Bhi09G001700 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G001700
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	DExH-box ATP-dependent RNA helicase DExH12-like
Location	chr9: 56073393 .. 56074211 (+)
RNA-Seq Expression	Bhi09G001700
Synteny	Bhi09G001700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACGGAATCATCAGAAAGGACAGGATAACATATTTTGTGCTGTCTATATTGCCTCGATAGAAGCTCTTGCCAAAGAAAGTTTCAGGGACTGGGATAAGAAGTTTGGAAAGGGACTTGGGATCCATGTTGTTGAGTTAACAGGGGAAACAATTACAGATTTGAAACTTCTTGAGAAAGGTCAAATAATCATTAGTACCGCAGAGAAATGGGATGCTCTATCTCGTCGTTGGAAGCAGCACAAACATGTTCAACAGGTCAGTCTTTTTATTATTGATGAGCTTCACTTGATTGGAGGTCAAGGTGGTTCTGTATTGGAGGTGATTGTGTCTAGGATGAGATATATTGCAAGTCAGATTGAGAACAAGATTCGAATTCTGGCGTTTTCTACTTCTCTTGCAAATGTAAAAGATATCGGGGATTGGATAGGTGCTACTTCGCATGGTCTCTTCAATTTTGCACCTGGTGTTCGTCCTGTGCCTTTGGAAATTCATATTCAGGTGGTGGATATTGCTAATTTTGAATCTAGAATGCAGGCAATGACAAAGCCAACATACACCGCCATTGTTCAGCATGCAAAGAATGGAAAGCCAGCACTTGTCTTTGTTCCCACAAGAAAGCATGTCAGACTGGCAGCAGTAGATATAATGACATACTCAAGAGCAGACAATGGAGAGAAACTGCCATTTTTGCTAAGATCTCTTGAAGACATTGAACCCTTTGTTGACAAGATTCATGATGAGATGCTAAAGCCCTTTTACGTCATGGAGTTGGCTATTTACACGAGGGATTGTGTAGCTTGGATCAAGAAGTTGTGA

mRNA sequence

ATGTTACGGAATCATCAGAAAGGACAGGATAACATATTTTGTGCTGTCTATATTGCCTCGATAGAAGCTCTTGCCAAAGAAAGTTTCAGGGACTGGGATAAGAAGTTTGGAAAGGGACTTGGGATCCATGTTGTTGAGTTAACAGGGGAAACAATTACAGATTTGAAACTTCTTGAGAAAGGTCAAATAATCATTAGTACCGCAGAGAAATGGGATGCTCTATCTCGTCGTTGGAAGCAGCACAAACATGTTCAACAGGTCAGTCTTTTTATTATTGATGAGCTTCACTTGATTGGAGGTCAAGGTGGTTCTGTATTGGAGGTGATTGTGTCTAGGATGAGATATATTGCAAGTCAGATTGAGAACAAGATTCGAATTCTGGCGTTTTCTACTTCTCTTGCAAATGTAAAAGATATCGGGGATTGGATAGGTGCTACTTCGCATGGTCTCTTCAATTTTGCACCTGGTGTTCGTCCTGTGCCTTTGGAAATTCATATTCAGGTGGTGGATATTGCTAATTTTGAATCTAGAATGCAGGCAATGACAAAGCCAACATACACCGCCATTGTTCAGCATGCAAAGAATGGAAAGCCAGCACTTGTCTTTGTTCCCACAAGAAAGCATGTCAGACTGGCAGCAGTAGATATAATGACATACTCAAGAGCAGACAATGGAGAGAAACTGCCATTTTTGCTAAGATCTCTTGAAGACATTGAACCCTTTGTTGACAAGATTCATGATGAGATGCTAAAGCCCTTTTACGTCATGGAGTTGGCTATTTACACGAGGGATTGTGTAGCTTGGATCAAGAAGTTGTGA

Coding sequence (CDS)

ATGTTACGGAATCATCAGAAAGGACAGGATAACATATTTTGTGCTGTCTATATTGCCTCGATAGAAGCTCTTGCCAAAGAAAGTTTCAGGGACTGGGATAAGAAGTTTGGAAAGGGACTTGGGATCCATGTTGTTGAGTTAACAGGGGAAACAATTACAGATTTGAAACTTCTTGAGAAAGGTCAAATAATCATTAGTACCGCAGAGAAATGGGATGCTCTATCTCGTCGTTGGAAGCAGCACAAACATGTTCAACAGGTCAGTCTTTTTATTATTGATGAGCTTCACTTGATTGGAGGTCAAGGTGGTTCTGTATTGGAGGTGATTGTGTCTAGGATGAGATATATTGCAAGTCAGATTGAGAACAAGATTCGAATTCTGGCGTTTTCTACTTCTCTTGCAAATGTAAAAGATATCGGGGATTGGATAGGTGCTACTTCGCATGGTCTCTTCAATTTTGCACCTGGTGTTCGTCCTGTGCCTTTGGAAATTCATATTCAGGTGGTGGATATTGCTAATTTTGAATCTAGAATGCAGGCAATGACAAAGCCAACATACACCGCCATTGTTCAGCATGCAAAGAATGGAAAGCCAGCACTTGTCTTTGTTCCCACAAGAAAGCATGTCAGACTGGCAGCAGTAGATATAATGACATACTCAAGAGCAGACAATGGAGAGAAACTGCCATTTTTGCTAAGATCTCTTGAAGACATTGAACCCTTTGTTGACAAGATTCATGATGAGATGCTAAAGCCCTTTTACGTCATGGAGTTGGCTATTTACACGAGGGATTGTGTAGCTTGGATCAAGAAGTTGTGA

Protein sequence

MLRNHQKGQDNIFCAVYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEKGQIIISTAEKWDALSRRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQIENKIRILAFSTSLANVKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQAMTKPTYTAIVQHAKNGKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEPFVDKIHDEMLKPFYVMELAIYTRDCVAWIKKL

Homology

[Close]

BLAST of Bhi09G001700 vs. TAIR 10
Match: AT1G20960.1 (U5 small nuclear ribonucleoprotein helicase, putative )

HSP 1 Score: 387.9 bits (995), Expect = 6.8e-108
Identity = 189/251 (75.30%), Postives = 215/251 (85.66%), Query Frame = 0


Query: 1    MLRNHQKGQDNIFCAVYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEK 60
            +LRNH +G D     VYIA +EA+AKE FR W+ KFGKGLG+ VVELTGET  DLKLLEK
Sbjct: 1387 ILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEK 1446

Query: 61   GQIIISTAEKWDALSRRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQI 120
            GQIIIST EKWDALSRRWKQ K+VQQVSLFI+DELHLIGGQ G VLEVIVSRMRYI+SQ+
Sbjct: 1447 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVIVSRMRYISSQV 1506

Query: 121  ENKIRILAFSTSLANVKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQA 180
             NKIRI+A STSLAN KD+G+WIGA+SHGLFNF PGVRPVPLEIHIQ VDI++FE+RMQA
Sbjct: 1507 INKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSFEARMQA 1566

Query: 181  MTKPTYTAIVQHAKNGKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEP 240
            MTKPTYTAIVQHAKN KPA+VFVPTRKHVRL AVD+M YS  DN +   FLL  LE+++P
Sbjct: 1567 MTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLGKLEELDP 1626

Query: 241  FVDKIHDEMLK 252
            FV++I +E LK
Sbjct: 1627 FVEQIREETLK 1637

[Close]

BLAST of Bhi09G001700 vs. TAIR 10
Match: AT1G20960.2 (U5 small nuclear ribonucleoprotein helicase, putative )

HSP 1 Score: 387.9 bits (995), Expect = 6.8e-108
Identity = 189/251 (75.30%), Postives = 215/251 (85.66%), Query Frame = 0


Query: 1    MLRNHQKGQDNIFCAVYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEK 60
            +LRNH +G D     VYIA +EA+AKE FR W+ KFGKGLG+ VVELTGET  DLKLLEK
Sbjct: 1387 ILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEK 1446

Query: 61   GQIIISTAEKWDALSRRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQI 120
            GQIIIST EKWDALSRRWKQ K+VQQVSLFI+DELHLIGGQ G VLEVIVSRMRYI+SQ+
Sbjct: 1447 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVIVSRMRYISSQV 1506

Query: 121  ENKIRILAFSTSLANVKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQA 180
             NKIRI+A STSLAN KD+G+WIGA+SHGLFNF PGVRPVPLEIHIQ VDI++FE+RMQA
Sbjct: 1507 INKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSFEARMQA 1566

Query: 181  MTKPTYTAIVQHAKNGKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEP 240
            MTKPTYTAIVQHAKN KPA+VFVPTRKHVRL AVD+M YS  DN +   FLL  LE+++P
Sbjct: 1567 MTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLGKLEELDP 1626

Query: 241  FVDKIHDEMLK 252
            FV++I +E LK
Sbjct: 1627 FVEQIREETLK 1637

[Close]

BLAST of Bhi09G001700 vs. TAIR 10
Match: AT2G42270.1 (U5 small nuclear ribonucleoprotein helicase )

HSP 1 Score: 383.6 bits (984), Expect = 1.3e-106
Identity = 186/251 (74.10%), Postives = 216/251 (86.06%), Query Frame = 0


Query: 1    MLRNHQKGQDNIFCAVYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEK 60
            +LRNH +G D+    VYIA +EA+AKE FRDW+KKFGKGLG+ VVELTGET+ DLKLLEK
Sbjct: 1388 ILRNHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGETLLDLKLLEK 1447

Query: 61   GQIIISTAEKWDALSRRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQI 120
            GQIIIST EKWDALSRRWKQ K++QQVSLFI+DELHLIGGQGG VLEVIVSRMRYI+SQ+
Sbjct: 1448 GQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQVLEVIVSRMRYISSQV 1507

Query: 121  ENKIRILAFSTSLANVKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQA 180
             NKIRI+A STSLAN KD+G+WIGA+S G+FNF P VRPVPLEIHI  VDI +FE+RMQA
Sbjct: 1508 GNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPPNVRPVPLEIHIHGVDILSFEARMQA 1567

Query: 181  MTKPTYTAIVQHAKNGKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEP 240
            MTKPTYTAIVQHAKN KPA+VFVPTRKHVRL AVD++ YS  DN +   FLL +LE++EP
Sbjct: 1568 MTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLIAYSHMDNMKSPDFLLGNLEELEP 1627

Query: 241  FVDKIHDEMLK 252
            F+ +I +E LK
Sbjct: 1628 FLIQICEETLK 1638

[Close]

BLAST of Bhi09G001700 vs. TAIR 10
Match: AT5G61140.1 (U5 small nuclear ribonucleoprotein helicase )

HSP 1 Score: 214.9 bits (546), Expect = 7.9e-56
Identity = 107/236 (45.34%), Postives = 149/236 (63.14%), Query Frame = 0


Query: 16   VYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEKGQIIISTAEKWDALS 75
            VYIA ++A+ +E   DW K     LG  +VE+TG+   DL  L    IIIST EKWD +S
Sbjct: 1394 VYIAPLKAIVRERMNDWKKHLVAPLGKEMVEMTGDYTPDLVALLSADIIISTPEKWDGIS 1453

Query: 76   RRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQIENKIRILAFSTSLAN 135
            R W    +V++V L I+DE+HL+G   G +LEVIVSRMRYI+SQ E  +R +  ST+LAN
Sbjct: 1454 RNWHTRSYVKKVGLVILDEIHLLGADRGPILEVIVSRMRYISSQTERSVRFVGLSTALAN 1513

Query: 136  VKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQAMTKPTYTAIVQHAKN 195
              D+ DW+G    GLFNF P VRPVP+E+HIQ      +  RM +M KP Y AI  H+  
Sbjct: 1514 AGDLADWLGVGEIGLFNFKPSVRPVPIEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPT 1573

Query: 196  GKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEPFVDKIHDEMLK 252
             KP L+FV +R+  RL A+D++ ++ +D   +  FL  S ED++  + +I D+ L+
Sbjct: 1574 -KPVLIFVSSRRQTRLTALDLIQFAASDEHPR-QFLSVSEEDLQMVLSQITDQNLR 1627

[Close]

BLAST of Bhi09G001700 vs. TAIR 10
Match: AT5G61140.2 (U5 small nuclear ribonucleoprotein helicase )

HSP 1 Score: 214.9 bits (546), Expect = 7.9e-56
Identity = 107/236 (45.34%), Postives = 149/236 (63.14%), Query Frame = 0


Query: 16   VYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEKGQIIISTAEKWDALS 75
            VYIA ++A+ +E   DW K     LG  +VE+TG+   DL  L    IIIST EKWD +S
Sbjct: 1405 VYIAPLKAIVRERMNDWKKHLVAPLGKEMVEMTGDYTPDLVALLSADIIISTPEKWDGIS 1464

Query: 76   RRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQIENKIRILAFSTSLAN 135
            R W    +V++V L I+DE+HL+G   G +LEVIVSRMRYI+SQ E  +R +  ST+LAN
Sbjct: 1465 RNWHTRSYVKKVGLVILDEIHLLGADRGPILEVIVSRMRYISSQTERSVRFVGLSTALAN 1524

Query: 136  VKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQAMTKPTYTAIVQHAKN 195
              D+ DW+G    GLFNF P VRPVP+E+HIQ      +  RM +M KP Y AI  H+  
Sbjct: 1525 AGDLADWLGVGEIGLFNFKPSVRPVPIEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPT 1584

Query: 196  GKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEPFVDKIHDEMLK 252
             KP L+FV +R+  RL A+D++ ++ +D   +  FL  S ED++  + +I D+ L+
Sbjct: 1585 -KPVLIFVSSRRQTRLTALDLIQFAASDEHPR-QFLSVSEEDLQMVLSQITDQNLR 1638

[Close]

BLAST of Bhi09G001700 vs. ExPASy Swiss-Prot
Match: Q9SYP1 (DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana OX=3702 GN=BRR2A PE=1 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 9.5e-107
Identity = 189/251 (75.30%), Postives = 215/251 (85.66%), Query Frame = 0


Query: 1    MLRNHQKGQDNIFCAVYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEK 60
            +LRNH +G D     VYIA +EA+AKE FR W+ KFGKGLG+ VVELTGET  DLKLLEK
Sbjct: 1387 ILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEK 1446

Query: 61   GQIIISTAEKWDALSRRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQI 120
            GQIIIST EKWDALSRRWKQ K+VQQVSLFI+DELHLIGGQ G VLEVIVSRMRYI+SQ+
Sbjct: 1447 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVIVSRMRYISSQV 1506

Query: 121  ENKIRILAFSTSLANVKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQA 180
             NKIRI+A STSLAN KD+G+WIGA+SHGLFNF PGVRPVPLEIHIQ VDI++FE+RMQA
Sbjct: 1507 INKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSFEARMQA 1566

Query: 181  MTKPTYTAIVQHAKNGKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEP 240
            MTKPTYTAIVQHAKN KPA+VFVPTRKHVRL AVD+M YS  DN +   FLL  LE+++P
Sbjct: 1567 MTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPDFLLGKLEELDP 1626

Query: 241  FVDKIHDEMLK 252
            FV++I +E LK
Sbjct: 1627 FVEQIREETLK 1637

[Close]

BLAST of Bhi09G001700 vs. ExPASy Swiss-Prot
Match: O48534 (DExH-box ATP-dependent RNA helicase DExH13 OS=Arabidopsis thaliana OX=3702 GN=BRR2B PE=2 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.8e-105
Identity = 186/251 (74.10%), Postives = 216/251 (86.06%), Query Frame = 0


Query: 1    MLRNHQKGQDNIFCAVYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEK 60
            +LRNH +G D+    VYIA +EA+AKE FRDW+KKFGKGLG+ VVELTGET+ DLKLLEK
Sbjct: 1388 ILRNHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGETLLDLKLLEK 1447

Query: 61   GQIIISTAEKWDALSRRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQI 120
            GQIIIST EKWDALSRRWKQ K++QQVSLFI+DELHLIGGQGG VLEVIVSRMRYI+SQ+
Sbjct: 1448 GQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQVLEVIVSRMRYISSQV 1507

Query: 121  ENKIRILAFSTSLANVKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQA 180
             NKIRI+A STSLAN KD+G+WIGA+S G+FNF P VRPVPLEIHI  VDI +FE+RMQA
Sbjct: 1508 GNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPPNVRPVPLEIHIHGVDILSFEARMQA 1567

Query: 181  MTKPTYTAIVQHAKNGKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEP 240
            MTKPTYTAIVQHAKN KPA+VFVPTRKHVRL AVD++ YS  DN +   FLL +LE++EP
Sbjct: 1568 MTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLIAYSHMDNMKSPDFLLGNLEELEP 1627

Query: 241  FVDKIHDEMLK 252
            F+ +I +E LK
Sbjct: 1628 FLIQICEETLK 1638

[Close]

BLAST of Bhi09G001700 vs. ExPASy Swiss-Prot
Match: O75643 (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2)

HSP 1 Score: 260.0 bits (663), Expect = 3.0e-68
Identity = 130/236 (55.08%), Postives = 173/236 (73.31%), Query Frame = 0


Query: 16   VYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEKGQIIISTAEKWDALS 75
            VYI  +EALA++ + DW +KF   L   VV LTGET TDLKLL KG IIIST EKWD LS
Sbjct: 1377 VYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILS 1436

Query: 76   RRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQIENKIRILAFSTSLAN 135
            RRWKQ K+VQ ++LF++DE+HLIGG+ G VLEVI SRMRYI+SQIE  IRI+A S+SL+N
Sbjct: 1437 RRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN 1496

Query: 136  VKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQAMTKPTYTAIVQHAKN 195
             KD+  W+G ++   FNF P VRPVPLE+HIQ  +I++ ++R+ +M KP Y AI +H+  
Sbjct: 1497 AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPK 1556

Query: 196  GKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEPFVDKIHDEMLK 252
             KP +VFVP+RK  RL A+DI+T   AD  ++  FL  + +D+ P+++K+ D  LK
Sbjct: 1557 -KPVIVFVPSRKQTRLTAIDILTTCAADI-QRQRFLHCTEKDLIPYLEKLSDSTLK 1610

[Close]

BLAST of Bhi09G001700 vs. ExPASy Swiss-Prot
Match: Q6P4T2 (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.0e-68
Identity = 130/236 (55.08%), Postives = 173/236 (73.31%), Query Frame = 0


Query: 16   VYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEKGQIIISTAEKWDALS 75
            VYI  +EALA++ + DW +KF   L   VV LTGET TDLKLL KG IIIST EKWD LS
Sbjct: 1377 VYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILS 1436

Query: 76   RRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQIENKIRILAFSTSLAN 135
            RRWKQ K+VQ ++LF++DE+HLIGG+ G VLEVI SRMRYI+SQIE  IRI+A S+SL+N
Sbjct: 1437 RRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN 1496

Query: 136  VKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQAMTKPTYTAIVQHAKN 195
             KD+  W+G ++   FNF P VRPVPLE+HIQ  +I++ ++R+ +M KP Y AI +H+  
Sbjct: 1497 AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPK 1556

Query: 196  GKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEPFVDKIHDEMLK 252
             KP +VFVP+RK  RL A+DI+T   AD  ++  FL  + +D+ P+++K+ D  LK
Sbjct: 1557 -KPVIVFVPSRKQTRLTAIDILTTCAADI-QRQRFLHCTEKDLIPYLEKLSDSTLK 1610

[Close]

BLAST of Bhi09G001700 vs. ExPASy Swiss-Prot
Match: F1LNJ2 (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.0e-68
Identity = 130/236 (55.08%), Postives = 173/236 (73.31%), Query Frame = 0


Query: 16   VYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEKGQIIISTAEKWDALS 75
            VYI  +EALA++ + DW +KF   L   VV LTGET TDLKLL KG IIIST EKWD LS
Sbjct: 1380 VYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILS 1439

Query: 76   RRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQIENKIRILAFSTSLAN 135
            RRWKQ K+VQ ++LF++DE+HLIGG+ G VLEVI SRMRYI+SQIE  IRI+A S+SL+N
Sbjct: 1440 RRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN 1499

Query: 136  VKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQAMTKPTYTAIVQHAKN 195
             KD+  W+G ++   FNF P VRPVPLE+HIQ  +I++ ++R+ +M KP Y AI +H+  
Sbjct: 1500 AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPK 1559

Query: 196  GKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEPFVDKIHDEMLK 252
             KP +VFVP+RK  RL A+DI+T   AD  ++  FL  + +D+ P+++K+ D  LK
Sbjct: 1560 -KPVIVFVPSRKQTRLTAIDILTTCAADI-QRQRFLHCTEKDLIPYLEKLSDSTLK 1613

[Close]

BLAST of Bhi09G001700 vs. ExPASy TrEMBL
Match: A0A6J1J3P2 (DExH-box ATP-dependent RNA helicase DExH12-like OS=Cucurbita maxima OX=3661 GN=LOC111480994 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 6.6e-127
Identity = 230/251 (91.63%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1    MLRNHQKGQDNIFCAVYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEK 60
            +LRNHQKGQDN+  AVYIA IEALAKE +RDW+KKFGKGLGI VVELTGET TDLKLLEK
Sbjct: 1394 ILRNHQKGQDNMLRAVYIAPIEALAKERYRDWEKKFGKGLGIRVVELTGETATDLKLLEK 1453

Query: 61   GQIIISTAEKWDALSRRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQI 120
            GQIIIST EKWDALSRRWKQ KHVQQVSLFIIDELHLIGGQGG VLEVIVSRMRYIASQI
Sbjct: 1454 GQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQI 1513

Query: 121  ENKIRILAFSTSLANVKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQA 180
            ENKIRI+A STSLAN KDIGDWIGATSHGLFNF PGVRPVPLEIHIQ VDIANFE+RMQA
Sbjct: 1514 ENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFEARMQA 1573

Query: 181  MTKPTYTAIVQHAKNGKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEP 240
            MTKPTYTAIVQHAKNGKPALVFVPTRKHVRL AVDIMTYS ADNGEKLPFLLRSLEDIEP
Sbjct: 1574 MTKPTYTAIVQHAKNGKPALVFVPTRKHVRLTAVDIMTYSSADNGEKLPFLLRSLEDIEP 1633

Query: 241  FVDKIHDEMLK 252
            FVDKIHDEMLK
Sbjct: 1634 FVDKIHDEMLK 1644

[Close]

BLAST of Bhi09G001700 vs. ExPASy TrEMBL
Match: A0A6J1FM64 (DExH-box ATP-dependent RNA helicase DExH12-like OS=Cucurbita moschata OX=3662 GN=LOC111446476 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 6.6e-127
Identity = 230/251 (91.63%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1    MLRNHQKGQDNIFCAVYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEK 60
            +LRNHQKGQDN+  AVYIA IEALAKE +RDW+KKFGKGLGI VVELTGET TDLKLLEK
Sbjct: 1394 ILRNHQKGQDNMLRAVYIAPIEALAKERYRDWEKKFGKGLGIRVVELTGETATDLKLLEK 1453

Query: 61   GQIIISTAEKWDALSRRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQI 120
            GQIIIST EKWDALSRRWKQ KHVQQVSLFIIDELHLIGGQGG VLEVIVSRMRYIASQI
Sbjct: 1454 GQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQI 1513

Query: 121  ENKIRILAFSTSLANVKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQA 180
            ENKIRI+A STSLAN KDIGDWIGATSHGLFNF PGVRPVPLEIHIQ VDIANFE+RMQA
Sbjct: 1514 ENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFEARMQA 1573

Query: 181  MTKPTYTAIVQHAKNGKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEP 240
            MTKPTYTAIVQHAKNGKPALVFVPTRKHVRL AVDIMTYS ADNGEKLPFLLRSLEDIEP
Sbjct: 1574 MTKPTYTAIVQHAKNGKPALVFVPTRKHVRLTAVDIMTYSSADNGEKLPFLLRSLEDIEP 1633

Query: 241  FVDKIHDEMLK 252
            FVDKIHDEMLK
Sbjct: 1634 FVDKIHDEMLK 1644

[Close]

BLAST of Bhi09G001700 vs. ExPASy TrEMBL
Match: A0A6J1DTU4 (DExH-box ATP-dependent RNA helicase DExH12 OS=Momordica charantia OX=3673 GN=LOC111023923 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 5.6e-126
Identity = 227/251 (90.44%), Postives = 235/251 (93.63%), Query Frame = 0


Query: 1    MLRNHQKGQDNIFCAVYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEK 60
            +LRNHQKGQDNI  AVYIA IEALAKE +RDWDKKFGKGLGI VVELTGET TDLKLLEK
Sbjct: 1393 ILRNHQKGQDNILRAVYIAPIEALAKERYRDWDKKFGKGLGIRVVELTGETATDLKLLEK 1452

Query: 61   GQIIISTAEKWDALSRRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQI 120
            GQIIIST EKWDALSRRWKQ KHVQQVSLFIIDELHLIGGQGG VLEVIVSRMRYIASQI
Sbjct: 1453 GQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQI 1512

Query: 121  ENKIRILAFSTSLANVKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQA 180
            ENKIRI+A STSLAN KDIGDWIGATSHGLFNF PGVRPVPLEIHIQ VDIANFE+RMQA
Sbjct: 1513 ENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFEARMQA 1572

Query: 181  MTKPTYTAIVQHAKNGKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEP 240
            MTKPTYTA+VQHA+NGKPALVFVPTRKHVRL AVDIMTYS  DNGEKLPFLLRS+E+IEP
Sbjct: 1573 MTKPTYTAVVQHARNGKPALVFVPTRKHVRLTAVDIMTYSSVDNGEKLPFLLRSVEEIEP 1632

Query: 241  FVDKIHDEMLK 252
            FVDKIHDEMLK
Sbjct: 1633 FVDKIHDEMLK 1643

[Close]

BLAST of Bhi09G001700 vs. ExPASy TrEMBL
Match: A0A5A7UD98 (DExH-box ATP-dependent RNA helicase DExH12-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1589G00470 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.6e-125
Identity = 227/251 (90.44%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1    MLRNHQKGQDNIFCAVYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEK 60
            +LRN+QKGQDN+  AVYIA IEALAKE FRDWDKKFGKGLGI VVELTGET TDLKLLE+
Sbjct: 1392 ILRNYQKGQDNVLRAVYIAHIEALAKERFRDWDKKFGKGLGIRVVELTGETATDLKLLER 1451

Query: 61   GQIIISTAEKWDALSRRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQI 120
            GQIIIST EKWDALSRRWKQ K+VQQVSLFIIDELHLIGGQGG VLEVIVSRMRYIASQI
Sbjct: 1452 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQI 1511

Query: 121  ENKIRILAFSTSLANVKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQA 180
            ENKIRI+A STSLAN KDIGDWIGATSHGLFNF PGVRPVPLEIHIQ VDIANFE+RMQA
Sbjct: 1512 ENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFEARMQA 1571

Query: 181  MTKPTYTAIVQHAKNGKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEP 240
            MTKPTYTAIVQHAKNGKPA+VFVPTRKHVRL AVDIMTYS ADNGEKLPFLLRSLEDIEP
Sbjct: 1572 MTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDIMTYSSADNGEKLPFLLRSLEDIEP 1631

Query: 241  FVDKIHDEMLK 252
            FVDKI+DEMLK
Sbjct: 1632 FVDKINDEMLK 1642

[Close]

BLAST of Bhi09G001700 vs. ExPASy TrEMBL
Match: A0A0A0L839 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G168950 PE=4 SV=1)

HSP 1 Score: 455.3 bits (1170), Expect = 1.8e-124
Identity = 225/251 (89.64%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1    MLRNHQKGQDNIFCAVYIASIEALAKESFRDWDKKFGKGLGIHVVELTGETITDLKLLEK 60
            +LRN+QKGQDN+  AVYIA IE+LAKE +RDWDKKFGKGLGI VVELTGET TDLKLLE+
Sbjct: 1392 ILRNYQKGQDNVLRAVYIAPIESLAKERYRDWDKKFGKGLGIRVVELTGETATDLKLLER 1451

Query: 61   GQIIISTAEKWDALSRRWKQHKHVQQVSLFIIDELHLIGGQGGSVLEVIVSRMRYIASQI 120
            GQIIIST EKWDALSRRWKQ K+VQQVSLFIIDELHLIGGQGG VLEVIVSRMRYIASQI
Sbjct: 1452 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQI 1511

Query: 121  ENKIRILAFSTSLANVKDIGDWIGATSHGLFNFAPGVRPVPLEIHIQVVDIANFESRMQA 180
            ENKIRI+A STSLAN KDIGDWIGATSHGLFNF PGVRPVPLEIHIQ VDIANFE+RMQA
Sbjct: 1512 ENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFEARMQA 1571

Query: 181  MTKPTYTAIVQHAKNGKPALVFVPTRKHVRLAAVDIMTYSRADNGEKLPFLLRSLEDIEP 240
            MTKPTYTAIVQHAKNGKPA+VFVPTRKHVRL AVDIMTYS ADNGEKLPFLLRSLEDIEP
Sbjct: 1572 MTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDIMTYSSADNGEKLPFLLRSLEDIEP 1631

Query: 241  FVDKIHDEMLK 252
            FVDKI+DEMLK
Sbjct: 1632 FVDKINDEMLK 1642

The following BLAST results are available for this feature:

BLAST of Bhi09G001700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20960.1	6.8e-108	75.30	U5 small nuclear ribonucleoprotein helicase, putative	[more]
AT1G20960.2	6.8e-108	75.30	U5 small nuclear ribonucleoprotein helicase, putative	[more]
AT2G42270.1	1.3e-106	74.10	U5 small nuclear ribonucleoprotein helicase	[more]
AT5G61140.1	7.9e-56	45.34	U5 small nuclear ribonucleoprotein helicase	[more]
AT5G61140.2	7.9e-56	45.34	U5 small nuclear ribonucleoprotein helicase	[more]

BLAST of Bhi09G001700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYP1	9.5e-107	75.30	DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana OX=3702 GN=BR...	[more]
O48534	1.8e-105	74.10	DExH-box ATP-dependent RNA helicase DExH13 OS=Arabidopsis thaliana OX=3702 GN=BR...	[more]
O75643	3.0e-68	55.08	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens OX=9606 GN=S...	[more]
Q6P4T2	3.0e-68	55.08	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus OX=10090 GN=...	[more]
F1LNJ2	3.0e-68	55.08	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus OX=1011...	[more]

BLAST of Bhi09G001700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J3P2	6.6e-127	91.63	DExH-box ATP-dependent RNA helicase DExH12-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FM64	6.6e-127	91.63	DExH-box ATP-dependent RNA helicase DExH12-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1DTU4	5.6e-126	90.44	DExH-box ATP-dependent RNA helicase DExH12 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A5A7UD98	3.6e-125	90.44	DExH-box ATP-dependent RNA helicase DExH12-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A0A0L839	1.8e-124	89.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G168950 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..157 e-value: 6.9E-55 score: 187.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 158..270 e-value: 2.1E-18 score: 68.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 153..262
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 14..146
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 15..138 e-value: 8.6E-11 score: 41.9
None	No IPR available	PANTHER	PTHR24075	SEC63 DOMAIN-CONTAINING	coord: 2..251
None	No IPR available	PANTHER	PTHR24075:SF5	U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 200 KDA HELICASE	coord: 2..251
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 1..151 score: 13.099493

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M001700	Bhi09M001700	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0016740	transferase activity