Bhi08G001738 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G001738
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Ribosome maturation factor rimM
Location	chr8: 61036956 .. 61038086 (+)
RNA-Seq Expression	Bhi08G001738
Synteny	Bhi08G001738

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAGAGAACTTCACCGCTATGTTCTTCTTCCTCTTTTTCTCATTCTTTTCCAAATATATCCATTCTTAATCGATACACTGAGCTTTTCCGAAAACGTCTCCCTCTTACTTGCAAGGGTTCGGCTTCCTCGATTCTTCAGGTGTCCTTGTACCATCTTCACACCTTCGTACTTTCGCAGCCTTCTCGCCGTAGAGTTGGTAAGTTCTTCCAGTTTGGTTATTCTAATTTATCTCGTTTAAGTTATGGCTGATGGAACGCCTCTGTTTTGGTGTTATATGTGGCCTTTTTTTGGAAACGCAATTTGAAATCAACTGGATTTTGTTGGTGTTTTTTAATGATTTGAAGGGAATGTGTCGTTCTTTTGAGTTGATGTGGGTAATTTAAATGTGAAATGATAATTTGTTTTGGCATTTCAGCTACTTCTGAGATTTTAGAATCTGTGGAAGCTCCGTTAGGATTTGTTGAAATTGGTTACATATCCAATGTTCATGGGACTGAAGGGGAAGTCCGAGTAAAACCTACTACTGATTTTCCTGAACTGCGATTCTCCACGGTAAACCAATGGCAATAATTCTCGAAAGAACCTGTGCATTTATACATCATTGTAGGAATGAGCTACTCCTTGCATATTGAAATGAAATTGAAACTCTTACAGTATATGCCTTGTGCCCCCAATTCTTTGCAGAAGAAGAAGATAAAAAAAGAAAACCCCTCCAATGCAGTGCTATAATTTTCACACACATATATATAGTGTGGGGGGAGGTGTTATTATTAAGGGAATTACATCCTATCAAGTCTTTATACGATACAAATACTCAAACCTTGAGTGTGTCTGTCATCCTAGCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTTTTCTTTTTTTCTCCCTCTTTTTCAAGAACATCCTAGTCCCTTTAAATCAATAGCGACTGCTACTTACCCCTTTTCTTTAGCCTGGCACAAGATGGTTGAAGCAGCAAGTTTCAGGTAGGGAAGAAATCCGAGAAGTTGACCTGGAAGATGGTAGGGAACACCCTGGTCGAAAGAGTTGGATATTGAAGTTTGTAGGAATTGATACTGCGGAACAGGTGACCTGTTTCCTTTTTGTGTATGACTAA

mRNA sequence

ATGATGCAGAGAACTTCACCGCTATGTTCTTCTTCCTCTTTTTCTCATTCTTTTCCAAATATATCCATTCTTAATCGATACACTGAGCTTTTCCGAAAACGTCTCCCTCTTACTTGCAAGGGTTCGGCTTCCTCGATTCTTCAGGTGTCCTTGTACCATCTTCACACCTTCGTACTTTCGCAGCCTTCTCGCCGTAGAGTTGCTACTTCTGAGATTTTAGAATCTGTGGAAGCTCCGTTAGGATTTGTTGAAATTGGTTACATATCCAATGTTCATGGGACTGAAGGGGAAGTCCGAGTAAAACCTACTACTGATTTTCCTGAACTGCGATTCTCCACGCCTGGCACAAGATGGTTGAAGCAGCAAGTTTCAGGTAGGGAAGAAATCCGAGAAGTTGACCTGGAAGATGGTAGGGAACACCCTGGTCGAAAGAGTTGGATATTGAAGTTTGTAGGAATTGATACTGCGGAACAGGTGACCTGTTTCCTTTTTGTGTATGACTAA

Coding sequence (CDS)

ATGATGCAGAGAACTTCACCGCTATGTTCTTCTTCCTCTTTTTCTCATTCTTTTCCAAATATATCCATTCTTAATCGATACACTGAGCTTTTCCGAAAACGTCTCCCTCTTACTTGCAAGGGTTCGGCTTCCTCGATTCTTCAGGTGTCCTTGTACCATCTTCACACCTTCGTACTTTCGCAGCCTTCTCGCCGTAGAGTTGCTACTTCTGAGATTTTAGAATCTGTGGAAGCTCCGTTAGGATTTGTTGAAATTGGTTACATATCCAATGTTCATGGGACTGAAGGGGAAGTCCGAGTAAAACCTACTACTGATTTTCCTGAACTGCGATTCTCCACGCCTGGCACAAGATGGTTGAAGCAGCAAGTTTCAGGTAGGGAAGAAATCCGAGAAGTTGACCTGGAAGATGGTAGGGAACACCCTGGTCGAAAGAGTTGGATATTGAAGTTTGTAGGAATTGATACTGCGGAACAGGTGACCTGTTTCCTTTTTGTGTATGACTAA

Protein sequence

MMQRTSPLCSSSSFSHSFPNISILNRYTELFRKRLPLTCKGSASSILQVSLYHLHTFVLSQPSRRRVATSEILESVEAPLGFVEIGYISNVHGTEGEVRVKPTTDFPELRFSTPGTRWLKQQVSGREEIREVDLEDGREHPGRKSWILKFVGIDTAEQVTCFLFVYD

Homology

[Close]

BLAST of Bhi08G001738 vs. TAIR 10
Match: AT5G46420.1 (16S rRNA processing protein RimM family )

HSP 1 Score: 127.9 bits (320), Expect = 7.8e-30
Identity = 73/159 (45.91%), Postives = 97/159 (61.01%), Query Frame = 0


Query: 2   MQRTSPLCSSSSFSHSFPNISILNRYTELFRKRLPLTCKGSASSILQVSLYHLHTFVLSQ 61
           M R S LCSS+S   +F  I + N  +     R  L+   SA S  +  L  L     S 
Sbjct: 1   MLRASLLCSSTSI--TFTPIQLFNPNSSHRFPRFELSRPVSALSRTKCHLSLLRARGKSS 60

Query: 62  PSRRRVATSEILE-SVEAPLGFVEIGYISNVHGTEGEVRVKPTTDFPELRFSTPGTRWLK 121
              R  AT E +E S  + L  VE+G++S VHG +GE+ +KP TDFP+LRFS PG RWLK
Sbjct: 61  FLTRSTATDEAVETSSNSGLDLVEVGFLSGVHGLQGEICIKPNTDFPDLRFSKPGRRWLK 120

Query: 122 QQVSGREEIREVDLEDGREHPGRKSWILKFVGIDTAEQV 160
           QQ+ G+++I EV+L +GR HP +KSWILKF G+D  +QV
Sbjct: 121 QQLLGQDKIDEVELVEGRPHPAQKSWILKFRGLDDVDQV 157

[Close]

BLAST of Bhi08G001738 vs. ExPASy Swiss-Prot
Match: Q7U9V4 (Ribosome maturation factor RimM OS=Synechococcus sp. (strain WH8102) OX=84588 GN=rimM PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 85  IGYISNVHGTEGEVRVKPTTDFPELRFSTPGTRWLKQQVSGREEIREVDLEDGREHPGRK 144
           +G +    G +GE+RV P +DFPE RF+TPG+RWL+ +  G  E +EV L+ GR+ PG+ 
Sbjct: 10  VGKLVGAQGLQGELRVNPASDFPE-RFTTPGSRWLRGRKGG--EPKEVQLKKGRQLPGKS 69

Query: 145 SWILKFVGIDTAE 158
            +IL+  GID+ +
Sbjct: 70  LFILRLEGIDSRD 79

[Close]

BLAST of Bhi08G001738 vs. ExPASy Swiss-Prot
Match: A5GI62 (Ribosome maturation factor RimM OS=Synechococcus sp. (strain WH7803) OX=32051 GN=rimM PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-10
Identity = 29/76 (38.16%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 82  FVEIGYISNVHGTEGEVRVKPTTDFPELRFSTPGTRWLKQQVSGREEIREVDLEDGREHP 141
           ++ +G +  V G +GE+RV P +DFPE RF+ PG+RWLK +    +  RE++L  GR+ P
Sbjct: 6   WLPVGKVVAVQGLKGELRVNPASDFPE-RFTEPGSRWLKAR---GQAPREIELTSGRQLP 65

Query: 142 GRKSWILKFVGIDTAE 158
           G+  ++++F G+++ +
Sbjct: 66  GKSVFVVRFAGVESRD 77

[Close]

BLAST of Bhi08G001738 vs. ExPASy Swiss-Prot
Match: Q7V4K0 (Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=rimM PE=3 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 8.7e-10
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 82  FVEIGYISNVHGTEGEVRVKPTTDFPELRFSTPGTRWLKQQVSGREEIREVDLEDGREHP 141
           ++ +G +    G +GE+R+ P++DFPE RF+ PG RWLK++     E R ++L  GR+ P
Sbjct: 7   WLTVGKVVAAQGMQGELRINPSSDFPE-RFTLPGQRWLKER---NGEPRPIELLTGRQLP 66

Query: 142 GRKSWILKFVGID 155
           GR  +++KF G++
Sbjct: 67  GRSLYVVKFAGVN 75

[Close]

BLAST of Bhi08G001738 vs. ExPASy Swiss-Prot
Match: A2CCX2 (Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain MIT 9303) OX=59922 GN=rimM PE=3 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = 0


Query: 82  FVEIGYISNVHGTEGEVRVKPTTDFPELRFSTPGTRWLKQQVSGREEIREVDLEDGREHP 141
           ++ +G +    G +GE+R+ P++DFPE RF+ PG RWLK++     E R ++L  GR+ P
Sbjct: 7   WLTVGKLVAAQGMQGELRINPSSDFPE-RFTLPGQRWLKER---NGEPRPIELLTGRQLP 66

Query: 142 GRKSWILKFVGID 155
           GR  +++KF G++
Sbjct: 67  GRSLYVVKFAGVN 75

[Close]

BLAST of Bhi08G001738 vs. ExPASy Swiss-Prot
Match: A9BD47 (Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain MIT 9211) OX=93059 GN=rimM PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-09
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 82  FVEIGYISNVHGTEGEVRVKPTTDFPELRFSTPGTRWLKQQVSGREEIREVDLEDGREHP 141
           ++ IG +    G  GEV+V P++DFPE RF  PG RWL++     EE   ++L+ GR+ P
Sbjct: 7   WLTIGKLVGAQGLRGEVKVNPSSDFPE-RFINPGERWLQKNT---EEPSRIELKSGRQLP 66

Query: 142 GRKSWILKFVGI 154
           G+  +I+ F+GI
Sbjct: 67  GKSIYIVSFIGI 74

[Close]

BLAST of Bhi08G001738 vs. ExPASy TrEMBL
Match: A0A0A0M055 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G461020 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.2e-73
Identity = 138/157 (87.90%), Postives = 148/157 (94.27%), Query Frame = 0


Query: 2   MQRTSPLCSSSSFSHSFPNISILNRYTELFRKRLPLTCKGSASSILQVSLYHLHTFVLSQ 61
           MQ TSPLCSS+SF HSFPNISILNR ++LFR+RLPLTCKGSAS ILQ+ LYHLH+F  SQ
Sbjct: 1   MQSTSPLCSSTSFFHSFPNISILNRCSQLFRRRLPLTCKGSASLILQLPLYHLHSFAHSQ 60

Query: 62  PSRRRVATSEILESVEAPLGFVEIGYISNVHGTEGEVRVKPTTDFPELRFSTPGTRWLKQ 121
           PSRRRVA+SEILE+VEAP GFVEIGYISNVHGTEGEVRVKP TDFPELRFSTPGTRWLKQ
Sbjct: 61  PSRRRVASSEILETVEAPSGFVEIGYISNVHGTEGEVRVKPITDFPELRFSTPGTRWLKQ 120

Query: 122 QVSGREEIREVDLEDGREHPGRKSWILKFVGIDTAEQ 159
           QVSGREEIREVDLEDGREHPGRKSWILKF+GIDTA+Q
Sbjct: 121 QVSGREEIREVDLEDGREHPGRKSWILKFIGIDTADQ 157

[Close]

BLAST of Bhi08G001738 vs. ExPASy TrEMBL
Match: A0A1S3BFX4 (LOW QUALITY PROTEIN: uncharacterized protein LOC103489403 OS=Cucumis melo OX=3656 GN=LOC103489403 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 135/157 (85.99%), Postives = 146/157 (92.99%), Query Frame = 0


Query: 2   MQRTSPLCSSSSFSHSFPNISILNRYTELFRKRLPLTCKGSASSILQVSLYHLHTFVLSQ 61
           M R SPLCSS+SFSH FPNISILNR T+LFR+RLPLTCKGSAS ILQ+ LYHLH F LS 
Sbjct: 1   MLRASPLCSSTSFSHYFPNISILNRCTQLFRRRLPLTCKGSASLILQLPLYHLHCFALSH 60

Query: 62  PSRRRVATSEILESVEAPLGFVEIGYISNVHGTEGEVRVKPTTDFPELRFSTPGTRWLKQ 121
           PSRRRVATSEI E+VEAP GFVEIGYISNVHGT+GEVRVKPTTDFPELRFSTPGTRWLKQ
Sbjct: 61  PSRRRVATSEIFETVEAPSGFVEIGYISNVHGTDGEVRVKPTTDFPELRFSTPGTRWLKQ 120

Query: 122 QVSGREEIREVDLEDGREHPGRKSWILKFVGIDTAEQ 159
           +VSGREEIREVDLE+GREHPGRKSWILKF+G+DTA+Q
Sbjct: 121 KVSGREEIREVDLENGREHPGRKSWILKFIGVDTADQ 157

[Close]

BLAST of Bhi08G001738 vs. ExPASy TrEMBL
Match: A0A5A7UUB3 (RimM domain-containing protein/PRC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00070 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 135/157 (85.99%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 2   MQRTSPLCSSSSFSHSFPNISILNRYTELFRKRLPLTCKGSASSILQVSLYHLHTFVLSQ 61
           M R SPLCSS+SFSH FPNISILNR T LFR+RLPLTCKGSAS ILQ+ LYHLH F LS 
Sbjct: 1   MLRASPLCSSTSFSHYFPNISILNRCTRLFRRRLPLTCKGSASLILQLPLYHLHCFALSH 60

Query: 62  PSRRRVATSEILESVEAPLGFVEIGYISNVHGTEGEVRVKPTTDFPELRFSTPGTRWLKQ 121
           PSRRRVATSEI E+VEAP GFVEIGYISNVHGT+GEVRVKPTTDFPELRFSTPGTRWLKQ
Sbjct: 61  PSRRRVATSEIFETVEAPSGFVEIGYISNVHGTDGEVRVKPTTDFPELRFSTPGTRWLKQ 120

Query: 122 QVSGREEIREVDLEDGREHPGRKSWILKFVGIDTAEQ 159
           +VSGREEIREVDLE+GREHPGRKSWILKF+G+DTA+Q
Sbjct: 121 KVSGREEIREVDLENGREHPGRKSWILKFIGVDTADQ 157

[Close]

BLAST of Bhi08G001738 vs. ExPASy TrEMBL
Match: A0A6J1EL23 (uncharacterized protein LOC111434278 OS=Cucurbita moschata OX=3662 GN=LOC111434278 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.4e-71
Identity = 139/159 (87.42%), Postives = 145/159 (91.19%), Query Frame = 0


Query: 1   MMQRTSPLCSSSSFSHSFPNISILNRYTELFRKRLPLTCKGSASSILQVSLY-HLHTFVL 60
           MMQRTSPLCSSSSFSHSFP IS+LNR TE FR+R+ LTCKGSA SILQ+ LY HLHT   
Sbjct: 1   MMQRTSPLCSSSSFSHSFPYISVLNRCTEPFRRRIALTCKGSAFSILQLPLYRHLHTLPR 60

Query: 61  SQPSRRRVATSEILESVEAPLGFVEIGYISNVHGTEGEVRVKPTTDFPELRFSTPGTRWL 120
            QPSRRRVATS+ILESVEAP GFVEIGYISNVHGTEGEVRVKP TDFPELRFSTPGTRWL
Sbjct: 61  LQPSRRRVATSQILESVEAPTGFVEIGYISNVHGTEGEVRVKPVTDFPELRFSTPGTRWL 120

Query: 121 KQQVSGREEIREVDLEDGREHPGRKSWILKFVGIDTAEQ 159
           KQQVSGREEIREVDLE+GREHPGRKSWILKF GIDTAEQ
Sbjct: 121 KQQVSGREEIREVDLEEGREHPGRKSWILKFKGIDTAEQ 159

[Close]

BLAST of Bhi08G001738 vs. ExPASy TrEMBL
Match: A0A6J1KQE9 (uncharacterized protein LOC111495546 OS=Cucurbita maxima OX=3661 GN=LOC111495546 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.9e-68
Identity = 136/159 (85.53%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MMQRTSPLCSSSSFSHSFPNISILNRYTELFRKRLPLTCKGSASSILQVSL-YHLHTFVL 60
           MMQRTSPLCSSSSFSHS P IS+LNR TE  R+R+ LTCKGSA SILQ+ L  HLHT  L
Sbjct: 1   MMQRTSPLCSSSSFSHSSPYISVLNRCTEPLRRRIALTCKGSAFSILQLPLNRHLHTLPL 60

Query: 61  SQPSRRRVATSEILESVEAPLGFVEIGYISNVHGTEGEVRVKPTTDFPELRFSTPGTRWL 120
            QPSRRRVATS+ILESVEAP GFVEIGYISNVHGTEGEVRVK  TDFPELRFSTPGTRWL
Sbjct: 61  LQPSRRRVATSQILESVEAPTGFVEIGYISNVHGTEGEVRVKSVTDFPELRFSTPGTRWL 120

Query: 121 KQQVSGREEIREVDLEDGREHPGRKSWILKFVGIDTAEQ 159
           KQQVSGREEIREVDLE+GREHPGRKSWILKF GIDTAEQ
Sbjct: 121 KQQVSGREEIREVDLEEGREHPGRKSWILKFKGIDTAEQ 159

The following BLAST results are available for this feature:

BLAST of Bhi08G001738 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46420.1	7.8e-30	45.91	16S rRNA processing protein RimM family	[more]

BLAST of Bhi08G001738 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7U9V4	1.6e-11	45.21	Ribosome maturation factor RimM OS=Synechococcus sp. (strain WH8102) OX=84588 GN...	[more]
A5GI62	2.3e-10	38.16	Ribosome maturation factor RimM OS=Synechococcus sp. (strain WH7803) OX=32051 GN...	[more]
Q7V4K0	8.7e-10	39.73	Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain MIT 9313) OX=...	[more]
A2CCX2	1.1e-09	39.73	Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain MIT 9303) OX=...	[more]
A9BD47	1.9e-09	41.67	Ribosome maturation factor RimM OS=Prochlorococcus marinus (strain MIT 9211) OX=...	[more]

BLAST of Bhi08G001738 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M055	1.2e-73	87.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G461020 PE=3 SV=1	[more]
A0A1S3BFX4	1.3e-72	85.99	LOW QUALITY PROTEIN: uncharacterized protein LOC103489403 OS=Cucumis melo OX=365...	[more]
A0A5A7UUB3	2.2e-72	85.99	RimM domain-containing protein/PRC domain-containing protein OS=Cucumis melo var...	[more]
A0A6J1EL23	2.4e-71	87.42	uncharacterized protein LOC111434278 OS=Cucurbita moschata OX=3662 GN=LOC1114342...	[more]
A0A6J1KQE9	1.9e-68	85.53	uncharacterized protein LOC111495546 OS=Cucurbita maxima OX=3661 GN=LOC111495546...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002676	RimM, N-terminal	PFAM	PF01782	RimM	coord: 84..160 e-value: 8.4E-18 score: 64.4
IPR036976	RimM, N-terminal domain superfamily	GENE3D	2.40.30.60	RimM	coord: 82..163 e-value: 6.9E-16 score: 60.1
IPR039741	UDP-sugar pyrophosphorylase	PANTHER	PTHR11952	UDP- GLUCOSE PYROPHOSPHORYLASE	coord: 26..159
None	No IPR available	PANTHER	PTHR11952:SF10	16S RRNA PROCESSING PROTEIN RIMM FAMILY	coord: 26..159
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 82..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M001738	Bhi08M001738	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006048	UDP-N-acetylglucosamine biosynthetic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003977	UDP-N-acetylglucosamine diphosphorylase activity