E   ++YV
Sbjct: 179 FGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERP----PRTFEQSYRIYV 238

Query: 195 SNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATREEAETALSSLEGK 254
            N+ W +  + L + FSE+   V+ARVV+D  +GRS G+GFV+ A+  E   A+++L+G+
Sbjct: 239 GNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQ 298

Query: 255 ELMGRPLRLKFSE 266
            L GR +R+  +E
Sbjct: 299 SLDGRTIRVNVAE 307

[Close]

BLAST of Bhi11G000015 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.6e-27
Identity = 95/281 (33.81%), Postives = 144/281 (51.25%), Query Frame = 0


Query: 16  SSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAIS-----PLSLHLSRNHGGGGGS--- 75
           SS+SS   L+  P  + L        +P + TT++S     P SL+LS +      S   
Sbjct: 3   SSASSLHFLSLTPQTLLLP-------KPTSQTTSLSFFSLPPSSLNLSLSSPSSCFSSRF 62

Query: 76  -RLCSAVQEVSLEEASEQNEDVNQKK------KLYIFNLPWSFSVVDIKELFGQCGTVTD 135
            R  +      +E+  + +E V +++      K+++ NL +S     + ELF + G V  
Sbjct: 63  VRKVTLPDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEM 122

Query: 136 VEIIKQK-NGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPK-- 195
           VE+I  K  GRSRGF FVTM+S +E +AA Q+F+  E+ GR ++V        PPP K  
Sbjct: 123 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-----SGPPPEKRE 182

Query: 196 -------------PPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSP 255
                          G    ++ N++YV NLAW V    L   FSE    V A+VV+D  
Sbjct: 183 NSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRD 242

Query: 256 SGRSAGYGFVSFATREEAETALSSLEGKELMGRPLRLKFSE 266
           SGRS G+GFV++++ EE   A+ SL+G +L GR +R+  +E
Sbjct: 243 SGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271

[Close]

BLAST of Bhi11G000015 vs. NCBI nr
Match: XP_038904114.1 (33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 547.4 bits (1409), Expect = 7.5e-152
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSRN 60
           MATLESAIPIISQYISSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSRN
Sbjct: 1   MATLESAIPIISQYISSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSRN 60

Query: 61  HGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTD 120
           HGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTD
Sbjct: 61  HGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVTD 120

Query: 121 VEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPG 180
           VEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPG
Sbjct: 121 VEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPG 180

Query: 181 PPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATRE 240
           PPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATRE
Sbjct: 181 PPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATRE 240

Query: 241 EAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 287
           EAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES
Sbjct: 241 EAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 286

[Close]

BLAST of Bhi11G000015 vs. NCBI nr
Match: KAG6577717.1 (hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015754.1 hypothetical protein SDJN02_23392 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 486.9 bits (1252), Expect = 1.2e-133
Identity = 260/289 (89.97%), Postives = 270/289 (93.43%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHL--- 60
           MATLESAIPIISQYISSSSSKL  +KLPSAIKLRISFSSPL  LNPTTA+SPL L L   
Sbjct: 1   MATLESAIPIISQYISSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPLPLFLTNP 60

Query: 61  SRNHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGT 120
           SRN GGGG  R CSAVQEVSLEEASE+N+DVNQK+KLYIFNLPWSFSVVDIKE FGQCGT
Sbjct: 61  SRNRGGGG--RFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEHFGQCGT 120

Query: 121 VTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPK 180
           VTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPK
Sbjct: 121 VTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPK 180

Query: 181 PPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFA 240
           PPGPPP ETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYGFVSFA
Sbjct: 181 PPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSFA 240

Query: 241 TREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 287
           TREEAETALSSLEGKELMGRPLRLKFSER V +SETPKED VESQPEES
Sbjct: 241 TREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 287

[Close]

BLAST of Bhi11G000015 vs. NCBI nr
Match: XP_008448669.1 (PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo])

HSP 1 Score: 481.1 bits (1237), Expect = 6.6e-132
Identity = 256/287 (89.20%), Postives = 269/287 (93.73%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-SSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSR 60
           MATLESA+PIIS Y+ SSSSSKL  NKLPSAIKLRISFSSPL  LNP T ISP+S + SR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  NHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVT 120
           N GGGG  RLCSAVQEVSLEEASE+ +DVNQKKKLYIFNLPWS SVVDIKELFGQCGTV+
Sbjct: 61  NPGGGG--RLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVS 120

Query: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPP 180
           DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKPP
Sbjct: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPP 180

Query: 181 GPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATR 240
           GPPP ETVNKLYVSNLAWKVRSSNLR+FFSE+FNP+AARVVFDSPSGRSAGYGFVSFATR
Sbjct: 181 GPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATR 240

Query: 241 EEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 287
           EEA+TALSSLEGKELMGRPLRLKFSER+VNESETPKED VESQPEES
Sbjct: 241 EEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of Bhi11G000015 vs. NCBI nr
Match: XP_022923294.1 (33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 479.2 bits (1232), Expect = 2.5e-131
Identity = 258/290 (88.97%), Postives = 268/290 (92.41%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-SSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHL-- 60
           MATLESAIPIISQYI SSSSSKL +  LPSAIKLRISFSSPL   NPTTA+SPL L L  
Sbjct: 1   MATLESAIPIISQYISSSSSSKLSIRTLPSAIKLRISFSSPLLSFNPTTAVSPLPLFLTN 60

Query: 61  -SRNHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCG 120
            SRN GGGG  R CSAVQEVSLEEASE+N+DVNQK+KLYIFNLPWSFSVVDIKE FGQCG
Sbjct: 61  PSRNRGGGG--RFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQFGQCG 120

Query: 121 TVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPP 180
           TVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPP
Sbjct: 121 TVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPP 180

Query: 181 KPPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSF 240
           KPPGPPP ETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYGFVSF
Sbjct: 181 KPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSF 240

Query: 241 ATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 287
           ATREEAETALSSLEGKELMGRPLRLKFSER V +SETPKED VESQPEES
Sbjct: 241 ATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288

[Close]

BLAST of Bhi11G000015 vs. NCBI nr
Match: XP_023007582.1 (29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 476.9 bits (1226), Expect = 1.3e-130
Identity = 256/294 (87.07%), Postives = 268/294 (91.16%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-------SSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPL 60
           MATLESAIPIISQYI       SSSSSKL  +KLPSAIKLRISFSSPL  LNPTTA+SPL
Sbjct: 1   MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60

Query: 61  SLHLSRN-HGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELF 120
            L L+      GGG R CSAVQEVSLEEASE+N+DVNQK+KLYIFNLPWSFSVVDIKE F
Sbjct: 61  PLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQF 120

Query: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180
           GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180

Query: 181 PPPPKPPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYG 240
           PPPPKPPGPPP ETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240

Query: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 287
           FVSFATREEAETALSSLEGKELMGRPLRLKFSER+V +SETPKED VESQPEES
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294

[Close]

BLAST of Bhi11G000015 vs. ExPASy TrEMBL
Match: A0A1S3BK84 (28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 PE=4 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 3.2e-132
Identity = 256/287 (89.20%), Postives = 269/287 (93.73%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-SSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSR 60
           MATLESA+PIIS Y+ SSSSSKL  NKLPSAIKLRISFSSPL  LNP T ISP+S + SR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  NHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVT 120
           N GGGG  RLCSAVQEVSLEEASE+ +DVNQKKKLYIFNLPWS SVVDIKELFGQCGTV+
Sbjct: 61  NPGGGG--RLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVS 120

Query: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPP 180
           DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKPP
Sbjct: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPP 180

Query: 181 GPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATR 240
           GPPP ETVNKLYVSNLAWKVRSSNLR+FFSE+FNP+AARVVFDSPSGRSAGYGFVSFATR
Sbjct: 181 GPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATR 240

Query: 241 EEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 287
           EEA+TALSSLEGKELMGRPLRLKFSER+VNESETPKED VESQPEES
Sbjct: 241 EEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 285

[Close]

BLAST of Bhi11G000015 vs. ExPASy TrEMBL
Match: A0A6J1E5Z7 (33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431035 PE=4 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.2e-131
Identity = 258/290 (88.97%), Postives = 268/290 (92.41%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-SSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHL-- 60
           MATLESAIPIISQYI SSSSSKL +  LPSAIKLRISFSSPL   NPTTA+SPL L L  
Sbjct: 1   MATLESAIPIISQYISSSSSSKLSIRTLPSAIKLRISFSSPLLSFNPTTAVSPLPLFLTN 60

Query: 61  -SRNHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCG 120
            SRN GGGG  R CSAVQEVSLEEASE+N+DVNQK+KLYIFNLPWSFSVVDIKE FGQCG
Sbjct: 61  PSRNRGGGG--RFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQFGQCG 120

Query: 121 TVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPP 180
           TVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPP
Sbjct: 121 TVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPP 180

Query: 181 KPPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSF 240
           KPPGPPP ETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYGFVSF
Sbjct: 181 KPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYGFVSF 240

Query: 241 ATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 287
           ATREEAETALSSLEGKELMGRPLRLKFSER V +SETPKED VESQPEES
Sbjct: 241 ATREEAETALSSLEGKELMGRPLRLKFSERTVVKSETPKEDTVESQPEES 288

[Close]

BLAST of Bhi11G000015 vs. ExPASy TrEMBL
Match: A0A6J1KZ42 (29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111500156 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 6.1e-131
Identity = 256/294 (87.07%), Postives = 268/294 (91.16%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-------SSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPL 60
           MATLESAIPIISQYI       SSSSSKL  +KLPSAIKLRISFSSPL  LNPTTA+SPL
Sbjct: 1   MATLESAIPIISQYIASSSSSSSSSSSKLSFHKLPSAIKLRISFSSPLLSLNPTTAVSPL 60

Query: 61  SLHLSRN-HGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELF 120
            L L+      GGG R CSAVQEVSLEEASE+N+DVNQK+KLYIFNLPWSFSVVDIKE F
Sbjct: 61  PLFLTNPWRNRGGGDRFCSAVQEVSLEEASEENQDVNQKRKLYIFNLPWSFSVVDIKEQF 120

Query: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180
           GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK
Sbjct: 121 GQCGTVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKK 180

Query: 181 PPPPKPPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYG 240
           PPPPKPPGPPP ETV+KLYVSNLAWK RS+NLREFFSENFNP+AARVVFDSPSG+SAGYG
Sbjct: 181 PPPPKPPGPPPGETVHKLYVSNLAWKARSTNLREFFSENFNPIAARVVFDSPSGKSAGYG 240

Query: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 287
           FVSFATREEAETALSSLEGKELMGRPLRLKFSER+V +SETPKED VESQPEES
Sbjct: 241 FVSFATREEAETALSSLEGKELMGRPLRLKFSERSVVKSETPKEDTVESQPEES 294

[Close]

BLAST of Bhi11G000015 vs. ExPASy TrEMBL
Match: A0A0A0L1U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 1.0e-130
Identity = 252/290 (86.90%), Postives = 268/290 (92.41%), Query Frame = 0


Query: 1   MATLESAIPIISQYISSSS----SKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLH 60
           M T+ES +PIIS YISSSS    SKL  NKLPS IKLRISFSSPL  LNPTT ISP S +
Sbjct: 1   MVTIESPLPIISPYISSSSSSSASKLCFNKLPSPIKLRISFSSPLLSLNPTTPISPTSFN 60

Query: 61  LSRNHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCG 120
            SRN   GGG+RLCSA+QEV+LEEASE+N+DVNQK+KLYIFNLPWS SVVDIKELFGQCG
Sbjct: 61  SSRNR--GGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCG 120

Query: 121 TVTDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPP 180
           TV+DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPP
Sbjct: 121 TVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPP 180

Query: 181 KPPGPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSF 240
           KPPGPPP ETVNKLYVSNLAWKVRS+NLR+FFSENFNP+AARVVFDSP+GRSAGYGFVSF
Sbjct: 181 KPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSF 240

Query: 241 ATREEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 287
           ATREEA+TALSSLEGKELMGRPLRLKFSERNVNE+ETPKED VESQPEES
Sbjct: 241 ATREEAQTALSSLEGKELMGRPLRLKFSERNVNEAETPKEDIVESQPEES 288

[Close]

BLAST of Bhi11G000015 vs. ExPASy TrEMBL
Match: A0A5A7UAR3 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001500 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.1e-129
Identity = 254/287 (88.50%), Postives = 267/287 (93.03%), Query Frame = 0


Query: 1   MATLESAIPIISQYI-SSSSSKLRLNKLPSAIKLRISFSSPLRPLNPTTAISPLSLHLSR 60
           MATLESA+PIIS Y+ SSSSSKL  NKLPSAIKLRISFSSPL  LNP T ISP+S + SR
Sbjct: 1   MATLESALPIISPYVSSSSSSKLCFNKLPSAIKLRISFSSPLLSLNPPTPISPISFNSSR 60

Query: 61  NHGGGGGSRLCSAVQEVSLEEASEQNEDVNQKKKLYIFNLPWSFSVVDIKELFGQCGTVT 120
           N GGGG  RLCSAVQEVSLEEASE+ +DVNQKKKLYIFNLPWS SVVDIKELFGQCGTV+
Sbjct: 61  NPGGGG--RLCSAVQEVSLEEASEETQDVNQKKKLYIFNLPWSLSVVDIKELFGQCGTVS 120

Query: 121 DVEIIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPP 180
           D  IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKR K+PPPPKPP
Sbjct: 121 D--IIKQKNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRFKRPPPPKPP 180

Query: 181 GPPPVETVNKLYVSNLAWKVRSSNLREFFSENFNPVAARVVFDSPSGRSAGYGFVSFATR 240
           GPPP ETVNKLYVSNLAWKVRSSNLR+FFSE+FNP+AARVVFDSPSGRSAGYGFVSFATR
Sbjct: 181 GPPPGETVNKLYVSNLAWKVRSSNLRDFFSESFNPIAARVVFDSPSGRSAGYGFVSFATR 240

Query: 241 EEAETALSSLEGKELMGRPLRLKFSERNVNESETPKEDNVESQPEES 287
           EEA+TALSSLEGKELMGRPLRLKFSER+VNESETPKED VESQPEES
Sbjct: 241 EEAQTALSSLEGKELMGRPLRLKFSERSVNESETPKEDIVESQPEES 283

The following BLAST results are available for this feature:

BLAST of Bhi11G000015 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35410.1	5.3e-71	54.61	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.1	1.2e-35	38.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	8.1e-35	40.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	2.1e-30	33.93	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	3.0e-29	42.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Bhi11G000015 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19684	9.9e-30	31.65	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q39061	2.9e-29	33.93	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
Q08935	3.8e-29	34.91	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P19683	1.6e-27	34.72	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P49313	4.6e-27	33.81	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of Bhi11G000015 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904114.1	7.5e-152	100.00	33 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
KAG6577717.1	1.2e-133	89.97	hypothetical protein SDJN03_25291, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008448669.1	6.6e-132	89.20	PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Cucumis melo]	[more]
XP_022923294.1	2.5e-131	88.97	33 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata]	[more]
XP_023007582.1	1.3e-130	87.07	29 kDa ribonucleoprotein A, chloroplastic [Cucurbita maxima]	[more]

BLAST of Bhi11G000015 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK84	3.2e-132	89.20	28 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490770 ...	[more]
A0A6J1E5Z7	1.2e-131	88.97	33 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KZ42	6.1e-131	87.07	29 kDa ribonucleoprotein A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1115...	[more]
A0A0A0L1U2	1.0e-130	86.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009490 PE=4 SV=1	[more]
A0A5A7UAR3	1.1e-129	88.50	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 189..262 e-value: 1.3E-21 score: 87.8 coord: 93..165 e-value: 8.8E-27 score: 105.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 190..260 e-value: 1.6E-17 score: 63.1 coord: 94..163 e-value: 1.5E-18 score: 66.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 92..169 score: 19.246052
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 188..266 score: 18.018063
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 67..172 e-value: 1.2E-28 score: 102.0 coord: 173..277 e-value: 8.0E-24 score: 86.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..280
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 4..280
None	No IPR available	PANTHER	PTHR48025:SF6	CHLOROPLAST, PUTATIVE-RELATED	coord: 4..280
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 92..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000015	Bhi11M000015	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding