Bhi09G001569 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G001569
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Ribosomal protein S1
Location	chr9: 51579989 .. 51580492 (-)
RNA-Seq Expression	Bhi09G001569
Synteny	Bhi09G001569

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTGGTGGATGCAGGACCTGGGACCCCCAGAATTTGTATGCAAGATGAGCCTACAGGAGTGCCAATCAACCGAGCCGCCAGGTTTGAGAATAAGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCAAATTTTGGAGAGATTCTTCATCGATCTAGTGGCCGGCGAATCACTGATCAAAGAGCGAGCTGCCGCCAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGGATGGTGAACCGCTTTTTCTTCTTCCACGAAGATTCAGACAAAACCGAGCTTTGATGGAACTGAACAAGATTTGGCCAACGAATACAAAAGTCAAAGGCTTTATTATTGAGAAAGTTAAAGGAGGTTATTCAGTAGCCATCGCGGGTTTCATTACTTTTCTTCCATTCAGTCCTCTCATAAGTCAAAGGATATCGAATGATCGATTCATCATTGAGAGCATTAACCCCAAAAGAACGAATATTGTGGTGTTCTAA

mRNA sequence

ATGTTCTTGGTGGATGCAGGACCTGGGACCCCCAGAATTTGTATGCAAGATGAGCCTACAGGAGTGCCAATCAACCGAGCCGCCAGGTTTGAGAATAAGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCAAATTTTGGAGAGATTCTTCATCGATCTAGTGGCCGGCGAATCACTGATCAAAGAGCGAGCTGCCGCCAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGGATGGTGAACCGCTTTTTCTTCTTCCACGAAGATTCAGACAAAACCGAGCTTTGATGGAACTGAACAAGATTTGGCCAACGAATACAAAAGTCAAAGGCTTTATTATTGAGAAAGTTAAAGGAGGTTATTCAGTAGCCATCGCGGGTTTCATTACTTTTCTTCCATTCAGTCCTCTCATAAGTCAAAGGATATCGAATGATCGATTCATCATTGAGAGCATTAACCCCAAAAGAACGAATATTGTGGTGTTCTAA

Coding sequence (CDS)

ATGTTCTTGGTGGATGCAGGACCTGGGACCCCCAGAATTTGTATGCAAGATGAGCCTACAGGAGTGCCAATCAACCGAGCCGCCAGGTTTGAGAATAAGGTGGGATCCCTGGATCTAGTGGCCGGTGAATCACTGATCAAAGAGCAAATTTTGGAGAGATTCTTCATCGATCTAGTGGCCGGCGAATCACTGATCAAAGAGCGAGCTGCCGCCAGGTTTAATGATTTGGTGGGATCCACAGATGTAGTGGATGGTGAACCGCTTTTTCTTCTTCCACGAAGATTCAGACAAAACCGAGCTTTGATGGAACTGAACAAGATTTGGCCAACGAATACAAAAGTCAAAGGCTTTATTATTGAGAAAGTTAAAGGAGGTTATTCAGTAGCCATCGCGGGTTTCATTACTTTTCTTCCATTCAGTCCTCTCATAAGTCAAAGGATATCGAATGATCGATTCATCATTGAGAGCATTAACCCCAAAAGAACGAATATTGTGGTGTTCTAA

Protein sequence

MFLVDAGPGTPRICMQDEPTGVPINRAARFENKVGSLDLVAGESLIKEQILERFFIDLVAGESLIKERAAARFNDLVGSTDVVDGEPLFLLPRRFRQNRALMELNKIWPTNTKVKGFIIEKVKGGYSVAIAGFITFLPFSPLISQRISNDRFIIESINPKRTNIVVF

Homology

[Close]

BLAST of Bhi09G001569 vs. ExPASy Swiss-Prot
Match: P26863 (Ribosomal protein S1, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS1 PE=3 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-13
Identity = 61/173 (35.26%), Postives = 79/173 (45.66%), Query Frame = 0


Query: 3   LVDAGPGTPRICMQDEPTGVPINRAARFENKVGSLDLVAGESLIKEQILERFFIDLVAGE 62
           LVD G  TP IC Q E   VPI + ARF                                
Sbjct: 35  LVDTGLKTPIICFQHELKRVPITKQARFH------------------------------- 94

Query: 63  SLIKERAAARFNDLVGSTDV-VDGEPLFLLPR----RFRQNRALMELNKIWPTNTK-VKG 122
                          G  DV V GEP  LLP+    + ++    +EL KIW ++   VKG
Sbjct: 95  --------------FGIEDVEVFGEPKMLLPKPLEIKCKRKLVWIELTKIWRSDQNLVKG 154

Query: 123 FIIEKVKGGYSVAIAGFITFLPFSPLISQRISNDR---FIIESINPKRTNIVV 167
           FI+  VKGGY+VAIAG+I FLP S L S+++   +   F I ++ PK +NIVV
Sbjct: 155 FILNSVKGGYAVAIAGYIAFLPKSLLRSRKVFYSQWRIFSILNMKPKISNIVV 162

[Close]

BLAST of Bhi09G001569 vs. ExPASy TrEMBL
Match: A0A5C2I386 (Ribosomal protein S1 OS=Ilex pubescens OX=185543 GN=rps1 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 6.1e-83
Identity = 160/167 (95.81%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MFLVDAGPGTPRICMQDEPTGVPINRAARFENKVGSLDLVAGESLIKEQILERFFIDLVA 60
           MFLVDAGPGTPRICMQDEPTGVPINRA RFENKVGSLDLVAGESLIKEQILERFFIDLVA
Sbjct: 36  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKEQILERFFIDLVA 95

Query: 61  GESLIKERAAARFNDLVGSTDVVDGEPLFLLPRRFRQNRALMELNKIWPTNTKVKGFIIE 120
           GESLIKERAAARFNDLVGSTDVV GEPL LLPRRFRQNRA MELNKIW TNTKVKGFIIE
Sbjct: 96  GESLIKERAAARFNDLVGSTDVVAGEPLLLLPRRFRQNRAWMELNKIWRTNTKVKGFIIE 155

Query: 121 KVKGGYSVAIAGFITFLPFSPLISQRISNDRFIIESINPKRTNIVVF 168
           KVKGGYSVAIAGFITFLPF PLISQRISNDRF IESINPKRTNIVVF
Sbjct: 156 KVKGGYSVAIAGFITFLPFRPLISQRISNDRFTIESINPKRTNIVVF 202

[Close]

BLAST of Bhi09G001569 vs. ExPASy TrEMBL
Match: A0A6J1IHY3 (uncharacterized protein LOC111473236 OS=Cucurbita maxima OX=3661 GN=LOC111473236 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.4e-82
Identity = 159/167 (95.21%), Postives = 160/167 (95.81%), Query Frame = 0


Query: 1   MFLVDAGPGTPRICMQDEPTGVPINRAARFENKVGSLDLVAGESLIKEQILERFFIDLVA 60
           MFLVDAGPGTPRICMQDEPTGVPINRA RFENKVGSLDLVAGESLIKE ILERFFIDLVA
Sbjct: 36  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKEPILERFFIDLVA 95

Query: 61  GESLIKERAAARFNDLVGSTDVVDGEPLFLLPRRFRQNRALMELNKIWPTNTKVKGFIIE 120
           GESLIKERAAARFNDLVGSTDVV GEPLFLLPRRFRQNRA MELNKIW TNTKVKGFIIE
Sbjct: 96  GESLIKERAAARFNDLVGSTDVVAGEPLFLLPRRFRQNRAWMELNKIWQTNTKVKGFIIE 155

Query: 121 KVKGGYSVAIAGFITFLPFSPLISQRISNDRFIIESINPKRTNIVVF 168
           KVKGGYSVAIAGFITFLPF PLISQRISN+RF IESINPKRTNIVVF
Sbjct: 156 KVKGGYSVAIAGFITFLPFRPLISQRISNERFTIESINPKRTNIVVF 202

[Close]

BLAST of Bhi09G001569 vs. ExPASy TrEMBL
Match: A0A4D6FU87 (Ribosomal protein S1 OS=Actinidia chinensis OX=3625 GN=rps1 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.0e-82
Identity = 159/167 (95.21%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MFLVDAGPGTPRICMQDEPTGVPINRAARFENKVGSLDLVAGESLIKEQILERFFIDLVA 60
           MFLVDAGPGTPRICMQDEPTGVPINRA RFENKVGSLDLVAGESLIKEQILERFFIDLVA
Sbjct: 36  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKEQILERFFIDLVA 95

Query: 61  GESLIKERAAARFNDLVGSTDVVDGEPLFLLPRRFRQNRALMELNKIWPTNTKVKGFIIE 120
           GESLIKERAAARFNDLVGSTDVV GEPL LLPRRFRQNRA MELNKIW TNTKVKGFIIE
Sbjct: 96  GESLIKERAAARFNDLVGSTDVVAGEPLLLLPRRFRQNRAWMELNKIWRTNTKVKGFIIE 155

Query: 121 KVKGGYSVAIAGFITFLPFSPLISQRISNDRFIIESINPKRTNIVVF 168
           K KGGYSVAIAGFITFLPF PLISQRISNDRF IESINPKRTNIVVF
Sbjct: 156 KGKGGYSVAIAGFITFLPFRPLISQRISNDRFTIESINPKRTNIVVF 202

[Close]

BLAST of Bhi09G001569 vs. ExPASy TrEMBL
Match: A0A4D6J5C9 (Ribosomal protein S1 OS=Actinidia eriantha OX=165200 GN=rps1 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.0e-82
Identity = 159/167 (95.21%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MFLVDAGPGTPRICMQDEPTGVPINRAARFENKVGSLDLVAGESLIKEQILERFFIDLVA 60
           MFLVDAGPGTPRICMQDEPTGVPINRA RFENKVGSLDLVAGESLIKEQILERFFIDLVA
Sbjct: 36  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKEQILERFFIDLVA 95

Query: 61  GESLIKERAAARFNDLVGSTDVVDGEPLFLLPRRFRQNRALMELNKIWPTNTKVKGFIIE 120
           GESLIKERAAARFNDLVGSTDVV GEPL LLPRRFRQNRA MELNKIW TNTKVKGFIIE
Sbjct: 96  GESLIKERAAARFNDLVGSTDVVAGEPLLLLPRRFRQNRAWMELNKIWRTNTKVKGFIIE 155

Query: 121 KVKGGYSVAIAGFITFLPFSPLISQRISNDRFIIESINPKRTNIVVF 168
           K KGGYSVAIAGFITFLPF PLISQRISNDRF IESINPKRTNIVVF
Sbjct: 156 KGKGGYSVAIAGFITFLPFRPLISQRISNDRFTIESINPKRTNIVVF 202

[Close]

BLAST of Bhi09G001569 vs. ExPASy TrEMBL
Match: A0A4D6J9G9 (Ribosomal protein S1 OS=Actinidia arguta OX=64478 GN=rps1 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.0e-82
Identity = 159/167 (95.21%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MFLVDAGPGTPRICMQDEPTGVPINRAARFENKVGSLDLVAGESLIKEQILERFFIDLVA 60
           MFLVDAGPGTPRICMQDEPTGVPINRA RFENKVGSLDLVAGESLIKEQILERFFIDLVA
Sbjct: 36  MFLVDAGPGTPRICMQDEPTGVPINRATRFENKVGSLDLVAGESLIKEQILERFFIDLVA 95

Query: 61  GESLIKERAAARFNDLVGSTDVVDGEPLFLLPRRFRQNRALMELNKIWPTNTKVKGFIIE 120
           GESLIKERAAARFNDLVGSTDVV GEPL LLPRRFRQNRA MELNKIW TNTKVKGFIIE
Sbjct: 96  GESLIKERAAARFNDLVGSTDVVAGEPLLLLPRRFRQNRAWMELNKIWRTNTKVKGFIIE 155

Query: 121 KVKGGYSVAIAGFITFLPFSPLISQRISNDRFIIESINPKRTNIVVF 168
           K KGGYSVAIAGFITFLPF PLISQRISNDRF IESINPKRTNIVVF
Sbjct: 156 KGKGGYSVAIAGFITFLPFRPLISQRISNDRFTIESINPKRTNIVVF 202

The following BLAST results are available for this feature:

BLAST of Bhi09G001569 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G001569 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26863	2.9e-13	35.26	Ribosomal protein S1, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS1 PE=...	[more]

BLAST of Bhi09G001569 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C2I386	6.1e-83	95.81	Ribosomal protein S1 OS=Ilex pubescens OX=185543 GN=rps1 PE=4 SV=1	[more]
A0A6J1IHY3	1.4e-82	95.21	uncharacterized protein LOC111473236 OS=Cucurbita maxima OX=3661 GN=LOC111473236...	[more]
A0A4D6FU87	4.0e-82	95.21	Ribosomal protein S1 OS=Actinidia chinensis OX=3625 GN=rps1 PE=4 SV=1	[more]
A0A4D6J5C9	4.0e-82	95.21	Ribosomal protein S1 OS=Actinidia eriantha OX=165200 GN=rps1 PE=4 SV=1	[more]
A0A4D6J9G9	4.0e-82	95.21	Ribosomal protein S1 OS=Actinidia arguta OX=64478 GN=rps1 PE=4 SV=1	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M001569	Bhi09M001569	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome