Bhi09G002813 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G002813
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Histidine-rich glycoprotein-like isoform X2
Location	chr9: 86945468 .. 86946095 (-)
RNA-Seq Expression	Bhi09G002813
Synteny	Bhi09G002813

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGGCTAAATTTAAATTTCCATTGGCAAAATTATCCACACATACCACACACAAACACGGAGCGAAAAAAGAAAAAATAAAGAGGCAACAATGACGACGATAATGAATTCATGTAAGGCATCAACAACACCGAGAAAGGTTAGGATTGTCTCCACGACAATGCTAGTCATTGCTACTCTTAGCATTGTCGTCGTCTTGCTTCCGATAGGGGCAGAAGCGAATATTCCGATTGTCGGTACGATTGCTCAATGCGTTCAAGGGTGCACAAAGTCATTGTCAACTTTAACTCCCAGTTATTGTACGAGTGTTTGTGGAGCTGAGTATAGGCCTCTAACAAGCCATAGAGAGAATTCTCATCTTCATCATCATCATGGTCATGATCATGATCATAATAATGATGTTCCTAAGCATCATAATATTGGTGATGCTATTGTACCAAGTTAAGAGTGTGTGTGTGGTGTGTACACTTTTAATTCATTTCCCATTGTTATTATTATTAATGGGATTATATGATCATTTTATTTATGCCTCTTTTTCTCTTGTAAGCTCTTTCTAAAACCCATTTGCTTTTTGTATAATGTGTTCATCTCAAATTTGACTTGAATCAAAATATATTTTAGAGGTCGAA

mRNA sequence

CTTGGCTAAATTTAAATTTCCATTGGCAAAATTATCCACACATACCACACACAAACACGGAGCGAAAAAAGAAAAAATAAAGAGGCAACAATGACGACGATAATGAATTCATGTAAGGCATCAACAACACCGAGAAAGGTTAGGATTGTCTCCACGACAATGCTAGTCATTGCTACTCTTAGCATTGTCGTCGTCTTGCTTCCGATAGGGGCAGAAGCGAATATTCCGATTGTCGGTACGATTGCTCAATGCGTTCAAGGGTGCACAAAGTCATTGTCAACTTTAACTCCCAGTTATTGTACGAGTGTTTGTGGAGCTGAGTATAGGCCTCTAACAAGCCATAGAGAGAATTCTCATCTTCATCATCATCATGGTCATGATCATGATCATAATAATGATGTTCCTAAGCATCATAATATTGGTGATGCTATTGTACCAAGTTAAGAGTGTGTGTGTGGTGTGTACACTTTTAATTCATTTCCCATTGTTATTATTATTAATGGGATTATATGATCATTTTATTTATGCCTCTTTTTCTCTTGTAAGCTCTTTCTAAAACCCATTTGCTTTTTGTATAATGTGTTCATCTCAAATTTGACTTGAATCAAAATATATTTTAGAGGTCGAA

Coding sequence (CDS)

ATGACGACGATAATGAATTCATGTAAGGCATCAACAACACCGAGAAAGGTTAGGATTGTCTCCACGACAATGCTAGTCATTGCTACTCTTAGCATTGTCGTCGTCTTGCTTCCGATAGGGGCAGAAGCGAATATTCCGATTGTCGGTACGATTGCTCAATGCGTTCAAGGGTGCACAAAGTCATTGTCAACTTTAACTCCCAGTTATTGTACGAGTGTTTGTGGAGCTGAGTATAGGCCTCTAACAAGCCATAGAGAGAATTCTCATCTTCATCATCATCATGGTCATGATCATGATCATAATAATGATGTTCCTAAGCATCATAATATTGGTGATGCTATTGTACCAAGTTAA

Protein sequence

MTTIMNSCKASTTPRKVRIVSTTMLVIATLSIVVVLLPIGAEANIPIVGTIAQCVQGCTKSLSTLTPSYCTSVCGAEYRPLTSHRENSHLHHHHGHDHDHNNDVPKHHNIGDAIVPS

Homology

[Close]

BLAST of Bhi09G002813 vs. ExPASy TrEMBL
Match: A0A5A7VAR8 (Histidine-rich glycoprotein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004060 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.9e-16
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 25  LVIATLSIVVVLLPIGAEANIPIVGTIAQCVQGCTKSLSTLTPSYCTSVCGAEYRPLTS- 84
           +++ATLSIV+V LP+GAEA IP+VG IAQC+QGCT+SLSTLTP YC ++CGAEY PLT+ 
Sbjct: 1   MIVATLSIVIVSLPMGAEA-IPLVGPIAQCIQGCTRSLSTLTPGYCMNICGAEYHPLTNP 60

Query: 85  ---------------HRENSHLHHHHGHDHDHNNDVPKHHN 110
                          H  + H  HHH H H+H++   +HH+
Sbjct: 61  IQDTHQKHHVQVEHHHEHHVHFEHHHEHRHEHHHVQVEHHH 100

The following BLAST results are available for this feature:

BLAST of Bhi09G002813 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G002813 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G002813 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAR8	5.9e-16	51.49	Histidine-rich glycoprotein-like isoform X2 OS=Cucumis melo var. makuwa OX=11946...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M002813	Bhi09M002813	mRNA