Bhi10G000445 (gene) Wax gourd (B227) v1

Overview
NameBhi10G000445
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRNase H domain-containing protein
Locationchr10: 12079034 .. 12079426 (+)
RNA-Seq ExpressionBhi10G000445
SyntenyBhi10G000445
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCGTGGAATTCTTGTGGGTGTGGCAATCCGATCAATGGAAACAGACTATGAAGCCCCTCTTGCTGAAATTTTAGCCATCCGGGAAGGAATCAAACTTGCAAAATCCATAGCTTGTCACAACTTAATCGTATCGAATCCGACTGCCTTCAAGCCATACATCAAATTTCTGAAGATAAATTACTGGTCTTATGCAGTCGATTACTGGATTGAAGAGATTAGAATACTCAAGAAAGACTGTTGCTCCATTTCTTTTTCCTACTGTCATCGCTTGATAAATGAAACAGCTGATATTTTAGCAAAGAAAGGTAGATGTAATGGTCTTAATGCCTATTGGTATTCTGACTTTCCAATGTGGATTGTGAACATTGTCCAAATGGACAACTTGTAA

mRNA sequence

ATGTTGCGTGGAATTCTTGTGGGTGTGGCAATCCGATCAATGGAAACAGACTATGAAGCCCCTCTTGCTGAAATTTTAGCCATCCGGGAAGGAATCAAACTTGCAAAATCCATAGCTTGTCACAACTTAATCGTATCGAATCCGACTGCCTTCAAGCCATACATCAAATTTCTGAAGATAAATTACTGGTCTTATGCAGTCGATTACTGGATTGAAGAGATTAGAATACTCAAGAAAGACTGTTGCTCCATTTCTTTTTCCTACTGTCATCGCTTGATAAATGAAACAGCTGATATTTTAGCAAAGAAAGGTAGATGTAATGGTCTTAATGCCTATTGGTATTCTGACTTTCCAATGTGGATTGTGAACATTGTCCAAATGGACAACTTGTAA

Coding sequence (CDS)

ATGTTGCGTGGAATTCTTGTGGGTGTGGCAATCCGATCAATGGAAACAGACTATGAAGCCCCTCTTGCTGAAATTTTAGCCATCCGGGAAGGAATCAAACTTGCAAAATCCATAGCTTGTCACAACTTAATCGTATCGAATCCGACTGCCTTCAAGCCATACATCAAATTTCTGAAGATAAATTACTGGTCTTATGCAGTCGATTACTGGATTGAAGAGATTAGAATACTCAAGAAAGACTGTTGCTCCATTTCTTTTTCCTACTGTCATCGCTTGATAAATGAAACAGCTGATATTTTAGCAAAGAAAGGTAGATGTAATGGTCTTAATGCCTATTGGTATTCTGACTTTCCAATGTGGATTGTGAACATTGTCCAAATGGACAACTTGTAA

Protein sequence

MLRGILVGVAIRSMETDYEAPLAEILAIREGIKLAKSIACHNLIVSNPTAFKPYIKFLKINYWSYAVDYWIEEIRILKKDCCSISFSYCHRLINETADILAKKGRCNGLNAYWYSDFPMWIVNIVQMDNL
Homology
BLAST of Bhi10G000445 vs. TAIR 10
Match: AT5G43755.1 (BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G04420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 5.7e-04
Identity = 22/60 (36.67%), Postives = 35/60 (58.33%), Query Frame = 0

Query: 70  WIEEIRILKKDCCSISFSYCHRLINETADILAKKGRCNGLNAYWYSDF-PMWIVNIVQMD 129
           WI EI++ +    +I F++ HR  N+ ADILAK  + + L++Y    F P+ I N +  D
Sbjct: 115 WIHEIKVWRNKFDAIKFTWSHRSTNQPADILAKNQK-HALSSYIVHSFIPLCISNALFSD 173

BLAST of Bhi10G000445 vs. NCBI nr
Match: XP_038902513.1 (uncharacterized protein LOC120089172 [Benincasa hispida])

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-06
Identity = 39/117 (33.33%), Postives = 61/117 (52.14%), Query Frame = 0

Query: 3   RGILVGVAIRSMETDYEAPLAEILAIREGIKLAKSIACHNLIVSNPTAFKPYIKFLKINY 62
           +G L  V I S++  Y  PLAE   + +G++L   +    +IV +  +    + FLKI  
Sbjct: 89  QGSLKVVQISSIDAVYPPPLAEAFVVLQGLRLTSKMNFKKIIVKSDCSGAIDL-FLKILI 148

Query: 63  WSYAVDYWIEEIRILKKDCCSISFSYCHRLINETADILAKKGRCNGLNAYWYSDFPM 120
              +V  W+EEI  +      I+F+Y  R IN+ ADI+AK+ R  G+N  W   + M
Sbjct: 149 SDSSVRVWLEEIWEISIVFYPINFAYIPRNINKLADIVAKRTRILGINDVWMDSYSM 204

BLAST of Bhi10G000445 vs. NCBI nr
Match: VAH65567.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-04
Identity = 36/112 (32.14%), Postives = 55/112 (49.11%), Query Frame = 0

Query: 23  AEILAIREGIKLAKSIACHNLIVSNPTAFKPYIKFLKINYWSYAVDYW------IEEIRI 82
           AE+ AIR GI LA  I C+N+ + +  +F        +N  +   DY       I E + 
Sbjct: 127 AELTAIRNGIYLATHIGCNNIEIESDCSF-------AVNSLNQVDDYLGPEVAIITEYKQ 186

Query: 83  LKKDCCSISFSYCHRLINETADILAKKGRCNGLNAYWYSDFPMWIVNIVQMD 129
           L  D  SISF +C+R  N+ AD LAK       ++ W  + P +I +++  D
Sbjct: 187 LMMDFASISFRHCYREANQVADELAKNTFTTRSSSSWDDEIPDFISHLLVND 231

BLAST of Bhi10G000445 vs. NCBI nr
Match: EMS54402.1 (Ketohexokinase [Triticum urartu])

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 35/112 (31.25%), Postives = 55/112 (49.11%), Query Frame = 0

Query: 23  AEILAIREGIKLAKSIACHNLIVSNPTAFKPYIKFLKINYWSYAVDYWIEEIRI------ 82
           AE+ AIR GI LA  I C+N+ + +  +F        ++  +   DY   E+ I      
Sbjct: 438 AELTAIRNGIYLATHIGCNNIEIESDCSF-------AVDSLNQVDDYLGPEVAIIIEYKQ 497

Query: 83  LKKDCCSISFSYCHRLINETADILAKKGRCNGLNAYWYSDFPMWIVNIVQMD 129
           L  D  SISF +C+R  N+ AD LAK       ++ W  + P +I +++  D
Sbjct: 498 LMMDFASISFRHCYREANQVADKLAKNSFTTRSSSSWDDEIPDFISHLLVND 542

BLAST of Bhi10G000445 vs. NCBI nr
Match: KAF7822782.1 (ribonuclease H [Senna tora])

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-04
Identity = 33/126 (26.19%), Postives = 62/126 (49.21%), Query Frame = 0

Query: 4   GILVGVAIRSMETDYEAPLAEILAIREGIKLAKSIACHNLIVSNPTAFKPYIKFLKIN-Y 63
           G  +G  + S+    +  L E LAIR+G++LA  I C  L+V    +    I+ LK    
Sbjct: 342 GCCLGAFMGSVHAPNDVVLLEALAIRKGLELALKIGCTQLLVEGDASL--VIEMLKTPCT 401

Query: 64  WSYAVDYWIEEIRILKKDCCSISFSYCHRLINETADILAKKGRCNGLNAYWYSDFPMWIV 123
            + A+    ++I    ++   +SF++  R+ N TAD + ++ R +  +A W    P ++ 
Sbjct: 402 QASALSAVCKDILSFSENFQYVSFNWVPRICNSTADYITRQARIDQKDALWIDSVPFFLS 461

Query: 124 NIVQMD 129
            ++  D
Sbjct: 462 EVLSFD 465

BLAST of Bhi10G000445 vs. ExPASy TrEMBL
Match: A0A446NU09 (RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Av1G213860 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 36/112 (32.14%), Postives = 55/112 (49.11%), Query Frame = 0

Query: 23  AEILAIREGIKLAKSIACHNLIVSNPTAFKPYIKFLKINYWSYAVDYW------IEEIRI 82
           AE+ AIR GI LA  I C+N+ + +  +F        +N  +   DY       I E + 
Sbjct: 127 AELTAIRNGIYLATHIGCNNIEIESDCSF-------AVNSLNQVDDYLGPEVAIITEYKQ 186

Query: 83  LKKDCCSISFSYCHRLINETADILAKKGRCNGLNAYWYSDFPMWIVNIVQMD 129
           L  D  SISF +C+R  N+ AD LAK       ++ W  + P +I +++  D
Sbjct: 187 LMMDFASISFRHCYREANQVADELAKNTFTTRSSSSWDDEIPDFISHLLVND 231

BLAST of Bhi10G000445 vs. ExPASy TrEMBL
Match: A0A7C8ZSU5 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 36/128 (28.12%), Postives = 64/128 (50.00%), Query Frame = 0

Query: 4   GILVGVAIRSMETDYEAPLAEILAIREGIKLAKSIACHNLIVSNPTAFKPYIKFLKINYW 63
           G LV  A   M  +++A  +E+ A+R G+K+AKS+  +++I+    A   +     +N  
Sbjct: 180 GGLVASACAKMVGNWDAESSEVCAVRFGMKVAKSLGFNHVILETDAAEVAH----ALNSK 239

Query: 64  SYAVDY---WIEEIRILKKDCCSISFSYCHRLINETADILAKKGRCNGLNAYWYSDFPMW 123
           +Y +DY   ++++   L KD  SI F +  R  N+ A  LA+      +   W    P+ 
Sbjct: 240 TYKLDYSSTFVKDCHHLMKDFSSIKFMHAKRSCNKVAHELAQVALNKDMTKIWVDGGPLE 299

Query: 124 IVNIVQMD 129
           I+ +V  D
Sbjct: 300 IMALVMSD 303

BLAST of Bhi10G000445 vs. ExPASy TrEMBL
Match: M7Z366 (Ketohexokinase OS=Triticum urartu OX=4572 GN=TRIUR3_11649 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-04
Identity = 35/112 (31.25%), Postives = 55/112 (49.11%), Query Frame = 0

Query: 23  AEILAIREGIKLAKSIACHNLIVSNPTAFKPYIKFLKINYWSYAVDYWIEEIRI------ 82
           AE+ AIR GI LA  I C+N+ + +  +F        ++  +   DY   E+ I      
Sbjct: 438 AELTAIRNGIYLATHIGCNNIEIESDCSF-------AVDSLNQVDDYLGPEVAIIIEYKQ 497

Query: 83  LKKDCCSISFSYCHRLINETADILAKKGRCNGLNAYWYSDFPMWIVNIVQMD 129
           L  D  SISF +C+R  N+ AD LAK       ++ W  + P +I +++  D
Sbjct: 498 LMMDFASISFRHCYREANQVADKLAKNSFTTRSSSSWDDEIPDFISHLLVND 542

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G43755.15.7e-0436.67BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuc... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038902513.12.6e-0633.33uncharacterized protein LOC120089172 [Benincasa hispida][more]
VAH65567.13.1e-0432.14unnamed protein product [Triticum turgidum subsp. durum][more]
EMS54402.17.0e-0431.25Ketohexokinase [Triticum urartu][more]
KAF7822782.17.0e-0426.19ribonuclease H [Senna tora][more]
Match NameE-valueIdentityDescription
A0A446NU091.5e-0432.14RNase H domain-containing protein OS=Triticum turgidum subsp. durum OX=4567 GN=T... [more]
A0A7C8ZSU52.0e-0428.13Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
M7Z3663.4e-0431.25Ketohexokinase OS=Triticum urartu OX=4572 GN=TRIUR3_11649 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 4..103
e-value: 5.8E-7
score: 29.4
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 17..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi10M000445Bhi10M000445mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity