Bhi09G002739 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G002739
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	calmodulin-like
Location	chr9: 85441035 .. 85444289 (+)
RNA-Seq Expression	Bhi09G002739
Synteny	Bhi09G002739

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAAGGGGATGTCCTTTCAACGCCGAGAATCTCGGAAACCTACTTGTCAGAAGAGTATTTTCCAAAACTCTTGAGATGCCTCCCGTAAGTCTCTCCAAATTTCTAAACATCTGTATTACCTCGTTTATCTTATCTACTGCAAAATAAATATGATGGTGATAATCCAGATGCTCATTTTAGAAAAATTTTGAATTACCATGAAACAGATGACTACTAAAATGTAGTCATACTTAATGAAAGCTCCATCTGAGACCAAAATGTTATAAGTGTATTTGAGTCGTAGGGCTTTTTCCTAGACAAAAAGCACATATTAAAGGACATCTGTACGATGATGCATTACTACACTTAGGACCACTCTCTTTAAAATTTAATGTTTAAAATATTGAAACTTATGCTCTCTATAATCTACTATCTCATGTTTTTATTTAAAGGAGAAAAATACTTAGGTGATCTTTGGGCTACACTATCTACAACCTAGAGACTTGTCCAGAAAAAAATTGTAGATAACTATTTTTATTTTTTTTCAGAAAAATAATTATTTTAATTTTTCTTTGTGTGTTGAAAAAAGAGATTGCACCTAATCACTGTCTTTTTAATAGAGAGTATATACATATATATACATACATACATACATATACATACATACATATACATACATACATATACATACATACATATATATATCTGTCTCTTATACACATCTAGATGTGTATAAGAGACAGATATATATATATATGAGTGTGTGAGACAAAATATTACTATTTCTAGTATATTTTTAAATATATTTCAAATGGTAGGCTTTGTTTAGAATAACATAATTTTTGAGAGATTTCAAATTTCATTTTTATGTAAATTAAGAAAATTGACTAAAATATAATGATTAAATTTCATAGGACTTGGCATGAAGTCTTATTTAACCTTGTATTTCCTCATTTTAAATTAACAAATCATAATTAAAAACTTTGTGAGTAAATTTATTATCTTTCATTTTTTTATTACCATTAATTGATTAGCAATTTCACTTTTCACGTTTGGCTCAAGCTGACAAGTAAGAGAACTCACATCGATGTAATATCGAGTCGAGTACACTTTGGTGCATAAGTCAGTATACATGTGTTAAGATTGATTAAGCACCATGATTGAATTGATACAAGATAAAAGGCTACGTATCTTCCTATTTTGAGACATATAGAATAGAGAGTTTTGTTACGTAGACTTGAAACTTGAAACTGTAGACCCTAAACTTAACTTAAATAATAATATGTATCTAAATATAAAATTTTAAATTTTTCTTACACGGAGTAAAAAAAATTAAAATTATTTATCGAATTGTAGGAGGGAATATAATTTTTGAAAGGTGGGTGGAAGTGGGAGGAGGATCGGTTCTGATCTTTAAAATTACATCGACACAGAGATTCTAATAACCTATATTTATCCTTTTAACGTTTCTCTCTCTTTTATTTATTTTTTCTTATTTACAAGCTTCCACCAAAATATCGTTGTCCAATAAATAGAAAAATGCAAAGAATTATTGGATTCCAATATCACAATTTAATTTCAAGTTTCAAGTCCGTAATCTCAACAAAGCATAAAATTAAAGAAATAGCGCAATTATACACATAATTAACTGGTGAAATTTTTAACATGGATAAAATGAAAATTTAAGTTTTTTTCCCTTTTTTTGTACAAGAAAATTTAATTCTCCTCTCTCTCGTTTTAAATATTTTAATTCAAAACATCGCGTCCTAATTAAAGGAATATATAAATACATGTACTTAAAGATGCTTTAATTTGATAATGGTTATTAATTGATTATTGCATGATTTGAAACTTTAAAAAAGGCTTCAACTTGAGAAAAAAACAATTAAAAAAAAAACCTTAAGAAAGAAAATTCATTTGATTTAAGTGGACTGTTGATTATGAAATTATGAAGTAAAATTTATATATGCCTTTCTAATCAAGGATTTTACTGATGATACAAGCTACATAAATTTGAAAAATACACCATAGTATACCGTTTTTTATTTGTACATTTAAAAAAAATGCTTAAAACTTCAAAACTACTTTTAAAAAATAGATTTTGAAATTGCATGAAATACCAAATAAAAATAAGACACTTATTACCTTCTTTTGAGTCGAATCCTCCTCTCTCTTCTTTGTTCAACTAAAAAAAACATTTTTCAAAAATGAAAAACAAAAAACAAGATAGAATAGGTTTAACCCTTCACTTTTATTTGTCATTCTTTTTCAAAATGTTAATTAACCCCTTCACTTTTGGTTTATAGTTTTGCAGTTTTAGTATTCTATTTAATCTCGGTTAAGTAAGTTTTGTTTGGACTTATAAATTTGTGTTTCGCTAAGCTTAAGAAGTTCTTTTGTTTTGTTTTTTTTTTTTTTTTGGCAAATTGCAAAAACCAAGTATGGTGGTAATTATTTTTAAACTTTTCATGATAAAAGTTGGGCTCTCAAACTTCTTTAAGTATTAAAATCGGACCATGATAAGAATTGAAATCCTCCCACTTATATAATTGTCAATTTCAACGTATAATTACATTTATCATCGTAATTTAAAAGAATTTTGCAAATTCTCTCATGTAATATTATAAATTTTCCACTTTGACCGAACAATTCTGACGTTTAGGAATCTAAACCCTAAACTAAGTAAAACGAAAATGAGCAAAATAATAATAATAATAATAATATTCAATGCACAAATTAATTTTCCCACATGGGTATTAAGCTTCAATATATAAAGAGAACTACTCCTCACAGCTCTATCCAAAGCAAATAGAAAGAAGAAAAAAGAAGAAAAAAAAAGGTGAAAAAAAACGGAAAGGAGTTGGGAGATGGCGAGGAAAAGCAAAACGTACCATCCAAGGGCTAAACTATCAAGAGATCAGCTACTTATAATCTTCAGAAACCATGACAGCGACAAGGACGGCCGCCTGAACACCACGGAGCTCACCGAAGCCTTCCGGTTTATCGGCGCCCTTCTGCCGCCTTATAGAGCTCGCCTTGCTCTTCTTTATGCTGATTCCGACAGAGACGGATTCATCGGCGAGAAGGATTTCGAATTACTTGTCAATTATGCCGAGCAACGCAAATACACTGTCATTTGAAAGAAAATCATGTATAATCTTAGATCTAACTGCTTATTGTAACTGTCTTCTAATAAAGGGATACTTTTTTTATTGTGAACTTGTAACACGCCCAGCTAATGTCCTATTTATTGAATTCGAATATTTTTACACATA

mRNA sequence

TAAAAGGGGATGTCCTTTCAACGCCGAGAATCTCGGAAACCTACTTGTCAGAAGAGTATTTTCCAAAACTCTTGAGATGCCTCCCCTCTATCCAAAGCAAATAGAAAGAAGAAAAAAGAAGAAAAAAAAAGGTGAAAAAAAACGGAAAGGAGTTGGGAGATGGCGAGGAAAAGCAAAACGTACCATCCAAGGGCTAAACTATCAAGAGATCAGCTACTTATAATCTTCAGAAACCATGACAGCGACAAGGACGGCCGCCTGAACACCACGGAGCTCACCGAAGCCTTCCGGTTTATCGGCGCCCTTCTGCCGCCTTATAGAGCTCGCCTTGCTCTTCTTTATGCTGATTCCGACAGAGACGGATTCATCGGCGAGAAGGATTTCGAATTACTTGTCAATTATGCCGAGCAACGCAAATACACTGTCATTTGAAAGAAAATCATGTATAATCTTAGATCTAACTGCTTATTGTAACTGTCTTCTAATAAAGGGATACTTTTTTTATTGTGAACTTGTAACACGCCCAGCTAATGTCCTATTTATTGAATTCGAATATTTTTACACATA

Coding sequence (CDS)

ATGGCGAGGAAAAGCAAAACGTACCATCCAAGGGCTAAACTATCAAGAGATCAGCTACTTATAATCTTCAGAAACCATGACAGCGACAAGGACGGCCGCCTGAACACCACGGAGCTCACCGAAGCCTTCCGGTTTATCGGCGCCCTTCTGCCGCCTTATAGAGCTCGCCTTGCTCTTCTTTATGCTGATTCCGACAGAGACGGATTCATCGGCGAGAAGGATTTCGAATTACTTGTCAATTATGCCGAGCAACGCAAATACACTGTCATTTGA

Protein sequence

MARKSKTYHPRAKLSRDQLLIIFRNHDSDKDGRLNTTELTEAFRFIGALLPPYRARLALLYADSDRDGFIGEKDFELLVNYAEQRKYTVI

Homology

[Close]

BLAST of Bhi09G002739 vs. TAIR 10
Match: AT3G50770.1 (calmodulin-like 41 )

HSP 1 Score: 44.7 bits (104), Expect = 4.7e-05
Identity = 21/61 (34.43%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 15  SRDQLLIIFRNHDSDKDGRLNTTELTEAFRFIGALLPPYRARLALLYADSDRDGFIGEKD 74
           S+++L  +F + DSD DG+++  EL   F  +G  +    A+ A+   D+D DG +G +D
Sbjct: 61  SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFED 120

Query: 75  F 76
           F
Sbjct: 121 F 121

[Close]

BLAST of Bhi09G002739 vs. ExPASy Swiss-Prot
Match: Q8L3R2 (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 PE=2 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 6.6e-04
Identity = 21/61 (34.43%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 15  SRDQLLIIFRNHDSDKDGRLNTTELTEAFRFIGALLPPYRARLALLYADSDRDGFIGEKD 74
           S+++L  +F + DSD DG+++  EL   F  +G  +    A+ A+   D+D DG +G +D
Sbjct: 61  SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFED 120

Query: 75  F 76
           F
Sbjct: 121 F 121

[Close]

BLAST of Bhi09G002739 vs. ExPASy TrEMBL
Match: A0A5A7VDB9 (Putative calcium-binding protein CML27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003480 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.7e-37
Identity = 77/90 (85.56%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MARKSKTYHPRAKLSRDQLLIIFRNHDSDKDGRLNTTELTEAFRFIGALLPPYRARLALL 60
          M+R+SKTYHPRA+LSR+QLL+IFRNHDSDKDGRL+TTELTEAFR+IGA LPPYRAR AL 
Sbjct: 1  MSRRSKTYHPRARLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPPYRARHALF 60

Query: 61 YADSDRDGFIGEKDFELLVNYAEQRKYTVI 91
          +ADSDRDGFI EKDFELLVNYAEQR+YTVI
Sbjct: 61 HADSDRDGFISEKDFELLVNYAEQRQYTVI 90

[Close]

BLAST of Bhi09G002739 vs. ExPASy TrEMBL
Match: A0A0A0KZR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639730 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.7e-36
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1  MARKSKTYHPRAKLSRDQLLIIFRNHDSDKDGRLNTTELTEAFRFIGALLPPYRARLALL 60
          M+RKSK Y+PRAKLSR+QLL+IFRNHDSDKDGRL+TTELTEAFR+IGA LP YRAR ALL
Sbjct: 1  MSRKSKNYYPRAKLSREQLLLIFRNHDSDKDGRLSTTELTEAFRYIGAFLPTYRARHALL 60

Query: 61 YADSDRDGFIGEKDFELLVNYAEQRKYTVI 91
          +ADSDRDGFIGEKDFE LVNYAEQR+YT+I
Sbjct: 61 HADSDRDGFIGEKDFESLVNYAEQRQYTII 90

[Close]

BLAST of Bhi09G002739 vs. ExPASy TrEMBL
Match: A0A5N6RQV2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018544 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.0e-12
Identity = 38/75 (50.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 15 SRDQLLIIFRNHDSDKDGRLNTTELTEAFRFIGALLPPYRARLALLYADSDRDGFIGEKD 74
          +RDQL+ IFR+HD D DG+L+  E+  AF ++G+    YRA LALL+ADSD DG++GE++
Sbjct: 16 TRDQLMNIFRSHDLDGDGKLSRKEVKAAFGYLGSRWDSYRAVLALLHADSDHDGYVGEEE 75

Query: 75 FELLVNYAEQRKYTV 90
           + LV+YA +  YT+
Sbjct: 76 LKKLVDYALKCGYTI 90

[Close]

BLAST of Bhi09G002739 vs. ExPASy TrEMBL
Match: A0A6J1JZF1 (calmodulin-2/4-like OS=Cucurbita maxima OX=3661 GN=LOC111490224 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.4e-12
Identity = 38/83 (45.78%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 5   SKTYHPRA---KLSRDQLLIIFRNHDSDKDGRLNTTELTEAFRFIGALLPPYRARLALLY 64
           S   HP+    + SR+Q+  IFR HDSDKDG LN  ELT+AF F+G+++P  +A   + Y
Sbjct: 65  SSNTHPKTSKLQFSREQMKEIFRYHDSDKDGFLNIRELTKAFAFLGSIIPFEKASYGMSY 124

Query: 65  ADSDRDGFIGEKDFELLVNYAEQ 85
           AD+++DG IGE + + L++YA++
Sbjct: 125 ADANKDGLIGEAELDKLIDYAQK 147

[Close]

BLAST of Bhi09G002739 vs. ExPASy TrEMBL
Match: A0A6J1KUW2 (calmodulin-like OS=Cucurbita maxima OX=3661 GN=LOC111496626 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.8e-12
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 13  KLSRDQLLIIFRNHDSDKDGRLNTTELTEAFRFIGALLPPYRARLALLYADSDRDGFIGE 72
           KLSR Q+  IF  HD D DG L+ +ELT+AF F G+++P Y+A   L YAD+D DG I E
Sbjct: 84  KLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSIIPLYKAHYGLAYADADGDGLISE 143

Query: 73  KDFELLVNYAEQ 85
           ++ E LV+YAE+
Sbjct: 144 EELEKLVDYAER 155

The following BLAST results are available for this feature:

BLAST of Bhi09G002739 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G50770.1	4.7e-05	34.43	calmodulin-like 41	[more]

BLAST of Bhi09G002739 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L3R2	6.6e-04	34.43	Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 ...	[more]

BLAST of Bhi09G002739 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDB9	4.7e-37	85.56	Putative calcium-binding protein CML27 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KZR6	6.7e-36	84.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639730 PE=4 SV=1	[more]
A0A5N6RQV2	1.0e-12	50.67	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_018544 PE=4 SV=1	[more]
A0A6J1JZF1	1.4e-12	45.78	calmodulin-2/4-like OS=Cucurbita maxima OX=3661 GN=LOC111490224 PE=4 SV=1	[more]
A0A6J1KUW2	1.8e-12	52.78	calmodulin-like OS=Cucurbita maxima OX=3661 GN=LOC111496626 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 17..76 e-value: 7.5E-8 score: 32.7
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 14..49 score: 11.807551
None	No IPR available	GENE3D	1.10.238.10		coord: 1..86 e-value: 6.4E-9 score: 38.0
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 27..39
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 63..75
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 16..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M002739	Bhi09M002739	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding