Bhi10G000229 (gene) Wax gourd (B227) v1

Overview
NameBhi10G000229
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionProtein Ycf2
Locationchr10: 6597633 .. 6597785 (+)
RNA-Seq ExpressionBhi10G000229
SyntenyBhi10G000229
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATCAGATCCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTTCCGAGGAAGAGGCGAAACATAATCAACTTGAATCCGGGACAGCTATTCGAAATCTTAGTGAAAGACTGGATTTGTTATCTCATGTTTGCTTTTCGTGA

mRNA sequence

ATGGATGATCAGATCCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTTCCGAGGAAGAGGCGAAACATAATCAACTTGAATCCGGGACAGCTATTCGAAATCTTAGTGAAAGACTGGATTTGTTATCTCATGTTTGCTTTTCGTGA

Coding sequence (CDS)

ATGGATGATCAGATCCGCAAGGACCATGATTGGGAATTGTTTGATCGTCTTTCTTCCGAGGAAGAGGCGAAACATAATCAACTTGAATCCGGGACAGCTATTCGAAATCTTAGTGAAAGACTGGATTTGTTATCTCATGTTTGCTTTTCGTGA

Protein sequence

MDDQIRKDHDWELFDRLSSEEEAKHNQLESGTAIRNLSERLDLLSHVCFS
Homology
[Close]
BLAST of Bhi10G000229 vs. NCBI nr
Match: KAF1854531.1 (hypothetical protein Lal_00043424 [Lupinus albus])

HSP 1 Score: 63.5 bits (153), Expect = 5.8e-07
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 1  MDDQIRKDHDWELFDRLSSEEEAKHNQLESGTAIRNLSERLD 43
          MDD IRKDHDWELFD      +AKHNQLE GTAIRNLSERLD
Sbjct: 3  MDDPIRKDHDWELFD------QAKHNQLEFGTAIRNLSERLD 38

[Close]
BLAST of Bhi10G000229 vs. NCBI nr
Match: KAF1855481.1 (hypothetical protein Lal_00044204 [Lupinus albus])

HSP 1 Score: 63.5 bits (153), Expect = 5.8e-07
Identity = 33/50 (66.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 1   MDDQIRKDHDWELFDRLSSEEEAKHNQLESGTAIRNLSERLDLLSHVCFS 51
           MDD IRKDHDWELFDRLS  +      L SG     L ERLDLLSHVCFS
Sbjct: 736 MDDPIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVERLDLLSHVCFS 785

[Close]
BLAST of Bhi10G000229 vs. NCBI nr
Match: YP_009724546.1 (hypothetical chloroplast RF21 [Vachellia nilotica] >YP_009724567.1 hypothetical chloroplast RF21 [Vachellia nilotica] >QGT77182.1 hypothetical chloroplast RF21 [Vachellia nilotica] >QGT77203.1 hypothetical chloroplast RF21 [Vachellia nilotica])

HSP 1 Score: 63.2 bits (152), Expect = 7.6e-07
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 19  SEEEAKHNQLESGTAIRNLSERLDLLSHVCFS 51
           SEEEAKHNQLE GTAIRNLSERLDLLSHVCFS
Sbjct: 241 SEEEAKHNQLEFGTAIRNLSERLDLLSHVCFS 272

[Close]
BLAST of Bhi10G000229 vs. NCBI nr
Match: QDF64577.1 (hypothetical chloroplast RF21 [Teucrium stocksianum subsp. stocksianum] >QDF64597.1 hypothetical chloroplast RF21 [Teucrium stocksianum subsp. stocksianum])

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 19  SEEEAKHNQLESGTAIRNLSERLDLLSHVCFS 51
           SEE AKHNQLE GTAI NLSERLDLLSHVCFS
Sbjct: 242 SEEGAKHNQLEFGTAIGNLSERLDLLSHVCFS 273

[Close]
BLAST of Bhi10G000229 vs. ExPASy TrEMBL
Match: A0A6A5L0K9 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043424 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 0 

Query: 1  MDDQIRKDHDWELFDRLSSEEEAKHNQLESGTAIRNLSERLD 43
          MDD IRKDHDWELFD      +AKHNQLE GTAIRNLSERLD
Sbjct: 3  MDDPIRKDHDWELFD------QAKHNQLEFGTAIRNLSERLD 38

[Close]
BLAST of Bhi10G000229 vs. ExPASy TrEMBL
Match: A0A6A5L332 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00044204 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-07
Identity = 33/50 (66.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 1   MDDQIRKDHDWELFDRLSSEEEAKHNQLESGTAIRNLSERLDLLSHVCFS 51
           MDD IRKDHDWELFDRLS  +      L SG     L ERLDLLSHVCFS
Sbjct: 736 MDDPIRKDHDWELFDRLSPRKRRNIINLNSGQLFEILVERLDLLSHVCFS 785

[Close]
BLAST of Bhi10G000229 vs. ExPASy TrEMBL
Match: A0A650F2L1 (Protein Ycf2 OS=Vachellia nilotica OX=138033 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-07
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 19  SEEEAKHNQLESGTAIRNLSERLDLLSHVCFS 51
           SEEEAKHNQLE GTAIRNLSERLDLLSHVCFS
Sbjct: 241 SEEEAKHNQLEFGTAIRNLSERLDLLSHVCFS 272

[Close]
BLAST of Bhi10G000229 vs. ExPASy TrEMBL
Match: A0A4Y6I5L0 (Protein Ycf2 OS=Teucrium stocksianum subsp. stocksianum OX=2172032 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-05
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 19  SEEEAKHNQLESGTAIRNLSERLDLLSHVCFS 51
           SEE AKHNQLE GTAI NLSERLDLLSHVCFS
Sbjct: 242 SEEGAKHNQLEFGTAIGNLSERLDLLSHVCFS 273

The following BLAST results are available for this feature:
BLAST of Bhi10G000229 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi10G000229 vs.
Match NameE-valueIdentityDescription
BLAST of Bhi10G000229 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF1854531.15.8e-0778.57hypothetical protein Lal_00043424 [Lupinus albus][more]
KAF1855481.15.8e-0766.00hypothetical protein Lal_00044204 [Lupinus albus][more]
YP_009724546.17.6e-0796.88hypothetical chloroplast RF21 [Vachellia nilotica] >YP_009724567.1 hypothetical ... [more]
QDF64577.13.2e-0590.63hypothetical chloroplast RF21 [Teucrium stocksianum subsp. stocksianum] >QDF6459... [more]
BLAST of Bhi10G000229 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6A5L0K92.8e-0778.57Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00043424 PE=4 SV=1[more]
A0A6A5L3322.8e-0766.00Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00044204 PE=4 SV=1[more]
A0A650F2L13.7e-0796.88Protein Ycf2 OS=Vachellia nilotica OX=138033 GN=ycf2 PE=3 SV=1[more]
A0A4Y6I5L01.5e-0590.63Protein Ycf2 OS=Teucrium stocksianum subsp. stocksianum OX=2172032 GN=ycf2 PE=3 ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi10M000229Bhi10M000229mRNA