Bhi10G000954 (gene) Wax gourd (B227) v1

Overview


Name	Bhi10G000954
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	ATP synthase epsilon chain, chloroplastic
Location	chr10: 27424786 .. 27424983 (-)
RNA-Seq Expression	Bhi10G000954
Synteny	Bhi10G000954

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTGATTGGTGGTTTTGCTAGAATAGGCAATAATGAGGCCACTATTTTAGTAAATGATGCGAAAAATGCTAGTCACATTGATCCACAAGAAGCTCAACAAACTCTAGAAATAGCAGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCATGGCAAATTTAGCTCTCAGACGAGCTAGGACACAA

mRNA sequence

ATGGCTCTGATTGGTGGTTTTGCTAGAATAGGCAATAATGAGGCCACTATTTTAGTAAATGATGCGAAAAATGCTAGTCACATTGATCCACAAGAAGCTCAACAAACTCTAGAAATAGCAGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCATGGCAAATTTAGCTCTCAGACGAGCTAGGACACAA

Coding sequence (CDS)

ATGGCTCTGATTGGTGGTTTTGCTAGAATAGGCAATAATGAGGCCACTATTTTAGTAAATGATGCGAAAAATGCTAGTCACATTGATCCACAAGAAGCTCAACAAACTCTAGAAATAGCAGAAGCTAACTTGAGGAAAGCTCAGGGCAAGAGACAAACAATCATGGCAAATTTAGCTCTCAGACGAGCTAGGACACAA

Protein sequence

MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLALRRARTQ

Homology

[Close]

BLAST of Bhi10G000954 vs. TAIR 10
Match: ATCG00470.1 (ATP synthase epsilon chain )

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-23
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+  S IDPQEAQQTLEIAEANLRKA+GKRQTI ANLAL
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEANLAL 119

Query: 61  RRARTQ 67
           RRART+
Sbjct: 120 RRARTR 125

[Close]

BLAST of Bhi10G000954 vs. ExPASy Swiss-Prot
Match: Q4VZG9 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.1e-23
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+ AS IDPQEAQQTLEIAEANLRKAQGKRQTI ANLAL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RRARTQ 67
           RRART+
Sbjct: 122 RRARTR 127

[Close]

BLAST of Bhi10G000954 vs. ExPASy Swiss-Prot
Match: P09468 (ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpE PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 3.0e-22
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+  S IDPQEAQQTLEIAEANLRKA+GKRQTI ANLAL
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEANLAL 119

Query: 61  RRARTQ 67
           RRART+
Sbjct: 120 RRARTR 125

[Close]

BLAST of Bhi10G000954 vs. ExPASy Swiss-Prot
Match: Q09MH2 (ATP synthase epsilon chain, chloroplastic OS=Citrus sinensis OX=2711 GN=atpE PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.7e-22
Identity = 56/66 (84.85%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+ +S IDPQEAQQTLEIAEANLRKA+ KRQTI ANLAL
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKSSDIDPQEAQQTLEIAEANLRKAESKRQTIEANLAL 119

Query: 61  RRARTQ 67
           RRART+
Sbjct: 120 RRARTR 125

[Close]

BLAST of Bhi10G000954 vs. ExPASy Swiss-Prot
Match: Q49KZ2 (ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpE PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.7e-22
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+  S IDPQEAQ+TLE+AEANLRKA+GKRQTI ANLAL
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKGSDIDPQEAQETLELAEANLRKAEGKRQTIEANLAL 119

Query: 61  RRARTQ 67
           RRART+
Sbjct: 120 RRARTR 125

[Close]

BLAST of Bhi10G000954 vs. ExPASy Swiss-Prot
Match: A0ZZ41 (ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpE PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.7e-22
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+  S IDPQEAQQ LEIAEANLRKA+GKRQTI ANLAL
Sbjct: 60  MALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEANLAL 119

Query: 61  RRARTQ 67
           RRART+
Sbjct: 120 RRARTR 125

[Close]

BLAST of Bhi10G000954 vs. NCBI nr
Match: YP_009752081.1 (CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilon [Corallocarpus boehmii] >QIT05491.1 CF1 subunit epsilon [Dendrosicyos socotranus] >QIT06167.1 CF1 subunit epsilon [Corallocarpus boehmii])

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+ AS IDPQEAQQTLEIAEANLRKAQGKRQTI ANLAL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RRARTQ 67
           RRART+
Sbjct: 122 RRARTR 127

[Close]

BLAST of Bhi10G000954 vs. NCBI nr
Match: YP_009752418.1 (CF1 subunit epsilon [Trichosanthes tricuspidata] >YP_009753626.1 CF1 subunit epsilon [Trichosanthes wallichiana] >YP_009753711.1 CF1 subunit epsilon [Trichosanthes nervifolia] >QIT04645.1 CF1 subunit epsilon [Trichosanthes wallichiana] >QIT04814.1 CF1 subunit epsilon [Trichosanthes tricuspidata] >QIT05322.1 CF1 subunit epsilon [Trichosanthes nervifolia])

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+ AS IDPQEAQQTLEIAEANLRKAQGKRQTI ANLAL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RRART 66
           RRART
Sbjct: 122 RRART 126

[Close]

BLAST of Bhi10G000954 vs. NCBI nr
Match: ASY96329.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis])

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+ AS IDPQEAQQTLEIAEANLRKAQGKRQTI ANLAL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RRARTQ 67
           RRART+
Sbjct: 122 RRARTR 127

[Close]

BLAST of Bhi10G000954 vs. NCBI nr
Match: ALO22128.1 (AtpE [Cucurbita ficifolia] >QWV60846.1 ATP synthase CF1 epsilon subunit [Cucurbita ficifolia] >QZL38791.1 ATP synthase CF1 epsilon subunit [Cucurbita ficifolia])

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+ AS IDPQEAQQTLEIAEANLRKAQGKRQTI ANLAL
Sbjct: 64  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 123

Query: 61  RRARTQ 67
           RRART+
Sbjct: 124 RRARTR 129

[Close]

BLAST of Bhi10G000954 vs. NCBI nr
Match: YP_004841789.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo] >YP_009004050.1 ATP synthase CF1 epsilon subunit [Cucumis hystrix] >YP_009317392.1 ATP synthase CF1 epsilon subunit [Coccinia grandis] >YP_009325995.1 ATP synthase CF1 epsilon subunit [Citrullus lanatus] >YP_009348037.1 ATP synthase CF1 epsilon subunit [Citrullus mucosospermus] >YP_009420800.1 ATP synthase CF1 epsilon subunit [Citrullus colocynthis] >YP_009431563.1 ATP synthase CF1 epsilon subunit [Citrullus amarus] >YP_009431648.1 ATP synthase CF1 epsilon subunit [Citrullus rehmii] >YP_009456152.1 ATP synthase CF1 epsilon subunit [Lagenaria siceraria] >YP_009860079.1 ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis] >YP_247605.1 ATP synthase CF1 epsilon subunit [Cucumis sativus] >Q4VZG9.1 RecName: Full=ATP synthase epsilon chain, chloroplastic; AltName: Full=ATP synthase F1 sector epsilon subunit; AltName: Full=F-ATPase epsilon subunit [Cucumis sativus] >ALF03307.1 ATP synthase CF1 epsilon subunit [Cucumis sativus var. hardwickii] >APW82467.1 ATP synthase CF1 epsilon subunit [Citrullus lanatus subsp. vulgaris] >ASY96590.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. conomon] >ASY96677.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa] >ASY96764.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. momordica] >ASY96851.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. dudaim] >ASY96938.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. cantalupo] >ASY97112.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. inodorus] >ASY97286.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. flexuosus] >AVE15337.1 AtpE [Cucumis sativus var. sativus] >QJF46389.1 ATP synthase CF1 epsilon subunit [Cucumis melo] >QNM38537.1 ATP synthase CF1 epsilon subunit [Lagenaria siceraria var. microcarpa] >QZL38599.1 CF1 subunit epsilon [Citrullus naudinianus] >QZL38687.1 CF1 subunit epsilon [Citrullus ecirrhosus])

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+ AS IDPQEAQQTLEIAEANLRKAQGKRQTI ANLAL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RRARTQ 67
           RRART+
Sbjct: 122 RRARTR 127

[Close]

BLAST of Bhi10G000954 vs. ExPASy TrEMBL
Match: A0A218KG49 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=atpE PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.7e-21
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+ AS IDPQEAQQTLEIAEANLRKAQGKRQTI ANLAL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RRARTQ 67
           RRART+
Sbjct: 122 RRARTR 127

[Close]

BLAST of Bhi10G000954 vs. ExPASy TrEMBL
Match: A0A6H0ERT4 (ATP synthase epsilon chain, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=atpE PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.7e-21
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+ AS IDPQEAQQTLEIAEANLRKAQGKRQTI ANLAL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RRART 66
           RRART
Sbjct: 122 RRART 126

[Close]

BLAST of Bhi10G000954 vs. ExPASy TrEMBL
Match: G3ETZ1 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=atpE PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.7e-21
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+ AS IDPQEAQQTLEIAEANLRKAQGKRQTI ANLAL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RRARTQ 67
           RRART+
Sbjct: 122 RRARTR 127

[Close]

BLAST of Bhi10G000954 vs. ExPASy TrEMBL
Match: A0A1X9Q1L0 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.7e-21
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+ AS IDPQEAQQTLEIAEANLRKAQGKRQTI ANLAL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RRARTQ 67
           RRART+
Sbjct: 122 RRARTR 127

[Close]

BLAST of Bhi10G000954 vs. ExPASy TrEMBL
Match: A0A249RZA2 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=atpE PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.7e-21
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1   MALIGGFARIGNNEATILVNDAKNASHIDPQEAQQTLEIAEANLRKAQGKRQTIMANLAL 60
           MAL+GGFARIGNNE TILVNDA+ AS IDPQEAQQTLEIAEANLRKAQGKRQTI ANLAL
Sbjct: 62  MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLAL 121

Query: 61  RRARTQ 67
           RRART+
Sbjct: 122 RRARTR 127

The following BLAST results are available for this feature:

BLAST of Bhi10G000954 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00470.1	2.1e-23	86.36	ATP synthase epsilon chain	[more]

BLAST of Bhi10G000954 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZG9	2.1e-23	89.39	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=...	[more]
P09468	3.0e-22	86.36	ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atp...	[more]
Q09MH2	6.7e-22	84.85	ATP synthase epsilon chain, chloroplastic OS=Citrus sinensis OX=2711 GN=atpE PE=...	[more]
Q49KZ2	6.7e-22	83.33	ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus...	[more]
A0ZZ41	6.7e-22	84.85	ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atp...	[more]

BLAST of Bhi10G000954 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009752081.1	1.6e-20	89.39	CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilo...	[more]
YP_009752418.1	1.6e-20	90.77	CF1 subunit epsilon [Trichosanthes tricuspidata] >YP_009753626.1 CF1 subunit eps...	[more]
ASY96329.1	1.6e-20	89.39	ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis]	[more]
ALO22128.1	1.6e-20	89.39	AtpE [Cucurbita ficifolia] >QWV60846.1 ATP synthase CF1 epsilon subunit [Cucurbi...	[more]
YP_004841789.1	1.6e-20	89.39	ATP synthase CF1 epsilon subunit [Cucumis melo subsp. melo] >YP_009004050.1 ATP ...	[more]

BLAST of Bhi10G000954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG49	7.7e-21	89.39	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus var. hardwickii OX=...	[more]
A0A6H0ERT4	7.7e-21	90.77	ATP synthase epsilon chain, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=...	[more]
G3ETZ1	7.7e-21	89.39	ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo OX=412675 ...	[more]
A0A1X9Q1L0	7.7e-21	89.39	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=...	[more]
A0A249RZA2	7.7e-21	89.39	ATP synthase epsilon chain, chloroplastic OS=Cucumis melo var. cantalupensis OX=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 37..57
None	No IPR available	GENE3D	6.10.140.480		coord: 30..66 e-value: 1.9E-19 score: 70.9
None	No IPR available	PANTHER	PTHR13822:SF10	ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTIC	coord: 1..66
IPR020547	ATP synthase delta/epsilon subunit, C-terminal domain	PFAM	PF00401	ATP-synt_DE	coord: 28..66 e-value: 3.7E-6 score: 27.1
IPR001469	ATP synthase, F1 complex, delta/epsilon subunit	PANTHER	PTHR13822	ATP SYNTHASE DELTA/EPSILON CHAIN	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M000954	Bhi10M000954	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism