Bhi09G001345 (gene) Wax gourd (B227) v1

Overview
NameBhi09G001345
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr9: 43076034 .. 43076325 (-)
RNA-Seq ExpressionBhi09G001345
SyntenyBhi09G001345
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAGGCATCGATGTAGTTACATATAATACCTTAATTTCTGGCCTGTGCAAAGCAAGGAAATTCGAGAACTCTTATGATCTTCTTACTGAAATAGAAGGGGAAAAATTAGGACCTGATAATTTTACATACAATGTGATTCTTGATGCTTTAACAAATGCTGGAAGGATTAAAGAGGCAGAGGAGTTTTTGTTGAAAATGGTTGAATCAGGAATATTGCATGATCATAATTTAAAATTGGACAAAAGGCAGAATGTGCTAACCTCTGAAATTTCAGAACACAATGATTCCAA

mRNA sequence

GGAAAGGCATCGATGTAGTTACATATAATACCTTAATTTCTGGCCTGTGCAAAGCAAGGAAATTCGAGAACTCTTATGATCTTCTTACTGAAATAGAAGGGGAAAAATTAGGACCTGATAATTTTACATACAATGTGATTCTTGATGCTTTAACAAATGCTGGAAGGATTAAAGAGGCAGAGGAGTTTTTGTTGAAAATGGTTGAATCAGGAATATTGCATGATCATAATTTAAAATTGGACAAAAGGCAGAATGTGCTAACCTCTGAAATTTCAGAACACAATGATTCCAA

Coding sequence (CDS)

GGAAAGGCATCGATGTAGTTACATATAATACCTTAATTTCTGGCCTGTGCAAAGCAAGGAAATTCGAGAACTCTTATGATCTTCTTACTGAAATAGAAGGGGAAAAATTAGGACCTGATAATTTTACATACAATGTGATTCTTGATGCTTTAACAAATGCTGGAAGGATTAAAGAGGCAGAGGAGTTTTTGTTGAAAATGGTTGAATCAGGAATATTGCATGATCATAATTTAAAATTGGACAAAAGGCAGAATGTGCTAACCTCTGAAATTTCAGAACACAATGATTCCAA

Protein sequence

KGIDVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAEEFLLKMVESGILHDHNLKLDKRQNVLTSEISEHNDS
Homology
[Close]
BLAST of Bhi09G001345 vs. TAIR 10
Match: AT2G16880.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-14
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 3   IDVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAEEF 62
           +D VTYNT+IS  CK +K + +YDLL+E+E + L PD FTYN  +  L   G++ E +E 
Sbjct: 623 VDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDEL 682

Query: 63  LLKMVESGILHDHNLKLDKRQNVLTSEISE 93
           L K          +L+++  +N  TSE  E
Sbjct: 683 LKKFSGKFGSMKRDLQVETEKNPATSESKE 712

[Close]
BLAST of Bhi09G001345 vs. TAIR 10
Match: AT1G63070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-11
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 0 

Query: 4   DVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAEEFL 63
           DVV YNT+I GLCK +  ++++DL  ++E + + PD FTYN ++  L N GR  +A   L
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLL 308

Query: 64  LKMVESGILHD 75
             M+E  I  D
Sbjct: 309 SDMLEKNINPD 319

[Close]
BLAST of Bhi09G001345 vs. TAIR 10
Match: AT5G16640.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-11
Identity = 28/70 (40.00%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 2   GIDVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAEE 61
           G DVVTYN+LISGLC + ++ ++  +++ +   ++ PD FT+N ++DA    GR+ EAEE
Sbjct: 218 GPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEE 277

Query: 62  FLLKMVESGI 72
           F  +M+   +
Sbjct: 278 FYEEMIRRSL 287

[Close]
BLAST of Bhi09G001345 vs. TAIR 10
Match: AT5G24830.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.6e-11
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 4   DVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAEEFL 63
           DV TYNTLIS LCK  KF+ + DL   ++   + PD  +Y VI+  L   G +  A EFL
Sbjct: 334 DVFTYNTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQGLCIHGDVNRANEFL 393

Query: 64  LKMVESGIL 73
           L M++S +L
Sbjct: 394 LSMLKSSLL 402

[Close]
BLAST of Bhi09G001345 vs. TAIR 10
Match: AT1G64580.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.0e-10
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 0 

Query: 4   DVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAEEFL 63
           DVVTYNTLI+G CK+++ E+   L  E+  + L  D FTYN ++     AG++  A++  
Sbjct: 323 DVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVF 382

Query: 64  LKMVESGILHD---HNLKLD 81
            +MV+ G+  D   +N+ LD
Sbjct: 383 NRMVDCGVSPDIVTYNILLD 402

[Close]
BLAST of Bhi09G001345 vs. ExPASy Swiss-Prot
Match: Q9ZVX5 (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX=3702 GN=At2g16880 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.2e-13
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 0 

Query: 3   IDVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAEEF 62
           +D VTYNT+IS  CK +K + +YDLL+E+E + L PD FTYN  +  L   G++ E +E 
Sbjct: 623 VDTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDEL 682

Query: 63  LLKMVESGILHDHNLKLDKRQNVLTSEISE 93
           L K          +L+++  +N  TSE  E
Sbjct: 683 LKKFSGKFGSMKRDLQVETEKNPATSESKE 712

[Close]
BLAST of Bhi09G001345 vs. ExPASy Swiss-Prot
Match: Q9CAN6 (Pentatricopeptide repeat-containing protein At1g63070, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g63070 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-10
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 0 

Query: 4   DVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAEEFL 63
           DVV YNT+I GLCK +  ++++DL  ++E + + PD FTYN ++  L N GR  +A   L
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLL 308

Query: 64  LKMVESGILHD 75
             M+E  I  D
Sbjct: 309 SDMLEKNINPD 319

[Close]
BLAST of Bhi09G001345 vs. ExPASy Swiss-Prot
Match: Q9FMD3 (Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g16640 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-10
Identity = 28/70 (40.00%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 2   GIDVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAEE 61
           G DVVTYN+LISGLC + ++ ++  +++ +   ++ PD FT+N ++DA    GR+ EAEE
Sbjct: 218 GPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEE 277

Query: 62  FLLKMVESGI 72
           F  +M+   +
Sbjct: 278 FYEEMIRRSL 287

[Close]
BLAST of Bhi09G001345 vs. ExPASy Swiss-Prot
Match: Q8L6Y3 (Pentatricopeptide repeat-containing protein At5g24830 OS=Arabidopsis thaliana OX=3702 GN=At5g24830 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.5e-10
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 4   DVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAEEFL 63
           DV TYNTLIS LCK  KF+ + DL   ++   + PD  +Y VI+  L   G +  A EFL
Sbjct: 334 DVFTYNTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQGLCIHGDVNRANEFL 393

Query: 64  LKMVESGIL 73
           L M++S +L
Sbjct: 394 LSMLKSSLL 402

[Close]
BLAST of Bhi09G001345 vs. ExPASy Swiss-Prot
Match: Q0WKZ3 (Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana OX=3702 GN=At1g64580 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-09
Identity = 31/80 (38.75%), Postives = 49/80 (61.25%), Query Frame = 0 

Query: 4   DVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAEEFL 63
           DVVTYNTLI+G CK+++ E+   L  E+  + L  D FTYN ++     AG++  A++  
Sbjct: 323 DVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVF 382

Query: 64  LKMVESGILHD---HNLKLD 81
            +MV+ G+  D   +N+ LD
Sbjct: 383 NRMVDCGVSPDIVTYNILLD 402

[Close]
BLAST of Bhi09G001345 vs. ExPASy TrEMBL
Match: A0A6J1CB67 (pentatricopeptide repeat-containing protein At2g16880 OS=Momordica charantia OX=3673 GN=LOC111010061 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 75/96 (78.12%), Postives = 85/96 (88.54%), Query Frame = 0 

Query: 1   KGIDVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAE 60
           K IDVVTYNTLIS LCKA KF+N+Y+LLTE+E +KLGPD +TYN IL ALT+AGRIKEAE
Sbjct: 629 KDIDVVTYNTLISSLCKAGKFDNAYELLTEMEEKKLGPDQYTYNAILGALTDAGRIKEAE 688

Query: 61  EFLLKMVESGILHDHNLKLDKRQNVLTSEISEHNDS 97
           EF+LKMVESGILHD +LKLDK  NV TSEISEH+DS
Sbjct: 689 EFMLKMVESGILHDRSLKLDKGHNVPTSEISEHSDS 724

[Close]
BLAST of Bhi09G001345 vs. ExPASy TrEMBL
Match: A0A1S3BD66 (pentatricopeptide repeat-containing protein At2g16880 OS=Cucumis melo OX=3656 GN=LOC103488749 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.3e-33
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = 0 

Query: 1   KGIDVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAE 60
           KG+DVVTYNT+IS LCK  KFEN+YDLLTE+E +KLGPD +TY  I+ ALT+AGRI+EAE
Sbjct: 629 KGVDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKTIIAALTDAGRIEEAE 688

Query: 61  EFLLKMVESGILHDHNLKLDKRQNVLTSEISEHNDS 97
           EF+LKMVESGI+HD NLKL K QNVLTSE+SEH DS
Sbjct: 689 EFILKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDS 724

[Close]
BLAST of Bhi09G001345 vs. ExPASy TrEMBL
Match: A0A5A7SX61 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00370 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.3e-33
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = 0 

Query: 1   KGIDVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAE 60
           KG+DVVTYNT+IS LCK  KFEN+YDLLTE+E +KLGPD +TY  I+ ALT+AGRI+EAE
Sbjct: 571 KGVDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKTIIAALTDAGRIEEAE 630

Query: 61  EFLLKMVESGILHDHNLKLDKRQNVLTSEISEHNDS 97
           EF+LKMVESGI+HD NLKL K QNVLTSE+SEH DS
Sbjct: 631 EFILKMVESGIVHDQNLKLGKGQNVLTSEVSEHFDS 666

[Close]
BLAST of Bhi09G001345 vs. ExPASy TrEMBL
Match: A0A6J1FWH3 (pentatricopeptide repeat-containing protein At2g16880 OS=Cucurbita moschata OX=3662 GN=LOC111447545 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.9e-30
Identity = 69/96 (71.88%), Postives = 80/96 (83.33%), Query Frame = 0 

Query: 1   KGIDVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAE 60
           K IDVVTYNTLIS LCK  KFEN+YDLLT++E +KL PDN+TYN IL ALT+AGRI EAE
Sbjct: 622 KDIDVVTYNTLISSLCKEGKFENAYDLLTDMEEKKLEPDNYTYNAILGALTDAGRINEAE 681

Query: 61  EFLLKMVESGILHDHNLKLDKRQNVLTSEISEHNDS 97
           +F+LKMVESG LHD NLK DK ++V TSE+ EH DS
Sbjct: 682 KFMLKMVESGKLHDQNLKFDKGRSVATSELPEHIDS 717

[Close]
BLAST of Bhi09G001345 vs. ExPASy TrEMBL
Match: A0A6J1J3F6 (pentatricopeptide repeat-containing protein At2g16880 OS=Cucurbita maxima OX=3661 GN=LOC111482294 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.9e-29
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 0 

Query: 1   KGIDVVTYNTLISGLCKARKFENSYDLLTEIEGEKLGPDNFTYNVILDALTNAGRIKEAE 60
           K IDVVTYNTLIS LCK  KFEN+YDLLT++E +KL PD +TYN IL ALT+A RI EAE
Sbjct: 622 KDIDVVTYNTLISSLCKEGKFENAYDLLTDMEEKKLEPDKYTYNAILGALTDAARINEAE 681

Query: 61  EFLLKMVESGILHDHNLKLDKRQNVLTSEISEHNDS 97
           +F+LKMVESG LHD N KLDK Q+V TSEI EH DS
Sbjct: 682 KFMLKMVESGKLHDQNFKLDKGQSVATSEIPEHIDS 717

The following BLAST results are available for this feature:
BLAST of Bhi09G001345 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G16880.15.9e-1440.00Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G63070.11.6e-1142.25pentatricopeptide (PPR) repeat-containing protein [more]
AT5G16640.12.7e-1140.00Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G24830.14.6e-1144.93Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G64580.11.0e-1038.75Pentatricopeptide repeat (PPR) superfamily protein [more]
BLAST of Bhi09G001345 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZVX58.2e-1340.00Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana OX... [more]
Q9CAN62.2e-1042.25Pentatricopeptide repeat-containing protein At1g63070, mitochondrial OS=Arabidop... [more]
Q9FMD33.8e-1040.00Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidop... [more]
Q8L6Y36.5e-1044.93Pentatricopeptide repeat-containing protein At5g24830 OS=Arabidopsis thaliana OX... [more]
Q0WKZ31.5e-0938.75Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana OX... [more]
BLAST of Bhi09G001345 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CB671.5e-3378.13pentatricopeptide repeat-containing protein At2g16880 OS=Momordica charantia OX=... [more]
A0A1S3BD663.3e-3375.00pentatricopeptide repeat-containing protein At2g16880 OS=Cucumis melo OX=3656 GN... [more]
A0A5A7SX613.3e-3375.00Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1FWH35.9e-3071.88pentatricopeptide repeat-containing protein At2g16880 OS=Cucurbita moschata OX=3... [more]
A0A6J1J3F62.9e-2971.88pentatricopeptide repeat-containing protein At2g16880 OS=Cucurbita maxima OX=366... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 41..73
e-value: 6.7E-8
score: 30.2
coord: 6..39
e-value: 1.7E-7
score: 28.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 4..51
e-value: 1.0E-13
score: 51.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 4..38
score: 11.476539
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 39..73
score: 11.32308
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 2..89
e-value: 5.6E-19
score: 70.2
NoneNo IPR availablePANTHERPTHR46128MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1coord: 1..75
NoneNo IPR availablePANTHERPTHR46128:SF248BNAA07G03390D PROTEINcoord: 1..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M001345Bhi09M001345mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008378 galactosyltransferase activity
molecular_function GO:0003729 mRNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008194 UDP-glycosyltransferase activity